Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003290

Physical Location & Seq

Genomic Coordinates Forward (+)

17271143 .. 17274394

Gene Structure 3252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGGAGAGAGGGCGATCAGATGAAGAGGAAGCGAAGAGATCTAACGAACAAGACGAGAGGGCCCTGCAATTTCTGCGAATTCTCCAGCAGCAGATATGGATGCAGCTCTGAAGATAAGCTGCAGGAGCAAGACAATGAAGCAGTGCTGCGGAAAGAAGTCGAGAGATTACGGCTTTTGATCAAGAGAATGACTGGGAAGGAAGATATTGTCAGCTTCACCGAGCTGCTAGCTCTTCAAAGTCACCTTATGGATGTCCGATCCATTGTGCTGGAGCAAAAGAAGGAGGTAGAGCTGGAAGAAGCTGAAAGGCCGCACAAACAGAAGAAGGAAGCAGAGCATGATGCTGACGGTATGAGGAGAGGGGTTTTGGTTCCTTGCAAATTCTCTGCCAGCAGCTTGGGAGAAAGACAGGAAGATCCAAATGGTGAAGCACCACTGCTGCAAATGCAGAGGGAATTCGAGCAACGCAGCTCTGAATCCTTGCAGAGCGAGTTCGACAAATTATGGCTTTTTAACGAGAGAATGAATGGTAGAGAGCTCGAGGGTATGACTTCCTTCGACCTGTCCATACTTCACATTCAGATATTACGAGCTCTACGGGCTTTGATTGACCAAAAGTTGGGACCAAGACAAGAACATAGGGCATGGCAGCGCGGAGAGCTTGTTTGCCACACCGACAAGGAATCAGTCTCTGGGTTAGCTGAGCCCGGGAGATGTTCGTCGGATAATGACAAGGATGCTGACTCTTCCTTGCAATGTAGACTTCTTCTCGTTTCAAGAAAGCTCAGAAGATTCCATAATTCTTATCAGCGGAAGAGCATGCCGGAGACCAGGTCGGTCTGCCAGAGTCGAGTGACTTCCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

DUF563

Protein Analysis

289

Amino Acids

33.5

Weight (kDa)

7.6

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41440 AT2G41440 AT2G41440 AT2G41440 AT2G41445 AT2G41445 AT2G41445 AT2G41445 AT2G41470 AT2G41470 AT3G57230 AT3G57230 AT3G57230 AT3G57230 AT3G57230
fragaria_vesca	FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080
malus_domestica	MD08G1206400.v1.1 MD15G1389800.v1.1
prunus_persica	Prupe.1G538700_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1
rosa_laevigata	RLG00000001252
rosa_multiflora	Rmu_sc0000029.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227200
rosa_rugosa	Rorug07G0281200
rosa_samantha	Rh7AG437700 Rh7BG410400 Rh7CG457400
rosa_wichuraiana	Rw7G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	622
AccI	GTMKAC	1 cut(s)	763
AccII	CGCG	1 cut(s)	657
AciI	CCGC	4 cut(s)	151, 314, 657, 814
AclWI	GGATC	2 cut(s)	255, 413
AcsI	RAATTY	3 cut(s)	80, 383, 458
AcuI	CTGAAG	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	622
AgsI	TTSAA	2 cut(s)	239, 780
AjnI	CCWGG	1 cut(s)	833
Alw21I	GWGCWC	2 cut(s)	543, 598
Alw26I	GTCTC	2 cut(s)	697, 824
AlwI	GGATC	2 cut(s)	255, 413
AlwNI	CAGNNNCTG	1 cut(s)	695
Ama87I	CYCGRG	2 cut(s)	542, 710
AoxI	GGCC	2 cut(s)	62, 311
ApaI	GGGCCC	1 cut(s)	66
ApeKI	GCWGC	9 cut(s)	90, 105, 121, 148, 226, 396, 442, 471, 652
ApoI	RAATTY	3 cut(s)	80, 383, 458
AspLEI	GCGC	1 cut(s)	657
AspS9I	GGNCC	3 cut(s)	62, 63, 626
AsuC2I	CCSGG	2 cut(s)	711, 712
AsuHPI	GGTGA	3 cut(s)	211, 236, 440
AsuNHI	GCTAGC	1 cut(s)	229
AvaI	CYCGRG	2 cut(s)	542, 710
AvaII	GGWCC	1 cut(s)	626
BaeGI	GKGCMC	1 cut(s)	66
BanII	GRGCYC	4 cut(s)	66, 543, 598, 711
Bbv12I	GWGCWC	2 cut(s)	543, 598
BbvI	GCAGC	9 cut(s)	102, 108, 117, 135, 213, 408, 429, 483, 664
BceAI	ACGGC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	835
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	2 cut(s)	711, 712
BcoDI	GTCTC	2 cut(s)	697, 824
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	122
BglII	AGATCT	1 cut(s)	40
BlpI	GCTNAGC	1 cut(s)	705
Bme1390I	CCNGG	3 cut(s)	711, 712, 835
Bme18I	GGWCC	1 cut(s)	626
BmeT110I	CYCGRG	2 cut(s)	542, 710
BmgT120I	GGNCC	3 cut(s)	62, 63, 626
BmiI	GGNNCC	3 cut(s)	64, 375, 627
BmrFI	CCNGG	3 cut(s)	711, 712, 835
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	3 cut(s)	92, 334, 730
BmtI	GCTAGC	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	204
BpmI	CTGGAG	2 cut(s)	70, 293
Bpu1102I	GCTNAGC	1 cut(s)	705
BpuMI	CCSGG	2 cut(s)	711, 712
BsaI	GGTCTC	1 cut(s)	824
BsaJI	CCNNGG	1 cut(s)	710
BsaXI	ACNNNNNCTCC	4 cut(s)	651, 681, 821, 851
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	764
BseBI	CCWGG	1 cut(s)	835
BseDI	CCNNGG	1 cut(s)	710
BseGI	GGATG	3 cut(s)	107, 259, 745
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseMI	GCAATG	1 cut(s)	764
BseMII	CTCAG	2 cut(s)	696, 802
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	373
BseSI	GKGCMC	1 cut(s)	66
BseXI	GCAGC	9 cut(s)	102, 108, 117, 135, 213, 408, 429, 483, 664
Bsh1236I	CGCG	1 cut(s)	657
BshFI	GGCC	2 cut(s)	64, 313
BsiHKAI	GWGCWC	2 cut(s)	543, 598
BsiHKCI	CYCGRG	2 cut(s)	542, 710
BsiSI	CCGG	2 cut(s)	711, 827
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	1 cut(s)	622
BsmAI	GTCTC	2 cut(s)	697, 824
BsmFI	GGGAC	1 cut(s)	639
BsnI	GGCC	2 cut(s)	64, 313
Bso31I	GGTCTC	1 cut(s)	824
BsoBI	CYCGRG	2 cut(s)	542, 710
Bsp120I	GGGCCC	1 cut(s)	62
Bsp1286I	GDGCHC	4 cut(s)	66, 543, 598, 711
Bsp143I	GATC	5 cut(s)	16, 40, 180, 260, 418
Bsp1720I	GCTNAGC	1 cut(s)	705
BspACI	CCGC	4 cut(s)	151, 314, 657, 814
BspANI	GGCC	2 cut(s)	64, 313
BspCNI	CTCAG	2 cut(s)	697, 801
BspFNI	CGCG	1 cut(s)	657
BspLI	GGNNCC	3 cut(s)	64, 375, 627
BspMAI	CTGCAG	1 cut(s)	126
BspOI	GCTAGC	1 cut(s)	233
BspPI	GGATC	2 cut(s)	255, 413
BspQI	GCTCTTC	2 cut(s)	240, 812
BspTNI	GGTCTC	1 cut(s)	824
BsrDI	GCAATG	1 cut(s)	764
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	710
BssMI	GATC	5 cut(s)	16, 40, 180, 260, 418
Bst2UI	CCWGG	1 cut(s)	835
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	5 cut(s)	20, 31, 240, 754, 812
BstAPI	GCANNNNNTGC	1 cut(s)	75
BstC8I	GCNNGC	3 cut(s)	231, 394, 824
BstDEI	CTNAG	2 cut(s)	705, 788
BstF5I	GGATG	3 cut(s)	107, 259, 745
BstFNI	CGCG	1 cut(s)	657
BstHHI	GCGC	1 cut(s)	657
BstKTI	GATC	5 cut(s)	19, 43, 183, 263, 421
BstMAI	GTCTC	2 cut(s)	697, 824
BstMBI	GATC	5 cut(s)	16, 40, 180, 260, 418
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 127, 448, 602, 661
BstNI	CCWGG	1 cut(s)	835
BstNSI	RCATGY	1 cut(s)	826
BstSCI	CCNGG	3 cut(s)	709, 710, 833
BstSFI	CTRYAG	1 cut(s)	122
BstSLI	GKGCMC	1 cut(s)	66
BstUI	CGCG	1 cut(s)	657
BstV1I	GCAGC	9 cut(s)	102, 108, 117, 135, 213, 408, 429, 483, 664
BstX2I	RGATCY	2 cut(s)	40, 418
BstXI	CCANNNNNNTGG	2 cut(s)	271, 400
BstYI	RGATCY	2 cut(s)	40, 418
BsuRI	GGCC	2 cut(s)	64, 313
BtsCI	GGATG	3 cut(s)	107, 259, 745
BtsI	GCAGTG	2 cut(s)	150, 437
BtsIMutI	CAGTG	2 cut(s)	150, 437
Cac8I	GCNNGC	3 cut(s)	231, 394, 824
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	1 cut(s)	657
Cfr13I	GGNCC	3 cut(s)	62, 63, 626
Cfr9I	CCCGGG	1 cut(s)	710
CsiI	ACCWGGT	1 cut(s)	833
CviAII	CATG	3 cut(s)	341, 648, 823
DdeI	CTNAG	2 cut(s)	705, 788
DpnI	GATC	5 cut(s)	18, 42, 182, 262, 420
DpnII	GATC	5 cut(s)	16, 40, 180, 260, 418
Eam1104I	CTCTTC	5 cut(s)	20, 31, 240, 754, 812
EarI	CTCTTC	5 cut(s)	20, 31, 240, 754, 812
Ecl136II	GAGCTC	2 cut(s)	541, 596
Eco24I	GRGCYC	4 cut(s)	66, 543, 598, 711
Eco31I	GGTCTC	1 cut(s)	824
Eco47I	GGWCC	1 cut(s)	626
Eco53kI	GAGCTC	2 cut(s)	541, 596
Eco57I	CTGAAG	1 cut(s)	132
Eco88I	CYCGRG	2 cut(s)	542, 710
EcoICRI	GAGCTC	2 cut(s)	541, 596
EcoO109I	RGGNCCY	2 cut(s)	62, 63
EcoRI	GAATTC	2 cut(s)	80, 458
EcoRII	CCWGG	1 cut(s)	833
EcoT38I	GRGCYC	4 cut(s)	66, 543, 598, 711
FaeI	CATG	3 cut(s)	344, 651, 826
FaqI	GGGAC	1 cut(s)	639
FatI	CATG	3 cut(s)	340, 647, 822
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	763
FokI	GGATG	3 cut(s)	114, 266, 752
FriOI	GRGCYC	4 cut(s)	66, 543, 598, 711
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	1 cut(s)	656
GsuI	CTGGAG	2 cut(s)	70, 293
HaeIII	GGCC	2 cut(s)	64, 313
HapII	CCGG	2 cut(s)	711, 827
HhaI	GCGC	1 cut(s)	657
Hin1II	CATG	3 cut(s)	344, 651, 826
Hin6I	GCGC	1 cut(s)	655
HinP1I	GCGC	1 cut(s)	655
HinfI	GANTC	5 cut(s)	479, 686, 746, 795, 850
HpaII	CCGG	2 cut(s)	711, 827
HphI	GGTGA	3 cut(s)	211, 236, 440
Hpy166II	GTNNAC	1 cut(s)	764
Hpy188I	TCNGA	8 cut(s)	21, 112, 260, 478, 585, 727, 791, 865
Hpy188III	TCNNGA	3 cut(s)	163, 184, 780
Hpy8I	GTNNAC	1 cut(s)	764
Hpy99I	CGWCG	1 cut(s)	727
HpyAV	CCTTC	4 cut(s)	193, 277, 322, 568
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	8 cut(s)	69, 105, 124, 381, 445, 451, 487, 757
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 127, 448, 602, 661
HpyF3I	CTNAG	2 cut(s)	705, 788
Hsp92II	CATG	3 cut(s)	344, 651, 826
HspAI	GCGC	1 cut(s)	655
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	5 cut(s)	16, 40, 180, 260, 418
LguI	GCTCTTC	2 cut(s)	240, 812
LmnI	GCTCC	2 cut(s)	127, 274
Lsp1109I	GCAGC	9 cut(s)	102, 108, 117, 135, 213, 408, 429, 483, 664
LweI	GCATC	3 cut(s)	92, 334, 730
MabI	ACCWGGT	1 cut(s)	833
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	2 cut(s)	242, 856
MalI	GATC	5 cut(s)	18, 42, 182, 262, 420
MboI	GATC	5 cut(s)	16, 40, 180, 260, 418
MflI	RGATCY	2 cut(s)	40, 418
MhlI	GDGCHC	4 cut(s)	66, 543, 598, 711
MluCI	AATT	6 cut(s)	70, 80, 383, 458, 503, 802
MlyI	GAGTC	2 cut(s)	740, 859
MmeI	TCCRAC	1 cut(s)	705
MnlI	CCTC	8 cut(s)	4, 21, 53, 280, 351, 356, 447, 538
MseI	TTAA	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	814
MspI	CCGG	2 cut(s)	711, 827
MspR9I	CCNGG	3 cut(s)	711, 712, 835
MvaI	CCWGG	1 cut(s)	835
MvnI	CGCG	1 cut(s)	657
MwoI	GCNNNNNNNGC	5 cut(s)	75, 127, 448, 602, 661
NciI	CCSGG	2 cut(s)	711, 712
NdeII	GATC	5 cut(s)	16, 40, 180, 260, 418
NheI	GCTAGC	1 cut(s)	229
NlaIII	CATG	3 cut(s)	344, 651, 826
NlaIV	GGNNCC	3 cut(s)	64, 375, 627
NmuCI	GTSAC	2 cut(s)	242, 856
NspI	RCATGY	1 cut(s)	826
PaeI	GCATGC	1 cut(s)	826
PaeR7I	CTCGAG	1 cut(s)	542
PciSI	GCTCTTC	2 cut(s)	240, 812
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PfeI	GAWTC	3 cut(s)	479, 686, 795
PflFI	GACNNNGTC	1 cut(s)	835
PflMI	CCANNNNNTGG	1 cut(s)	622
PleI	GAGTC	2 cut(s)	740, 858
PpsI	GAGTC	2 cut(s)	740, 858
Psp124BI	GAGCTC	2 cut(s)	543, 598
Psp6I	CCWGG	1 cut(s)	833
PspGI	CCWGG	1 cut(s)	833
PspN4I	GGNNCC	3 cut(s)	64, 375, 627
PspOMI	GGGCCC	1 cut(s)	62
PspPI	GGNCC	3 cut(s)	62, 63, 626
PspXI	VCTCGAGB	1 cut(s)	542
PstI	CTGCAG	1 cut(s)	126
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	2 cut(s)	40, 418
PsyI	GACNNNGTC	1 cut(s)	835
SacI	GAGCTC	2 cut(s)	543, 598
SapI	GCTCTTC	2 cut(s)	240, 812
SaqAI	TTAA	1 cut(s)	516
Sau3AI	GATC	5 cut(s)	16, 40, 180, 260, 418
Sau96I	GGNCC	3 cut(s)	62, 63, 626
SchI	GAGTC	2 cut(s)	740, 859
ScrFI	CCNGG	3 cut(s)	711, 712, 835
SduI	GDGCHC	4 cut(s)	66, 543, 598, 711
SexAI	ACCWGGT	1 cut(s)	833
SfaNI	GCATC	3 cut(s)	92, 334, 730
SfcI	CTRYAG	1 cut(s)	122
Sfr274I	CTCGAG	1 cut(s)	542
SinI	GGWCC	1 cut(s)	626
SlaI	CTCGAG	1 cut(s)	542
SmaI	CCCGGG	1 cut(s)	712
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
SphI	GCATGC	1 cut(s)	826
Sse9I	AATT	6 cut(s)	70, 80, 383, 458, 503, 802
SsiI	CCGC	4 cut(s)	151, 314, 657, 814
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	2 cut(s)	543, 598
StyD4I	CCNGG	3 cut(s)	709, 710, 833
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	6 cut(s)	162, 462, 498, 543, 561, 853
TaqII	GACCGA	1 cut(s)	829
TasI	AATT	6 cut(s)	70, 80, 383, 458, 503, 802
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	3 cut(s)	479, 686, 795
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	2 cut(s)	150, 444
TseFI	GTSAC	2 cut(s)	242, 856
TseI	GCWGC	9 cut(s)	90, 105, 121, 148, 226, 396, 442, 471, 652
Tsp45I	GTSAC	2 cut(s)	242, 856
TspDTI	ATGAA	3 cut(s)	38, 153, 542
TspMI	CCCGGG	1 cut(s)	710
TspRI	CASTG	2 cut(s)	150, 444
Tth111I	GACNNNGTC	1 cut(s)	835
Van91I	CCANNNNNTGG	1 cut(s)	622
VpaK11BI	GGWCC	1 cut(s)	626
XapI	RAATTY	3 cut(s)	80, 383, 458
XceI	RCATGY	1 cut(s)	826
XhoI	CTCGAG	1 cut(s)	542
XmaI	CCCGGG	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	763
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.