Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000029.1

Orthogroup ID

OG0003290

Physical Location & Seq

Genomic Coordinates Forward (+)

57123 .. 60484

Gene Structure 3362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000029.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgatccagcacttgacaaaagcaagcaacactgccgattcacttgcgagatattttgaattgggctttctcccattgtcaaaaatccccactgctaccgccagtgggagtcagcaccatgtccagttatggcaaagggaagcagcaatgttaaggcaacaacttcaaaacttgcaagagagccataggcaaatgatgggtgaagagctttcaggcctgagtgtgaaagacttgcagaatctggagaaccaattggaaatcagtcttaggggtgtccgaatgaaaaaggatcaacttttaatggatgaaatacaagagctaaacagaaagggaaacctcattcaccaagaaaatgtcgagctgtataagaaggtaaacctaattcgtgaagaaaacatggaactatataagaaggtttatggaacaagggatgtaaatggagcaaatagaaatccctttctgacaaatggtctagacattggagaggacacacatgaaccagtcaatctccagcttagtcagccacagcagcaaaactatgaagaaccagcaagagctacaaagctggggtataatgcccttcctaaaactacagtgtctattatgattatcaacttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

206

Amino Acids

23.65

Weight (kDa)

6.32

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41440 AT2G41440 AT2G41440 AT2G41440 AT2G41445 AT2G41445 AT2G41445 AT2G41445 AT2G41470 AT2G41470 AT3G57230 AT3G57230 AT3G57230 AT3G57230 AT3G57230
fragaria_vesca	FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080
malus_domestica	MD08G1206400.v1.1 MD15G1389800.v1.1
prunus_persica	Prupe.1G538700_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1
rosa_laevigata	RLG00000001252
rosa_multiflora	Rmu_sc0000029.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227200
rosa_rugosa	Rorug07G0281200
rosa_samantha	Rh7AG437700 Rh7BG410400 Rh7CG457400
rosa_wichuraiana	Rw7G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	59, 167
AhdI	GACNNNNNGTC	1 cut(s)	468
AluBI	AGCT	6 cut(s)	208, 319, 361, 514, 557, 565
AluI	AGCT	6 cut(s)	208, 319, 361, 514, 557, 565
AlwI	GGATC	1 cut(s)	297
AlwNI	CAGNNNCTG	1 cut(s)	241
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	143, 529
AsuHPI	GGTGA	2 cut(s)	212, 335
BbvI	GCAGC	2 cut(s)	155, 541
BccI	CCATC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	1 cut(s)	591
BisI	GCNGC	2 cut(s)	144, 530
BlsI	GCNGC	2 cut(s)	145, 531
BmeRI	GACNNNNNGTC	1 cut(s)	468
BpmI	CTGGAG	2 cut(s)	263, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	3 cut(s)	102, 124, 500
Bse3DI	GCAATG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	310, 436
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	3 cut(s)	102, 124, 500
BseXI	GCAGC	2 cut(s)	155, 541
BseYI	CCCAGC	1 cut(s)	565
BshFI	GGCC	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	105
BsnI	GGCC	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	3, 289
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	210
BspPI	GGATC	1 cut(s)	297
BspQI	GCTCTTC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	3 cut(s)	102, 124, 500
BssMI	GATC	2 cut(s)	3, 289
Bst4CI	ACNGT	1 cut(s)	595
Bst6I	CTCTTC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	3 cut(s)	218, 266, 515
BstF5I	GGATG	2 cut(s)	310, 436
BstKTI	GATC	2 cut(s)	6, 292
BstMBI	GATC	2 cut(s)	3, 289
BstMWI	GCNNNNNNNGC	2 cut(s)	520, 529
BstSFI	CTRYAG	1 cut(s)	591
BstV1I	GCAGC	2 cut(s)	155, 541
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	310, 436
BtsI	GCAGTG	2 cut(s)	30, 90
BtsIMutI	CAGTG	4 cut(s)	30, 90, 109, 600
Cac8I	GCNNGC	1 cut(s)	25
CaiI	CAGNNNCTG	1 cut(s)	241
CviAII	CATG	3 cut(s)	119, 397, 494
DdeI	CTNAG	3 cut(s)	218, 266, 515
DpnI	GATC	2 cut(s)	5, 291
DpnII	GATC	2 cut(s)	3, 289
DriI	GACNNNNNGTC	1 cut(s)	468
Eam1104I	CTCTTC	1 cut(s)	198
Eam1105I	GACNNNNNGTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	198
Eco147I	AGGCCT	1 cut(s)	216
FaeI	CATG	3 cut(s)	122, 400, 497
FatI	CATG	3 cut(s)	118, 396, 493
Fnu4HI	GCNGC	2 cut(s)	144, 530
FokI	GGATG	2 cut(s)	317, 443
Fsp4HI	GCNGC	2 cut(s)	144, 530
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	2 cut(s)	144, 530
GsaI	CCCAGC	1 cut(s)	569
GsuI	CTGGAG	2 cut(s)	263, 494
HaeIII	GGCC	1 cut(s)	216
Hin1II	CATG	3 cut(s)	122, 400, 497
HinfI	GANTC	3 cut(s)	38, 109, 238
HphI	GGTGA	2 cut(s)	212, 335
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	2 cut(s)	278, 462
Hpy188III	TCNNGA	3 cut(s)	242, 386, 473
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	3 cut(s)	364, 406, 590
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4V	TGCA	2 cut(s)	175, 235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	520, 529
HpyF3I	CTNAG	3 cut(s)	218, 266, 515
Hsp92II	CATG	3 cut(s)	122, 400, 497
Kzo9I	GATC	2 cut(s)	3, 289
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	440
Lsp1109I	GCAGC	2 cut(s)	155, 541
MaeI	CTAG	1 cut(s)	473
MalI	GATC	2 cut(s)	5, 291
MboI	GATC	2 cut(s)	3, 289
MboII	GAAGA	3 cut(s)	215, 401, 554
MfeI	CAATTG	1 cut(s)	251
MluCI	AATT	3 cut(s)	59, 251, 381
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	2 cut(s)	347, 478
MseI	TTAA	3 cut(s)	152, 299, 619
MunI	CAATTG	1 cut(s)	251
MwoI	GCNNNNNNNGC	2 cut(s)	520, 529
NdeII	GATC	2 cut(s)	3, 289
NlaIII	CATG	3 cut(s)	122, 400, 497
PceI	AGGCCT	1 cut(s)	216
PciSI	GCTCTTC	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	38, 238
PkrI	GCNGC	2 cut(s)	145, 531
PleI	GAGTC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	117
PspFI	CCCAGC	1 cut(s)	565
PstNI	CAGNNNCTG	1 cut(s)	241
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	3 cut(s)	152, 299, 619
SatI	GCNGC	2 cut(s)	144, 530
Sau3AI	GATC	2 cut(s)	3, 289
SchI	GAGTC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	591
Sse9I	AATT	3 cut(s)	59, 251, 381
SseBI	AGGCCT	1 cut(s)	216
SsiI	CCGC	1 cut(s)	99
SspMI	CTAG	1 cut(s)	473
StuI	AGGCCT	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	595
TaqI	TCGA	1 cut(s)	357
TasI	AATT	3 cut(s)	59, 251, 381
TfiI	GAWTC	2 cut(s)	38, 238
Tru1I	TTAA	3 cut(s)	152, 299, 619
Tru9I	TTAA	3 cut(s)	152, 299, 619
TscAI	CASTG	4 cut(s)	37, 97, 109, 600
TseI	GCWGC	2 cut(s)	143, 529
TspDTI	ATGAA	4 cut(s)	296, 321, 510, 555
TspRI	CASTG	4 cut(s)	37, 97, 109, 600
XbaI	TCTAGA	1 cut(s)	472
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.