Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003290

Physical Location & Seq

Genomic Coordinates Forward (+)

17275470 .. 17277607

Gene Structure 2138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41445.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAAGTTGAAAGGGAGGCGAAGAGATTTGACGAAGAAGAAGGTGAGAGAGCTCTGCGATTATTGCGGATTCTCTAGCGGCATCATTAGGTATGATGAACAAAGGCCACACGAACGAGATCACGAAGCAGTGTCTATGGAGAATGAACTCAAGAGATTACGGCTTTTAACCAGGAGAATGACTTGTAAGGATCTCGATGGTCTGACTTTCCCCGAGCTGCTATCACTTAAAAGCCATCTACAGACTGCCTTGCTCATTGTGAAGGACCAAACGAAGAAGATAGAGCAGCTGCTTAAAGAAGATGATGGGTGGATGCTTATACGGAGGAAGGACGCAGAGGATGGTATGGGGAGAGAGGTTTCTGTTCCCTGCAAATTCTCTACCAGCAGCACGGGTGAGAGACAAGGTGATGAAGCACCAGCACCACCGCTGTCGCAACTGCAGCTACAATTCGAGAGACGAAATGCTGAACCCATGATGATCGAATACGGGAGATTATGGCTGTTGAAGGAGAGAATGAACGGTAGACAGCTCGACGGTATGAACAATGCCGAGCTGGCCTTACTTCAAGCTAAGATAGTACATGGATTGCAGGAGTTGCACGAGCATATGTATGCACCAACAATGGAAAAAATCGCTAAGAAGCGCAGATATCTGTTAAGAGAGGTTCCCGGCCGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

DUF563

Protein Analysis

227

Amino Acids

26.52

Weight (kDa)

9.33

Isoelectric Point (pI)

58.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41440 AT2G41440 AT2G41440 AT2G41440 AT2G41445 AT2G41445 AT2G41445 AT2G41445 AT2G41470 AT2G41470 AT3G57230 AT3G57230 AT3G57230 AT3G57230 AT3G57230
fragaria_vesca	FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080
malus_domestica	MD08G1206400.v1.1 MD15G1389800.v1.1
prunus_persica	Prupe.1G538700_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1
rosa_laevigata	RLG00000001252
rosa_multiflora	Rmu_sc0000029.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227200
rosa_rugosa	Rorug07G0281200
rosa_samantha	Rh7AG437700 Rh7BG410400 Rh7CG457400
rosa_wichuraiana	Rw7G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	526
AciI	CCGC	3 cut(s)	66, 78, 428
AclWI	GGATC	1 cut(s)	198
AcoI	YGGCCR	1 cut(s)	673
AcsI	RAATTY	1 cut(s)	374
AfaI	GTAC	1 cut(s)	582
AgsI	TTSAA	3 cut(s)	10, 508, 569
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	8 cut(s)	52, 217, 289, 445, 532, 556, 572, 681
AluI	AGCT	8 cut(s)	52, 217, 289, 445, 532, 556, 572, 681
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	2 cut(s)	394, 451
AlwI	GGATC	1 cut(s)	198
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	3 cut(s)	104, 558, 673
ApeKI	GCWGC	5 cut(s)	217, 286, 289, 387, 442
ApoI	RAATTY	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	648
AspS9I	GGNCC	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	672
AsuHPI	GGTGA	3 cut(s)	55, 407, 419
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	54
BauI	CACGAG	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	5 cut(s)	204, 276, 298, 399, 454
BccI	CCATC	4 cut(s)	191, 243, 299, 335
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	672
BcoDI	GTCTC	2 cut(s)	394, 451
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	2 cut(s)	239, 440
BglI	GCCNNNNNGGC	1 cut(s)	557
BisI	GCNGC	6 cut(s)	79, 218, 287, 290, 388, 443
BlsI	GCNGC	6 cut(s)	80, 219, 288, 291, 389, 444
Bme1390I	CCNGG	2 cut(s)	172, 672
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	669
BmrFI	CCNGG	2 cut(s)	172, 672
BmsI	GCATC	2 cut(s)	90, 303
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	672
BseBI	CCWGG	1 cut(s)	172
BseGI	GGATG	2 cut(s)	318, 346
BseX3I	CGGCCG	1 cut(s)	673
BseXI	GCAGC	5 cut(s)	204, 276, 298, 399, 454
Bsh1285I	CGRYCG	1 cut(s)	676
BshFI	GGCC	3 cut(s)	106, 560, 675
BsiEI	CGRYCG	1 cut(s)	676
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	672, 676
BsmAI	GTCTC	2 cut(s)	394, 451
BsmBI	CGTCTC	1 cut(s)	451
BsnI	GGCC	3 cut(s)	106, 560, 675
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	118, 190, 480
BspACI	CCGC	3 cut(s)	66, 78, 428
BspANI	GGCC	3 cut(s)	106, 560, 675
BspLI	GGNNCC	1 cut(s)	669
BspMAI	CTGCAG	1 cut(s)	444
BspPI	GGATC	1 cut(s)	198
BssMI	GATC	3 cut(s)	118, 190, 480
BssSI	CACGAG	1 cut(s)	602
Bst2BI	CACGAG	1 cut(s)	602
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	524, 539
Bst6I	CTCTTC	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	598
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	573, 639
BstF5I	GGATG	2 cut(s)	318, 346
BstHHI	GCGC	1 cut(s)	648
BstKTI	GATC	3 cut(s)	121, 193, 483
BstMAI	GTCTC	2 cut(s)	394, 451
BstMBI	GATC	3 cut(s)	118, 190, 480
BstMCI	CGRYCG	1 cut(s)	676
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 442, 557, 598
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	2 cut(s)	170, 670
BstSFI	CTRYAG	2 cut(s)	239, 440
BstV1I	GCAGC	5 cut(s)	204, 276, 298, 399, 454
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BstZI	CGGCCG	1 cut(s)	673
BsuRI	GGCC	3 cut(s)	106, 560, 675
BtsCI	GGATG	2 cut(s)	318, 346
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	558
CfoI	GCGC	1 cut(s)	648
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	581
CviAII	CATG	2 cut(s)	475, 584
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	2 cut(s)	573, 639
DpnI	GATC	3 cut(s)	120, 192, 482
DpnII	GATC	3 cut(s)	118, 190, 480
EaeI	YGGCCR	1 cut(s)	673
EagI	CGGCCG	1 cut(s)	673
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	52
EclXI	CGGCCG	1 cut(s)	673
Eco24I	GRGCYC	1 cut(s)	54
Eco32I	GATATC	1 cut(s)	653
Eco47I	GGWCC	1 cut(s)	265
Eco52I	CGGCCG	1 cut(s)	673
Eco53kI	GAGCTC	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	653
EcoT38I	GRGCYC	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	2 cut(s)	478, 587
FatI	CATG	2 cut(s)	474, 583
FauNDI	CATATG	1 cut(s)	609
FblI	GTMKAC	1 cut(s)	526
Fnu4HI	GCNGC	6 cut(s)	79, 218, 287, 290, 388, 443
FokI	GGATG	2 cut(s)	325, 353
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	6 cut(s)	79, 218, 287, 290, 388, 443
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	647
GluI	GCNGC	6 cut(s)	79, 218, 287, 290, 388, 443
HaeIII	GGCC	3 cut(s)	106, 560, 675
HapII	CCGG	2 cut(s)	672, 676
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	1 cut(s)	648
Hin1II	CATG	2 cut(s)	478, 587
Hin6I	GCGC	1 cut(s)	646
HinP1I	GCGC	1 cut(s)	646
HinfI	GANTC	1 cut(s)	69
HpaII	CCGG	2 cut(s)	672, 676
HphI	GGTGA	3 cut(s)	55, 407, 419
Hpy166II	GTNNAC	1 cut(s)	527
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	4 cut(s)	122, 151, 194, 454
Hpy8I	GTNNAC	1 cut(s)	527
Hpy99I	CGWCG	1 cut(s)	539
HpyAV	CCTTC	4 cut(s)	34, 256, 322, 502
HpyCH4III	ACNGT	2 cut(s)	524, 539
HpyCH4V	TGCA	5 cut(s)	372, 442, 592, 601, 617
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 442, 557, 598
HpyF3I	CTNAG	2 cut(s)	573, 639
Hsp92II	CATG	2 cut(s)	478, 587
HspAI	GCGC	1 cut(s)	646
Kzo9I	GATC	3 cut(s)	118, 190, 480
LmnI	GCTCC	1 cut(s)	678
LpnPI	CCDG	7 cut(s)	157, 184, 382, 397, 432, 542, 578
Lsp1109I	GCAGC	5 cut(s)	204, 276, 298, 399, 454
LweI	GCATC	2 cut(s)	90, 303
MaeI	CTAG	1 cut(s)	75
MalI	GATC	3 cut(s)	120, 192, 482
MboI	GATC	3 cut(s)	118, 190, 480
MboII	GAAGA	6 cut(s)	33, 46, 49, 286, 289, 311
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	2 cut(s)	374, 449
MnlI	CCTC	5 cut(s)	9, 318, 331, 349, 658
MseI	TTAA	4 cut(s)	167, 228, 294, 659
MslI	CAYNNNNRTG	1 cut(s)	612
MspA1I	CMGCKG	2 cut(s)	289, 430
MspI	CCGG	2 cut(s)	672, 676
MspR9I	CCNGG	2 cut(s)	172, 672
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	4 cut(s)	63, 442, 557, 598
NciI	CCSGG	1 cut(s)	672
NdeI	CATATG	1 cut(s)	609
NdeII	GATC	3 cut(s)	118, 190, 480
NlaIII	CATG	2 cut(s)	478, 587
NlaIV	GGNNCC	1 cut(s)	669
NmeAIII	GCCGAG	1 cut(s)	577
PfeI	GAWTC	1 cut(s)	69
PkrI	GCNGC	6 cut(s)	80, 219, 288, 291, 389, 444
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	669
PspPI	GGNCC	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	444
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
RseI	CAYNNNNRTG	1 cut(s)	612
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	4 cut(s)	167, 228, 294, 659
SatI	GCNGC	6 cut(s)	79, 218, 287, 290, 388, 443
Sau3AI	GATC	3 cut(s)	118, 190, 480
Sau96I	GGNCC	1 cut(s)	265
ScrFI	CCNGG	2 cut(s)	172, 672
SduI	GDGCHC	1 cut(s)	54
SfaNI	GCATC	2 cut(s)	90, 303
SfcI	CTRYAG	2 cut(s)	239, 440
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	374, 449
SsiI	CCGC	3 cut(s)	66, 78, 428
SspMI	CTAG	1 cut(s)	75
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	2 cut(s)	170, 670
TaaI	ACNGT	2 cut(s)	524, 539
TaqI	TCGA	4 cut(s)	195, 453, 483, 534
TasI	AATT	2 cut(s)	374, 449
TatI	WGTACW	1 cut(s)	580
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	69
Tru1I	TTAA	4 cut(s)	167, 228, 294, 659
Tru9I	TTAA	4 cut(s)	167, 228, 294, 659
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	5 cut(s)	217, 286, 289, 387, 442
TspDTI	ATGAA	6 cut(s)	17, 111, 159, 426, 533, 557
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	526
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.