Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003290

Physical Location & Seq

Genomic Coordinates Forward (+)

21177282 .. 21181026

Gene Structure 3745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57230.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGAAGGGGCAAGATCGCGATTAAGAGGATCAATAACTCTACGAGCCGTCAGGTTACGTTCTCGAAGCGAAGGAATGGATTGTTGAAGAAAGCTAAGGAGCTTGCGATTCTCTGCGATGCTGAGGTTGGTGTCATCATCTTCTCCAGCACCGGTAGGCTCTACGATTTCTCCAGCTCCAGCATGAAATCGGTCATAGAGAGATACAGCGATGCCAAAGGAGAAACCAGTTCAGAAAATGATCCCGCTTCAGAAATTCAGTTCTGGCAAAAGGAGGCTGCGATTCTAAAGCGTCAGCTACATAACTTGCAAGAAAACCACCGGCAAATGATGGGGGAGGAGCTCTCTGGACTAAGTGTAGAAGCTTTACAGAATTTGGAAAATCAGCTTGAATTGAGCCTTCGTGGCGTTCGAATGAAAAAGGATCAAATGTTAATCGAAGAAATACAAGTACTTAACCGAGAGGGGAATCTCGTTCACCAAGAGAATTTAGACCTCCACAAGAAAGTAAACCTAATGCACCAACAGAACATGGAACTACATGAAAAGGTTTCAGAGGTCGAGGGTGTGAAAATCGCAAACAAGAATTCTCTTCTCACAAATGGTCTAGACATGAGAGATACCTCGAACGAACATGTCCATCTTCAGCTCAGCCAACCGCAGCATGATCATGAGACGCATTCAAAAGCTATCCAACTCAACTATTTTTCCTTCATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

240

Amino Acids

27.43

Weight (kDa)

6.84

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	48 - 136	1.1e-25	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41440 AT2G41440 AT2G41440 AT2G41440 AT2G41445 AT2G41445 AT2G41445 AT2G41445 AT2G41470 AT2G41470 AT3G57230 AT3G57230 AT3G57230 AT3G57230 AT3G57230
fragaria_vesca	FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080
malus_domestica	MD08G1206400.v1.1 MD15G1389800.v1.1
prunus_persica	Prupe.1G538700_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1
rosa_laevigata	RLG00000001252
rosa_multiflora	Rmu_sc0000029.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227200
rosa_rugosa	Rorug07G0281200
rosa_samantha	Rh7AG437700 Rh7BG410400 Rh7CG457400
rosa_wichuraiana	Rw7G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	20
AciI	CCGC	2 cut(s)	246, 659
AclWI	GGATC	3 cut(s)	38, 236, 432
AcsI	RAATTY	4 cut(s)	255, 373, 487, 586
AcuI	CTGAAG	2 cut(s)	234, 629
AfaI	GTAC	1 cut(s)	453
AflIII	ACRYGT	1 cut(s)	634
AgeI	ACCGGT	1 cut(s)	152
AgsI	TTSAA	3 cut(s)	88, 392, 684
AluBI	AGCT	9 cut(s)	95, 103, 177, 298, 343, 365, 388, 649, 689
AluI	AGCT	9 cut(s)	95, 103, 177, 298, 343, 365, 388, 649, 689
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	668
AlwI	GGATC	3 cut(s)	38, 236, 432
ApeKI	GCWGC	2 cut(s)	278, 661
ApoI	RAATTY	4 cut(s)	255, 373, 487, 586
AsiGI	ACCGGT	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	470
AsuII	TTCGAA	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	265, 673
BccI	CCATC	2 cut(s)	325, 648
BceAI	ACGGC	1 cut(s)	33
BclI	TGATCA	1 cut(s)	667
BcoDI	GTCTC	1 cut(s)	668
BfaI	CTAG	1 cut(s)	608
BglI	GCCNNNNNGGC	1 cut(s)	405
BisI	GCNGC	2 cut(s)	279, 662
BlpI	GCTNAGC	1 cut(s)	650
BlsI	GCNGC	2 cut(s)	280, 663
BmcAI	AGTACT	1 cut(s)	453
BmsI	GCATC	2 cut(s)	109, 202
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
BpmI	CTGGAG	3 cut(s)	130, 157, 163
Bpu10I	CCTNAGC	2 cut(s)	96, 123
Bpu1102I	GCTNAGC	1 cut(s)	650
Bpu14I	TTCGAA	1 cut(s)	412
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bse118I	RCCGGY	2 cut(s)	152, 321
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	714
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	2 cut(s)	114, 664
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	265, 673
Bsh1236I	CGCG	1 cut(s)	20
BshTI	ACCGGT	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	2 cut(s)	153, 322
BsmAI	GTCTC	1 cut(s)	668
BsmBI	CGTCTC	1 cut(s)	668
BsmI	GAATGC	1 cut(s)	679
Bsp119I	TTCGAA	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	5 cut(s)	15, 30, 241, 424, 667
Bsp1720I	GCTNAGC	1 cut(s)	650
Bsp68I	TCGCGA	1 cut(s)	20
BspACI	CCGC	2 cut(s)	246, 659
BspCNI	CTCAG	2 cut(s)	115, 663
BspFNI	CGCG	1 cut(s)	20
BspHI	TCATGA	1 cut(s)	670
BspPI	GGATC	3 cut(s)	38, 236, 432
BspT104I	TTCGAA	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	714
BsrFI	RCCGGY	2 cut(s)	152, 321
BsrI	ACTGG	1 cut(s)	228
BssAI	RCCGGY	2 cut(s)	152, 321
BssMI	GATC	5 cut(s)	15, 30, 241, 424, 667
Bst6I	CTCTTC	1 cut(s)	597
BstBI	TTCGAA	1 cut(s)	412
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	4 cut(s)	96, 123, 353, 650
BstFNI	CGCG	1 cut(s)	20
BstKTI	GATC	5 cut(s)	18, 33, 244, 427, 670
BstMAI	GTCTC	1 cut(s)	668
BstMBI	GATC	5 cut(s)	15, 30, 241, 424, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	638
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	265, 673
BtgZI	GCGATG	2 cut(s)	132, 225
BtuMI	TCGCGA	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	105
CciI	TCATGA	1 cut(s)	670
Cfr10I	RCCGGY	2 cut(s)	152, 321
CseI	GACGC	2 cut(s)	281, 685
Csp6I	GTAC	1 cut(s)	452
CspAI	ACCGGT	1 cut(s)	152
CviAII	CATG	7 cut(s)	184, 532, 542, 613, 635, 665, 671
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	4 cut(s)	96, 123, 353, 650
DpnI	GATC	5 cut(s)	17, 32, 243, 426, 669
DpnII	GATC	5 cut(s)	15, 30, 241, 424, 667
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Ecl136II	GAGCTC	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	345
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	234, 629
EcoICRI	GAGCTC	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	668
FaeI	CATG	7 cut(s)	187, 535, 545, 616, 638, 668, 674
FatI	CATG	7 cut(s)	183, 531, 541, 612, 634, 664, 670
FauI	CCCGC	1 cut(s)	253
FbaI	TGATCA	1 cut(s)	667
Fnu4HI	GCNGC	2 cut(s)	279, 662
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	279, 662
FspBI	CTAG	1 cut(s)	608
GluI	GCNGC	2 cut(s)	279, 662
GsuI	CTGGAG	3 cut(s)	130, 157, 163
HapII	CCGG	2 cut(s)	153, 322
HgaI	GACGC	2 cut(s)	281, 685
Hin1II	CATG	7 cut(s)	187, 535, 545, 616, 638, 668, 674
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	3 cut(s)	109, 283, 469
HpaII	CCGG	2 cut(s)	153, 322
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	2 cut(s)	478, 511
Hpy188I	TCNGA	3 cut(s)	235, 253, 556
Hpy188III	TCNNGA	5 cut(s)	19, 64, 348, 608, 671
Hpy8I	GTNNAC	2 cut(s)	478, 511
HpyAV	CCTTC	3 cut(s)	66, 410, 721
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	310, 520, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	405
HpyF3I	CTNAG	4 cut(s)	96, 123, 353, 650
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	7 cut(s)	187, 535, 545, 616, 638, 668, 674
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	5 cut(s)	15, 30, 241, 424, 667
LmnI	GCTCC	3 cut(s)	100, 182, 340
LpnPI	CCDG	9 cut(s)	38, 160, 166, 187, 193, 241, 250, 333, 335
Lsp1109I	GCAGC	2 cut(s)	265, 673
LweI	GCATC	2 cut(s)	109, 202
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	5 cut(s)	17, 32, 243, 426, 669
MboI	GATC	5 cut(s)	15, 30, 241, 424, 667
MboII	GAAGA	5 cut(s)	100, 133, 452, 584, 635
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	5 cut(s)	255, 373, 392, 487, 586
MmeI	TCCRAC	1 cut(s)	718
MnlI	CCTC	9 cut(s)	21, 118, 268, 331, 457, 506, 550, 556, 634
MseI	TTAA	3 cut(s)	24, 434, 456
MslI	CAYNNNNRTG	1 cut(s)	669
MspI	CCGG	2 cut(s)	153, 322
Mva1269I	GAATGC	1 cut(s)	679
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	405
NdeII	GATC	5 cut(s)	15, 30, 241, 424, 667
NlaIII	CATG	7 cut(s)	187, 535, 545, 616, 638, 668, 674
NruI	TCGCGA	1 cut(s)	20
NspI	RCATGY	1 cut(s)	638
NspV	TTCGAA	1 cut(s)	412
PagI	TCATGA	1 cut(s)	670
PciI	ACATGT	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	1 cut(s)	409
PctI	GAATGC	1 cut(s)	679
PfeI	GAWTC	3 cut(s)	109, 283, 469
PinAI	ACCGGT	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	280, 663
PscI	ACATGT	1 cut(s)	634
Psp124BI	GAGCTC	1 cut(s)	345
RruI	TCGCGA	1 cut(s)	20
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
RseI	CAYNNNNRTG	1 cut(s)	669
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	3 cut(s)	24, 434, 456
SatI	GCNGC	2 cut(s)	279, 662
Sau3AI	GATC	5 cut(s)	15, 30, 241, 424, 667
ScaI	AGTACT	1 cut(s)	453
SduI	GDGCHC	1 cut(s)	345
SfaNI	GCATC	2 cut(s)	109, 202
SfuI	TTCGAA	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	669
Sse9I	AATT	5 cut(s)	255, 373, 392, 487, 586
SsiI	CCGC	2 cut(s)	246, 659
SspMI	CTAG	1 cut(s)	608
SstI	GAGCTC	1 cut(s)	345
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	5 cut(s)	65, 412, 438, 561, 626
TaqII	GACCGA	1 cut(s)	181
TasI	AATT	5 cut(s)	255, 373, 392, 487, 586
TatI	WGTACW	1 cut(s)	451
TfiI	GAWTC	3 cut(s)	109, 283, 469
Tru1I	TTAA	3 cut(s)	24, 434, 456
Tru9I	TTAA	3 cut(s)	24, 434, 456
TseI	GCWGC	2 cut(s)	278, 661
TspDTI	ATGAA	4 cut(s)	200, 431, 558, 703
XapI	RAATTY	4 cut(s)	255, 373, 487, 586
XbaI	TCTAGA	1 cut(s)	607
XceI	RCATGY	1 cut(s)	638
XspI	CTAG	1 cut(s)	608
ZrmI	AGTACT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.