Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003290

Physical Location & Seq

Genomic Coordinates Forward (+)

44040611 .. 44050971

Gene Structure 10361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G538800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGACTGAAACTAGCTACATAAAATCAGTAATTGAACGATACAACAAAGCGAAAGAGGAGCACCATCAATTTGGAAATCCAACTTCTGAGATTAAGTTATGGCAAAGGGAGGCAGCAATGTTGAGGCAACAACTTCAAAACTTGCAGGAAAACCATAGGCAAATGATGGGCGAAGAGCTTTCTGGCCTCAGTGTTAAAGATTTACAGAATCTGGAGAACCAATTGGAAATGAGTATTCGGGGTGTCCGAATGAAAAAGGATCAACTTTTAATGGACGAAATACAAGAACTAAACAGAAAGGGGAACCTCATTCACCAAGAAAATGTCGAGCTGTATAAGAAGGTAAACCTAACTCGTCAACAAAACATGGAATTATATAAGAAGGTTTATGGAACAAGGGATGTAAATGGAGCAAATAGAAATCCCCTTCTGACAAATGGTCTAGGTATTGGAGAGGACTCACATGGACCTGTCCAACTCCAGCTTAGCCAGCCACAGCAGCAAAACTGCGAGACAACAGCAAGAGCTACAAAGCTGGGACTACAACTACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

185

Amino Acids

21.35

Weight (kDa)

7.87

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41440 AT2G41440 AT2G41440 AT2G41440 AT2G41445 AT2G41445 AT2G41445 AT2G41445 AT2G41470 AT2G41470 AT3G57230 AT3G57230 AT3G57230 AT3G57230 AT3G57230
fragaria_vesca	FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080
malus_domestica	MD08G1206400.v1.1 MD15G1389800.v1.1
prunus_persica	Prupe.1G538700_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1
rosa_laevigata	RLG00000001252
rosa_multiflora	Rmu_sc0000029.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227200
rosa_rugosa	Rorug07G0281200
rosa_samantha	Rh7AG437700 Rh7BG410400 Rh7CG457400
rosa_wichuraiana	Rw7G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	267
AgsI	TTSAA	2 cut(s)	35, 137
AhdI	GACNNNNNGTC	1 cut(s)	438
AluBI	AGCT	6 cut(s)	15, 178, 331, 484, 527, 535
AluI	AGCT	6 cut(s)	15, 178, 331, 484, 527, 535
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	1 cut(s)	267
AlwNI	CAGNNNCTG	1 cut(s)	211
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	113, 499
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	467
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	125, 511
BccI	CCATC	2 cut(s)	72, 160
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	2 cut(s)	12, 443
BisI	GCNGC	2 cut(s)	114, 500
BlpI	GCTNAGC	1 cut(s)	485
BlsI	GCNGC	2 cut(s)	115, 501
Bme18I	GGWCC	1 cut(s)	467
BmeRI	GACNNNNNGTC	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	1 cut(s)	305
BpmI	CTGGAG	2 cut(s)	233, 464
Bpu1102I	GCTNAGC	1 cut(s)	485
Bse3DI	GCAATG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	406
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	78, 202
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	125, 511
BseYI	CCCAGC	1 cut(s)	535
BshFI	GGCC	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	506
BsnI	GGCC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	259
Bsp1720I	GCTNAGC	1 cut(s)	485
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	2 cut(s)	79, 201
BspLI	GGNNCC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	267
BspQI	GCTCTTC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	123
BssMI	GATC	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	491
BstDEI	CTNAG	3 cut(s)	87, 188, 485
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	2 cut(s)	490, 499
BstV1I	GCAGC	2 cut(s)	125, 511
BstXI	CCANNNNNNTGG	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	491
CaiI	CAGNNNCTG	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	467
CviAII	CATG	2 cut(s)	367, 464
CviJI	RGCY	9 cut(s)	15, 178, 186, 331, 484, 489, 493, 527, 535
CviKI_1	RGCY	9 cut(s)	15, 178, 186, 331, 484, 489, 493, 527, 535
DdeI	CTNAG	3 cut(s)	87, 188, 485
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
DriI	GACNNNNNGTC	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	168
Eam1105I	GACNNNNNGTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	467
FaeI	CATG	2 cut(s)	370, 467
FaiI	YATR	9 cut(s)	20, 100, 156, 336, 368, 376, 378, 390, 465
FatI	CATG	2 cut(s)	366, 463
Fnu4HI	GCNGC	2 cut(s)	114, 500
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	2 cut(s)	114, 500
FspBI	CTAG	2 cut(s)	12, 443
GluI	GCNGC	2 cut(s)	114, 500
GsaI	CCCAGC	1 cut(s)	539
GsuI	CTGGAG	2 cut(s)	233, 464
HaeIII	GGCC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	370, 467
HincII	GTYRAC	1 cut(s)	359
HindII	GTYRAC	1 cut(s)	359
HinfI	GANTC	2 cut(s)	208, 458
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	2 cut(s)	346, 359
Hpy188I	TCNGA	3 cut(s)	88, 248, 432
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	2 cut(s)	346, 359
HpyAV	CCTTC	3 cut(s)	334, 376, 437
HpyCH4V	TGCA	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	2 cut(s)	490, 499
HpyF3I	CTNAG	3 cut(s)	87, 188, 485
Hsp92II	CATG	2 cut(s)	370, 467
Kzo9I	GATC	1 cut(s)	259
LguI	GCTCTTC	1 cut(s)	168
LmnI	GCTCC	2 cut(s)	58, 410
LpnPI	CCDG	7 cut(s)	131, 168, 197, 483, 494, 503, 521
Lsp1109I	GCAGC	2 cut(s)	125, 511
MaeI	CTAG	2 cut(s)	12, 443
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	185
MfeI	CAATTG	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	4 cut(s)	30, 68, 221, 371
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	2 cut(s)	104, 499
MnlI	CCTC	6 cut(s)	49, 103, 117, 197, 317, 448
MseI	TTAA	3 cut(s)	93, 195, 269
MunI	CAATTG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	490, 499
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	2 cut(s)	370, 467
NlaIV	GGNNCC	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	115, 501
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
PspFI	CCCAGC	1 cut(s)	535
PspN4I	GGNNCC	1 cut(s)	305
PspPI	GGNCC	1 cut(s)	467
PstNI	CAGNNNCTG	1 cut(s)	211
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	93, 195, 269
SatI	GCNGC	2 cut(s)	114, 500
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	467
SchI	GAGTC	1 cut(s)	452
SduI	GDGCHC	1 cut(s)	63
SinI	GGWCC	1 cut(s)	467
Sse9I	AATT	4 cut(s)	30, 68, 221, 371
SspMI	CTAG	2 cut(s)	12, 443
TaqI	TCGA	1 cut(s)	327
TasI	AATT	4 cut(s)	30, 68, 221, 371
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	3 cut(s)	93, 195, 269
Tru9I	TTAA	3 cut(s)	93, 195, 269
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	2 cut(s)	113, 499
TspDTI	ATGAA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	467
XspI	CTAG	2 cut(s)	12, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.