Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003290

Physical Location & Seq

Genomic Coordinates Reverse (-)

46063286 .. 46063679

Gene Structure 394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG410400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGGTGAAGAGCTTTCAGGCCTGAGTGTGAAAGACTTGCAGAATCTGGAGAACCAATTGGAAATGAGTCTTAGGGGTGTCCGAATGAAAAAGGATCAACTTTTAATGGATGAAATACAAGACCTAAACAGAAAGGGAAACCTCATTCACCAAGAAAATGTCGAGCTGTATAAGAAGGTAAACCTAATTCGTCAAGAAAACATGGAACTATATAAGAAGGTACTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

76

Amino Acids

8.99

Weight (kDa)

5.8

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	1 - 60	3.4e-20	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41440 AT2G41440 AT2G41440 AT2G41440 AT2G41445 AT2G41445 AT2G41445 AT2G41445 AT2G41470 AT2G41470 AT3G57230 AT3G57230 AT3G57230 AT3G57230 AT3G57230
fragaria_vesca	FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080
malus_domestica	MD08G1206400.v1.1 MD15G1389800.v1.1
prunus_persica	Prupe.1G538700_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1
rosa_laevigata	RLG00000001252
rosa_multiflora	Rmu_sc0000029.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227200
rosa_rugosa	Rorug07G0281200
rosa_samantha	Rh7AG437700 Rh7BG410400 Rh7CG457400
rosa_wichuraiana	Rw7G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	222
AluBI	AGCT	2 cut(s)	13, 166
AluI	AGCT	2 cut(s)	13, 166
AlwI	GGATC	1 cut(s)	102
AlwNI	CAGNNNCTG	1 cut(s)	46
AoxI	GGCC	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	17, 140
BpmI	CTGGAG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	15
BspPI	GGATC	1 cut(s)	102
BspQI	GCTCTTC	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	3
BstDEI	CTNAG	2 cut(s)	23, 71
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	115
CaiI	CAGNNNCTG	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	3 cut(s)	13, 21, 166
CviKI_1	RGCY	3 cut(s)	13, 21, 166
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	23, 71
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco147I	AGGCCT	1 cut(s)	21
FaeI	CATG	1 cut(s)	205
FaiI	YATR	4 cut(s)	171, 203, 211, 213
FatI	CATG	1 cut(s)	201
FokI	GGATG	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	205
HinfI	GANTC	2 cut(s)	43, 67
HphI	GGTGA	2 cut(s)	17, 140
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	2 cut(s)	47, 194
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	2 cut(s)	169, 211
HpyCH4V	TGCA	1 cut(s)	40
HpyF3I	CTNAG	2 cut(s)	23, 71
Hsp92II	CATG	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	94
LguI	GCTCTTC	1 cut(s)	3
LpnPI	CCDG	4 cut(s)	3, 32, 35, 209
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	1 cut(s)	20
MfeI	CAATTG	1 cut(s)	56
MluCI	AATT	2 cut(s)	56, 186
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	1 cut(s)	152
MseI	TTAA	1 cut(s)	104
MunI	CAATTG	1 cut(s)	56
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	21
PciSI	GCTCTTC	1 cut(s)	3
PfeI	GAWTC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PstNI	CAGNNNCTG	1 cut(s)	46
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	3
SaqAI	TTAA	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	94
SchI	GAGTC	1 cut(s)	76
SetI	ASST	7 cut(s)	15, 126, 144, 168, 180, 186, 222
SgeI	CNNG	9 cut(s)	30, 34, 49, 59, 131, 164, 175, 206, 214
Sse9I	AATT	2 cut(s)	56, 186
SseBI	AGGCCT	1 cut(s)	21
StuI	AGGCCT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	162
TasI	AATT	2 cut(s)	56, 186
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	101, 126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.