Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003290

Physical Location & Seq

Genomic Coordinates Reverse (-)

58952469 .. 58973516

Gene Structure 21048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG437700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGAAGGGGAAAGATTGTGATAAGGAGGATTGACAATTCAACGAGCAGGCAGGTGACGTTTTCGAAGCGGAGGAATGGATTGTTGAAGAAGGCCAGAGAACTGGCGATCCTGTGCGATGCTGAGGTCGGAGTCATGATCTTCTCCAGCACCGGCAAGCTCTACGATTTCGCAAGCACCAGCATAAAGTCAGTGATCGAAAGATATGGCAAAGCAAAAGAGGAGCATCATCAATTTGGCAACCCGGCTTCTGAAGTTAAGTTATGGCAAAGGGAAGCAGCAATGTTAAGGCAACAACTTCAAAACTTGCAAGAGAGCCATAGGCAAATGATGGGTGAAGAGCTTTCAGGCCTGAGTGTGAAAGACTTGCAGAATCTGGAGAACCAATTGGAAATGAGTCTTAAGGGTGTCCGAATGAAAAAGGATCAACTTTTAATGGATGAAATACAAGAGCTAAACAGAAAGGGAAACCTCATTCACCAAGAAAATGTCGAGCTGTATAAGAAGGTAAACCTAATTCGTGAAGAAAACATGGAACTATATAAGAAGGTACTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

186

Amino Acids

21.59

Weight (kDa)

9.49

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.5e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	84 - 170	2.2e-29	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41440 AT2G41440 AT2G41440 AT2G41440 AT2G41445 AT2G41445 AT2G41445 AT2G41445 AT2G41470 AT2G41470 AT3G57230 AT3G57230 AT3G57230 AT3G57230 AT3G57230
fragaria_vesca	FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080
malus_domestica	MD08G1206400.v1.1 MD15G1389800.v1.1
prunus_persica	Prupe.1G538700_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1
rosa_laevigata	RLG00000001252
rosa_multiflora	Rmu_sc0000029.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227200
rosa_rugosa	Rorug07G0281200
rosa_samantha	Rh7AG437700 Rh7BG410400 Rh7CG457400
rosa_wichuraiana	Rw7G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	2 cut(s)	103, 432
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	1 cut(s)	552
AflII	CTTAAG	1 cut(s)	401
AgsI	TTSAA	3 cut(s)	42, 88, 302
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	4 cut(s)	160, 343, 454, 496
AluI	AGCT	4 cut(s)	160, 343, 454, 496
AlwI	GGATC	2 cut(s)	103, 432
AlwNI	CAGNNNCTG	1 cut(s)	376
AoxI	GGCC	2 cut(s)	93, 349
ApeKI	GCWGC	1 cut(s)	278
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	3 cut(s)	67, 347, 470
AsuII	TTCGAA	1 cut(s)	65
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	245
BfrI	CTTAAG	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	2 cut(s)	109, 235
BpmI	CTGGAG	2 cut(s)	130, 398
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	108, 558
Bse3DI	GCAATG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	445
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	114, 344
BseNI	ACTGG	2 cut(s)	108, 558
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	290
BshFI	GGCC	2 cut(s)	95, 351
BsiSI	CCGG	2 cut(s)	153, 245
BsnI	GGCC	2 cut(s)	95, 351
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	108, 138, 195, 424
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	95, 351
BspCNI	CTCAG	2 cut(s)	115, 345
BspHI	TCATGA	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	103, 432
BspQI	GCTCTTC	1 cut(s)	333
BspT104I	TTCGAA	1 cut(s)	65
BspTI	CTTAAG	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	108, 558
BssAI	RCCGGY	1 cut(s)	152
BssMI	GATC	4 cut(s)	108, 138, 195, 424
Bst6I	CTCTTC	1 cut(s)	333
BstAFI	CTTAAG	1 cut(s)	401
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	50, 158, 175
BstDEI	CTNAG	2 cut(s)	123, 353
BstF5I	GGATG	1 cut(s)	445
BstKTI	GATC	4 cut(s)	111, 141, 198, 427
BstMBI	GATC	4 cut(s)	108, 138, 195, 424
BstSCI	CCNGG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	290
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	95, 351
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	50, 158, 175
CaiI	CAGNNNCTG	1 cut(s)	376
CciI	TCATGA	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	551
CviAII	CATG	2 cut(s)	136, 532
CviJI	RGCY	8 cut(s)	95, 160, 248, 318, 343, 351, 454, 496
CviKI_1	RGCY	8 cut(s)	95, 160, 248, 318, 343, 351, 454, 496
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	2 cut(s)	123, 353
DpnI	GATC	4 cut(s)	110, 140, 197, 426
DpnII	GATC	4 cut(s)	108, 138, 195, 424
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	273
FaeI	CATG	2 cut(s)	139, 535
FaiI	YATR	9 cut(s)	137, 185, 207, 265, 321, 501, 533, 541, 543
FatI	CATG	2 cut(s)	135, 531
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	279
GsuI	CTGGAG	2 cut(s)	130, 398
HaeIII	GGCC	2 cut(s)	95, 351
HapII	CCGG	2 cut(s)	153, 245
Hin1II	CATG	2 cut(s)	139, 535
HinfI	GANTC	3 cut(s)	132, 373, 397
HpaII	CCGG	2 cut(s)	153, 245
HphI	GGTGA	3 cut(s)	67, 347, 470
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	3 cut(s)	131, 253, 413
Hpy188III	TCNNGA	3 cut(s)	136, 377, 521
Hpy8I	GTNNAC	1 cut(s)	511
HpyAV	CCTTC	3 cut(s)	85, 499, 541
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	310, 370
HpyF3I	CTNAG	2 cut(s)	123, 353
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	139, 535
Kzo9I	GATC	4 cut(s)	108, 138, 195, 424
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	2 cut(s)	109, 235
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	110, 140, 197, 426
MboI	GATC	4 cut(s)	108, 138, 195, 424
MboII	GAAGA	4 cut(s)	100, 133, 350, 536
MfeI	CAATTG	1 cut(s)	386
MluCI	AATT	4 cut(s)	37, 233, 386, 516
MlyI	GAGTC	2 cut(s)	141, 406
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	5 cut(s)	21, 66, 118, 214, 482
MseI	TTAA	4 cut(s)	258, 287, 402, 434
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	2 cut(s)	153, 245
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	386
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	4 cut(s)	108, 138, 195, 424
NlaIII	CATG	2 cut(s)	139, 535
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	65
PagI	TCATGA	1 cut(s)	135
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	2 cut(s)	140, 405
PpsI	GAGTC	2 cut(s)	140, 405
PstNI	CAGNNNCTG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	4 cut(s)	258, 287, 402, 434
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	4 cut(s)	108, 138, 195, 424
SchI	GAGTC	2 cut(s)	141, 406
ScrFI	CCNGG	1 cut(s)	245
SfaNI	GCATC	2 cut(s)	109, 235
SfuI	TTCGAA	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	4 cut(s)	37, 233, 386, 516
SseBI	AGGCCT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	70
StuI	AGGCCT	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	65, 198, 492
TasI	AATT	4 cut(s)	37, 233, 386, 516
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	4 cut(s)	258, 287, 402, 434
Tru9I	TTAA	4 cut(s)	258, 287, 402, 434
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	431, 456
TspRI	CASTG	1 cut(s)	198
Vha464I	CTTAAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.