Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003290

Physical Location & Seq

Genomic Coordinates Reverse (-)

60178329 .. 60200428

Gene Structure 22100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG457400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGAAGGGGAAAGATTGTGATAAGGAGGATTGACAATTCAACGAGCAGGCAGGTGACGTTTTCGAAGCGGAGGAATGGATTGTTGAAGAAGGCCAGAGAACTGGCTATCCTGTGCGATGCTGAGGTCGGAGTCATGATCTTCTCCAGCACCGGCAAGCTCTACGATTTCGCAAGCACCAGCATAAAGTCAGTGATCGAAAGATATGGCAAAGCAAAAGAGGAGCATCATCAATTTGGCAACCCGGCTTCTGAAGTTAAGTTATGGCAAAGGGAAGCAGCAATGTTAAGGCAACAACTTCAAAACTTGCAAGAGAGCCATAGGCAAATGATGGGTGAAGAGCTTTCAGGCCTGAGTGTGAAAGACTTGCAGAATCTGGAGAACCAATTGGAAATGAGTCTTAGGGGTGTCCGAATGAAAAAGGATCAACTTTTAATGGATGAAATACAAGAGCTAAACAGAAAGGGAAACCTCATTCACCAAGAAAATATCGAGCTGTATAAGAAGGTAAACCTAATTCGTGAAGAAAACATGGAACTATATAAGAAGGTTTATGGAACAAGGGATGTAAATGGAGCAAATAGAAATCCCTTTCTGACAAATGGTCTAGACATTGGAGAGGACACACATGAACCAGTCAATCTCCAGCTTAGTCAGCCACAGCAGCAAAACTATGAAGAACCAGCAAGAGCTACAAAGCTAGGACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

236

Amino Acids

27.18

Weight (kDa)

9.06

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.3e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	84 - 170	6e-29	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41440 AT2G41440 AT2G41440 AT2G41440 AT2G41445 AT2G41445 AT2G41445 AT2G41445 AT2G41470 AT2G41470 AT3G57230 AT3G57230 AT3G57230 AT3G57230 AT3G57230
fragaria_vesca	FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080
malus_domestica	MD08G1206400.v1.1 MD15G1389800.v1.1
prunus_persica	Prupe.1G538700_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1
rosa_laevigata	RLG00000001252
rosa_multiflora	Rmu_sc0000029.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227200
rosa_rugosa	Rorug07G0281200
rosa_samantha	Rh7AG437700 Rh7BG410400 Rh7CG457400
rosa_wichuraiana	Rw7G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	432
AcuI	CTGAAG	1 cut(s)	273
AgsI	TTSAA	3 cut(s)	42, 88, 302
AhdI	GACNNNNNGTC	1 cut(s)	603
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	7 cut(s)	160, 343, 454, 496, 649, 692, 700
AluI	AGCT	7 cut(s)	160, 343, 454, 496, 649, 692, 700
AlwI	GGATC	1 cut(s)	432
AlwNI	CAGNNNCTG	1 cut(s)	376
AoxI	GGCC	2 cut(s)	93, 349
ApeKI	GCWGC	2 cut(s)	278, 664
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	3 cut(s)	67, 347, 470
AsuII	TTCGAA	1 cut(s)	65
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	290, 676
BccI	CCATC	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	245
BfaI	CTAG	2 cut(s)	608, 701
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	279, 665
BlsI	GCNGC	2 cut(s)	280, 666
Bme1390I	CCNGG	1 cut(s)	245
BmeRI	GACNNNNNGTC	1 cut(s)	603
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	2 cut(s)	109, 235
BpmI	CTGGAG	3 cut(s)	130, 398, 629
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	108, 635
Bse3DI	GCAATG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	445, 571
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	114, 344
BseNI	ACTGG	2 cut(s)	108, 635
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	290, 676
BshFI	GGCC	2 cut(s)	95, 351
BsiSI	CCGG	2 cut(s)	153, 245
BsnI	GGCC	2 cut(s)	95, 351
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	138, 195, 424
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	95, 351
BspCNI	CTCAG	2 cut(s)	115, 345
BspHI	TCATGA	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	432
BspQI	GCTCTTC	1 cut(s)	333
BspT104I	TTCGAA	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	108, 635
BssAI	RCCGGY	1 cut(s)	152
BssMI	GATC	3 cut(s)	138, 195, 424
Bst6I	CTCTTC	1 cut(s)	333
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	50, 158, 175
BstDEI	CTNAG	4 cut(s)	123, 353, 401, 650
BstF5I	GGATG	2 cut(s)	445, 571
BstKTI	GATC	3 cut(s)	141, 198, 427
BstMBI	GATC	3 cut(s)	138, 195, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	655, 664
BstSCI	CCNGG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	290, 676
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	95, 351
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	445, 571
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	50, 158, 175
CaiI	CAGNNNCTG	1 cut(s)	376
CciI	TCATGA	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	152
CviAII	CATG	3 cut(s)	136, 532, 629
DdeI	CTNAG	4 cut(s)	123, 353, 401, 650
DpnI	GATC	3 cut(s)	140, 197, 426
DpnII	GATC	3 cut(s)	138, 195, 424
DriI	GACNNNNNGTC	1 cut(s)	603
Eam1104I	CTCTTC	1 cut(s)	333
Eam1105I	GACNNNNNGTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	273
FaeI	CATG	3 cut(s)	139, 535, 632
FatI	CATG	3 cut(s)	135, 531, 628
Fnu4HI	GCNGC	2 cut(s)	279, 665
FokI	GGATG	2 cut(s)	452, 578
Fsp4HI	GCNGC	2 cut(s)	279, 665
FspBI	CTAG	2 cut(s)	608, 701
GluI	GCNGC	2 cut(s)	279, 665
GsuI	CTGGAG	3 cut(s)	130, 398, 629
HaeIII	GGCC	2 cut(s)	95, 351
HapII	CCGG	2 cut(s)	153, 245
Hin1II	CATG	3 cut(s)	139, 535, 632
HinfI	GANTC	3 cut(s)	132, 373, 397
HpaII	CCGG	2 cut(s)	153, 245
HphI	GGTGA	3 cut(s)	67, 347, 470
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	4 cut(s)	131, 253, 413, 597
Hpy188III	TCNNGA	4 cut(s)	136, 377, 521, 608
Hpy8I	GTNNAC	1 cut(s)	511
HpyAV	CCTTC	3 cut(s)	85, 499, 541
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	310, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	655, 664
HpyF3I	CTNAG	4 cut(s)	123, 353, 401, 650
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	3 cut(s)	139, 535, 632
Kzo9I	GATC	3 cut(s)	138, 195, 424
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	2 cut(s)	223, 575
Lsp1109I	GCAGC	2 cut(s)	290, 676
LweI	GCATC	2 cut(s)	109, 235
MaeI	CTAG	2 cut(s)	608, 701
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	140, 197, 426
MboI	GATC	3 cut(s)	138, 195, 424
MboII	GAAGA	5 cut(s)	100, 133, 350, 536, 689
MfeI	CAATTG	1 cut(s)	386
MluCI	AATT	4 cut(s)	37, 233, 386, 516
MlyI	GAGTC	2 cut(s)	141, 406
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	6 cut(s)	21, 66, 118, 214, 482, 613
MseI	TTAA	3 cut(s)	258, 287, 434
MspI	CCGG	2 cut(s)	153, 245
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	386
MwoI	GCNNNNNNNGC	2 cut(s)	655, 664
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	3 cut(s)	138, 195, 424
NlaIII	CATG	3 cut(s)	139, 535, 632
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	65
PagI	TCATGA	1 cut(s)	135
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	280, 666
PleI	GAGTC	2 cut(s)	140, 405
PpsI	GAGTC	2 cut(s)	140, 405
PstNI	CAGNNNCTG	1 cut(s)	376
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	258, 287, 434
SatI	GCNGC	2 cut(s)	279, 665
Sau3AI	GATC	3 cut(s)	138, 195, 424
SchI	GAGTC	2 cut(s)	141, 406
ScrFI	CCNGG	1 cut(s)	245
SfaNI	GCATC	2 cut(s)	109, 235
SfuI	TTCGAA	1 cut(s)	65
Sse9I	AATT	4 cut(s)	37, 233, 386, 516
SseBI	AGGCCT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	2 cut(s)	608, 701
StuI	AGGCCT	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	65, 198, 492
TasI	AATT	4 cut(s)	37, 233, 386, 516
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	3 cut(s)	258, 287, 434
Tru9I	TTAA	3 cut(s)	258, 287, 434
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	278, 664
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	431, 456, 645, 690
TspRI	CASTG	1 cut(s)	198
XbaI	TCTAGA	1 cut(s)	607
XspI	CTAG	2 cut(s)	608, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.