Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003290

Physical Location & Seq

Genomic Coordinates Reverse (-)

54284523 .. 54303561

Gene Structure 19039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G036090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGGAAGGGGAAAGATTGTGATAAGGAGGATTGACAATTCAACGAGCAGGCAGGTGACGTTTTCGAAGCGGAGGAATGGATTGTTGAAGAAGGCCAGAGAACTGGCGATCCTGTGCGATGCTGAGGTCGGAGTCATGATCTTCTCCAGCACCGGCAAGCTCTACGATTTCGCAAGCACCAGCATAAAGTCAGTGATCGAAAGATATGGCAAAGCAAAAGAGGAGCATCATCAATTTAGCAACCCAGCTTCTGAAGTTAAGTTATGGCAAAGGGAAGCAGCAATGTTAAGGCAACAACTTCAAAACTTGCAAGAGAGCCATAGGCAAATGATGGGTGAAGAGCTTTCAGGCCTGAGTGTGAAGGACTTGCAGAATCTGGAGAACCAATTGGAAATCAGTCTTAGGGGTGTCCGAATGAAAAAGGATCAACTTTTAATGGATGAAATACAAGAGCTAAACAGAAAGGGAAACCTCATTCATCAAGAAAATGTCGAGCTGTATAAGAAGGTAAACCTAATTCGTGAAGAAAACATGGAACTATATAAGAAGGTTTATGGAACAAGGGATGTAAATGGAGCAAATAGAAATCCCTTTCTGACAAATGGTCTAGACATTGGAGAGGACACACATGAACCAGTCAATCTCCAGCTTAGTCAGCCACAGCAGCAAAACTATGAAGAACCAGCAAGAGCAACAAAGCTGGGGTATAATGCCCTTCCTAAAACTACACTTGAATTGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

247

Amino Acids

28.47

Weight (kDa)

9.17

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.5e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	83 - 170	5.8e-29	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41440 AT2G41440 AT2G41440 AT2G41440 AT2G41445 AT2G41445 AT2G41445 AT2G41445 AT2G41470 AT2G41470 AT3G57230 AT3G57230 AT3G57230 AT3G57230 AT3G57230
fragaria_vesca	FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080
malus_domestica	MD08G1206400.v1.1 MD15G1389800.v1.1
prunus_persica	Prupe.1G538700_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1
rosa_laevigata	RLG00000001252
rosa_multiflora	Rmu_sc0000029.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227200
rosa_rugosa	Rorug07G0281200
rosa_samantha	Rh7AG437700 Rh7BG410400 Rh7CG457400
rosa_wichuraiana	Rw7G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	2 cut(s)	103, 432
AcuI	CTGAAG	1 cut(s)	273
AgsI	TTSAA	4 cut(s)	42, 88, 302, 734
AhdI	GACNNNNNGTC	1 cut(s)	603
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	7 cut(s)	160, 248, 343, 454, 496, 649, 700
AluI	AGCT	7 cut(s)	160, 248, 343, 454, 496, 649, 700
AlwI	GGATC	2 cut(s)	103, 432
AlwNI	CAGNNNCTG	2 cut(s)	251, 376
AoxI	GGCC	2 cut(s)	93, 349
ApeKI	GCWGC	2 cut(s)	278, 664
AsuHPI	GGTGA	2 cut(s)	67, 347
AsuII	TTCGAA	1 cut(s)	65
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	290, 676
BccI	CCATC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	608
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	279, 665
BlsI	GCNGC	2 cut(s)	280, 666
BmeRI	GACNNNNNGTC	1 cut(s)	603
BmsI	GCATC	2 cut(s)	109, 235
BpmI	CTGGAG	3 cut(s)	130, 398, 629
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	108, 635
Bse3DI	GCAATG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	445, 571
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	114, 344
BseNI	ACTGG	2 cut(s)	108, 635
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	290, 676
BseYI	CCCAGC	2 cut(s)	244, 700
BshFI	GGCC	2 cut(s)	95, 351
BsiSI	CCGG	1 cut(s)	153
BsnI	GGCC	2 cut(s)	95, 351
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	108, 138, 195, 424
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	95, 351
BspCNI	CTCAG	2 cut(s)	115, 345
BspHI	TCATGA	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	103, 432
BspQI	GCTCTTC	1 cut(s)	333
BspT104I	TTCGAA	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	108, 635
BssAI	RCCGGY	1 cut(s)	152
BssMI	GATC	4 cut(s)	108, 138, 195, 424
Bst6I	CTCTTC	1 cut(s)	333
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	50, 158, 175
BstDEI	CTNAG	4 cut(s)	123, 353, 401, 650
BstF5I	GGATG	2 cut(s)	445, 571
BstKTI	GATC	4 cut(s)	111, 141, 198, 427
BstMBI	GATC	4 cut(s)	108, 138, 195, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	655, 664
BstV1I	GCAGC	2 cut(s)	290, 676
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	95, 351
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	445, 571
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	50, 158, 175
CaiI	CAGNNNCTG	2 cut(s)	251, 376
CciI	TCATGA	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	152
CviAII	CATG	3 cut(s)	136, 532, 629
DdeI	CTNAG	4 cut(s)	123, 353, 401, 650
DpnI	GATC	4 cut(s)	110, 140, 197, 426
DpnII	GATC	4 cut(s)	108, 138, 195, 424
DriI	GACNNNNNGTC	1 cut(s)	603
Eam1104I	CTCTTC	1 cut(s)	333
Eam1105I	GACNNNNNGTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	273
FaeI	CATG	3 cut(s)	139, 535, 632
FatI	CATG	3 cut(s)	135, 531, 628
Fnu4HI	GCNGC	2 cut(s)	279, 665
FokI	GGATG	2 cut(s)	452, 578
Fsp4HI	GCNGC	2 cut(s)	279, 665
FspBI	CTAG	1 cut(s)	608
GluI	GCNGC	2 cut(s)	279, 665
GsaI	CCCAGC	2 cut(s)	248, 704
GsuI	CTGGAG	3 cut(s)	130, 398, 629
HaeIII	GGCC	2 cut(s)	95, 351
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	3 cut(s)	139, 535, 632
HinfI	GANTC	2 cut(s)	132, 373
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	2 cut(s)	67, 347
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	4 cut(s)	131, 253, 413, 597
Hpy188III	TCNNGA	5 cut(s)	136, 377, 482, 521, 608
Hpy8I	GTNNAC	1 cut(s)	511
HpyAV	CCTTC	5 cut(s)	85, 355, 499, 541, 725
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	310, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	655, 664
HpyF3I	CTNAG	4 cut(s)	123, 353, 401, 650
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	3 cut(s)	139, 535, 632
Kzo9I	GATC	4 cut(s)	108, 138, 195, 424
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	2 cut(s)	223, 575
Lsp1109I	GCAGC	2 cut(s)	290, 676
LweI	GCATC	2 cut(s)	109, 235
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	110, 140, 197, 426
MboI	GATC	4 cut(s)	108, 138, 195, 424
MboII	GAAGA	5 cut(s)	100, 133, 350, 536, 689
MfeI	CAATTG	1 cut(s)	386
MluCI	AATT	5 cut(s)	37, 233, 386, 516, 734
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	6 cut(s)	21, 66, 118, 214, 482, 613
MseI	TTAA	3 cut(s)	258, 287, 434
MspI	CCGG	1 cut(s)	153
MunI	CAATTG	1 cut(s)	386
MwoI	GCNNNNNNNGC	2 cut(s)	655, 664
NdeII	GATC	4 cut(s)	108, 138, 195, 424
NlaIII	CATG	3 cut(s)	139, 535, 632
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	65
PagI	TCATGA	1 cut(s)	135
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	280, 666
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PspFI	CCCAGC	2 cut(s)	244, 700
PstNI	CAGNNNCTG	2 cut(s)	251, 376
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	258, 287, 434
SatI	GCNGC	2 cut(s)	279, 665
Sau3AI	GATC	4 cut(s)	108, 138, 195, 424
SchI	GAGTC	1 cut(s)	141
SfaNI	GCATC	2 cut(s)	109, 235
SfuI	TTCGAA	1 cut(s)	65
Sse9I	AATT	5 cut(s)	37, 233, 386, 516, 734
SseBI	AGGCCT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	608
StuI	AGGCCT	1 cut(s)	351
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	65, 198, 492
TasI	AATT	5 cut(s)	37, 233, 386, 516, 734
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	3 cut(s)	258, 287, 434
Tru9I	TTAA	3 cut(s)	258, 287, 434
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	278, 664
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	5 cut(s)	431, 456, 467, 645, 690
TspRI	CASTG	1 cut(s)	198
XbaI	TCTAGA	1 cut(s)	607
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.