Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003290

Physical Location & Seq

Genomic Coordinates Forward (+)

44031155 .. 44033143

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G538700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGGAAGGGGTAAGATTGTGATAAGGAGGATTGACAATTCGACAAGCCGCCAAGTGACGTTTTCGAAGCGGAGGAACGGGCTGCTGAAGAAGGCCAAGGAGCTGGCGATCTTATGCGACGCGGAGGTCGGAGTTATGATCTTCTCCAGCACCGGCAAGCTCTATGATTTTGCAAGCACCAGATTCAGATTCATTGCCATTTGGACCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

71

Amino Acids

7.94

Weight (kDa)

10.97

Isoelectric Point (pI)

32.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41440 AT2G41440 AT2G41440 AT2G41440 AT2G41445 AT2G41445 AT2G41445 AT2G41445 AT2G41470 AT2G41470 AT3G57230 AT3G57230 AT3G57230 AT3G57230 AT3G57230
fragaria_vesca	FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080
malus_domestica	MD08G1206400.v1.1 MD15G1389800.v1.1
prunus_persica	Prupe.1G538700_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1
rosa_laevigata	RLG00000001252
rosa_multiflora	Rmu_sc0000029.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227200
rosa_rugosa	Rorug07G0281200
rosa_samantha	Rh7AG437700 Rh7BG410400 Rh7CG457400
rosa_wichuraiana	Rw7G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AccII	CGCG	1 cut(s)	122
AciI	CCGC	4 cut(s)	49, 70, 122, 207
AcuI	CTGAAG	1 cut(s)	107
AluBI	AGCT	2 cut(s)	103, 160
AluI	AGCT	2 cut(s)	103, 160
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	204
AsuII	TTCGAA	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	69
BisI	GCNGC	2 cut(s)	49, 83
BlsI	GCNGC	2 cut(s)	50, 84
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	96
Bse118I	RCCGGY	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	153
BsnI	GGCC	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	108, 138
BspACI	CCGC	4 cut(s)	49, 70, 122, 207
BspANI	GGCC	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	122
BspT104I	TTCGAA	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	108, 138
BssT1I	CCWWGG	1 cut(s)	96
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	105, 158, 175
BstFNI	CGCG	1 cut(s)	122
BstKTI	GATC	2 cut(s)	111, 141
BstMBI	GATC	2 cut(s)	108, 138
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	95
Cac8I	GCNNGC	3 cut(s)	105, 158, 175
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	204
CseI	GACGC	1 cut(s)	128
CviJI	RGCY	5 cut(s)	48, 82, 95, 103, 160
CviKI_1	RGCY	5 cut(s)	48, 82, 95, 103, 160
DpnI	GATC	2 cut(s)	110, 140
DpnII	GATC	2 cut(s)	108, 138
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaiI	YATR	3 cut(s)	115, 137, 165
Fnu4HI	GCNGC	2 cut(s)	49, 83
Fsp4HI	GCNGC	2 cut(s)	49, 83
GluI	GCNGC	2 cut(s)	49, 83
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	128
HinfI	GANTC	2 cut(s)	183, 189
HpaII	CCGG	1 cut(s)	153
Hpy188I	TCNGA	2 cut(s)	131, 188
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	59
Kzo9I	GATC	2 cut(s)	108, 138
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	4 cut(s)	89, 160, 166, 193
Lsp1109I	GCAGC	1 cut(s)	69
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	110, 140
MboI	GATC	2 cut(s)	108, 138
MboII	GAAGA	2 cut(s)	100, 133
MluCI	AATT	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	3 cut(s)	21, 66, 118
MspI	CCGG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	122
NdeII	GATC	2 cut(s)	108, 138
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	183, 189
PkrI	GCNGC	2 cut(s)	50, 84
PspPI	GGNCC	1 cut(s)	204
SatI	GCNGC	2 cut(s)	49, 83
Sau3AI	GATC	2 cut(s)	108, 138
Sau96I	GGNCC	1 cut(s)	204
SetI	ASST	4 cut(s)	62, 105, 129, 162
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	1 cut(s)	204
Sse9I	AATT	1 cut(s)	37
SsiI	CCGC	4 cut(s)	49, 70, 122, 207
StyI	CCWWGG	1 cut(s)	96
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	2 cut(s)	41, 65
TasI	AATT	1 cut(s)	37
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	183, 189
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.