Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003290

Physical Location & Seq

Genomic Coordinates Reverse (-)

24694295 .. 24717834

Gene Structure 23540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g34080.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGAAGGGGAAAGATTGTGATAAGGAGGATCGACAACTCAACCAGCAGGCAGGTGACGTTTTCGAAACGGAGGAATGGATTGTTGAAGAAGGCCAAAGAACTGGCGATCCTGTGTGATGCTGAGGTCGGAGTCATGATCTTCTCGAGCACCGGCAAGCTCTATGAATTCGCAAGCACCAGCATAAAGTCAGTGATTGAAAGATACACCAAAGCAAAAGAGGAGCATCATCAATTTGGCGACCCTGCTTCTGAAGTTAAGTTATGGCAAAGGGAAGCAGCAATGTTAAGGCAGCAACTACACACCTTGCAAGAGAGCCATAGGCAAATGATGGGTGAAGAGCTTTCAGGCCTGAGTGTGAAAGACTTGCAAAATCTGGAGAACCAATTGGAAATAAGTCTTAAGGGTGTCCGAATGAAAAAGGATCAGCTTTTAATGGATGAAATACAAGACCTAAACAGAAAGGGAAACCTCATTCACCAAGAAAATGTCGAGCTGTATAAGAAGGTTTATGGAACAAGGGATGTAAGTGGAGCAAATAGAAATCCCTTTCTGACAAATGGTCTAGACATTGGAGAGGACTCACATGGGCCTGTCAATCTCCAGCTTAGTCAACCACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

208

Amino Acids

23.56

Weight (kDa)

9.12

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	9.7e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	84 - 170	5.4e-29	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41440 AT2G41440 AT2G41440 AT2G41440 AT2G41445 AT2G41445 AT2G41445 AT2G41445 AT2G41470 AT2G41470 AT3G57230 AT3G57230 AT3G57230 AT3G57230 AT3G57230
fragaria_vesca	FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080
malus_domestica	MD08G1206400.v1.1 MD15G1389800.v1.1
prunus_persica	Prupe.1G538700_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1
rosa_laevigata	RLG00000001252
rosa_multiflora	Rmu_sc0000029.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227200
rosa_rugosa	Rorug07G0281200
rosa_samantha	Rh7AG437700 Rh7BG410400 Rh7CG457400
rosa_wichuraiana	Rw7G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AclWI	GGATC	3 cut(s)	38, 103, 432
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	273
AflII	CTTAAG	1 cut(s)	401
AgsI	TTSAA	2 cut(s)	88, 200
AhdI	GACNNNNNGTC	1 cut(s)	561
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	5 cut(s)	160, 343, 430, 496, 607
AluI	AGCT	5 cut(s)	160, 343, 430, 496, 607
Alw21I	GWGCWC	1 cut(s)	152
AlwI	GGATC	3 cut(s)	38, 103, 432
Ama87I	CYCGRG	1 cut(s)	145
AoxI	GGCC	3 cut(s)	93, 349, 590
ApeKI	GCWGC	2 cut(s)	278, 292
ApoI	RAATTY	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	590
AsuHPI	GGTGA	3 cut(s)	67, 347, 470
AsuII	TTCGAA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	152
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	290, 304
BccI	CCATC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	566
BfrI	CTTAAG	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	279, 293
BlsI	GCNGC	2 cut(s)	280, 294
BmeRI	GACNNNNNGTC	1 cut(s)	561
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	590
BmsI	GCATC	2 cut(s)	109, 235
BpmI	CTGGAG	2 cut(s)	398, 587
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	445, 529
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	114, 344
BseNI	ACTGG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	290, 304
BshFI	GGCC	3 cut(s)	95, 351, 592
BsiHKAI	GWGCWC	1 cut(s)	152
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	153
BsnI	GGCC	3 cut(s)	95, 351, 592
BsoBI	CYCGRG	1 cut(s)	145
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp143I	GATC	4 cut(s)	30, 108, 138, 424
BspANI	GGCC	3 cut(s)	95, 351, 592
BspCNI	CTCAG	2 cut(s)	115, 345
BspHI	TCATGA	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	38, 103, 432
BspQI	GCTCTTC	1 cut(s)	333
BspT104I	TTCGAA	1 cut(s)	65
BspTI	CTTAAG	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	152
BssMI	GATC	4 cut(s)	30, 108, 138, 424
Bst6I	CTCTTC	1 cut(s)	333
BstAFI	CTTAAG	1 cut(s)	401
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	50, 158, 175
BstDEI	CTNAG	3 cut(s)	123, 353, 608
BstF5I	GGATG	2 cut(s)	445, 529
BstKTI	GATC	4 cut(s)	33, 111, 141, 427
BstMBI	GATC	4 cut(s)	30, 108, 138, 424
BstV1I	GCAGC	2 cut(s)	290, 304
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuRI	GGCC	3 cut(s)	95, 351, 592
BtsCI	GGATG	2 cut(s)	445, 529
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	50, 158, 175
CciI	TCATGA	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	590
CviAII	CATG	2 cut(s)	136, 587
CviJI	RGCY	9 cut(s)	95, 160, 318, 343, 351, 430, 496, 592, 607
CviKI_1	RGCY	9 cut(s)	95, 160, 318, 343, 351, 430, 496, 592, 607
DdeI	CTNAG	3 cut(s)	123, 353, 608
DpnI	GATC	4 cut(s)	32, 110, 140, 426
DpnII	GATC	4 cut(s)	30, 108, 138, 424
DriI	GACNNNNNGTC	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	333
Eam1105I	GACNNNNNGTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	167
FaeI	CATG	2 cut(s)	139, 590
FaiI	YATR	8 cut(s)	137, 165, 185, 265, 321, 501, 513, 588
FatI	CATG	2 cut(s)	135, 586
Fnu4HI	GCNGC	2 cut(s)	279, 293
FokI	GGATG	2 cut(s)	452, 536
Fsp4HI	GCNGC	2 cut(s)	279, 293
FspBI	CTAG	1 cut(s)	566
GluI	GCNGC	2 cut(s)	279, 293
GsuI	CTGGAG	2 cut(s)	398, 587
HaeIII	GGCC	3 cut(s)	95, 351, 592
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	2 cut(s)	139, 590
HincII	GTYRAC	1 cut(s)	614
HindII	GTYRAC	1 cut(s)	614
HinfI	GANTC	2 cut(s)	132, 581
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	3 cut(s)	67, 347, 470
Hpy166II	GTNNAC	1 cut(s)	614
Hpy188I	TCNGA	4 cut(s)	131, 253, 413, 555
Hpy188III	TCNNGA	4 cut(s)	136, 145, 377, 566
Hpy8I	GTNNAC	1 cut(s)	614
HpyAV	CCTTC	2 cut(s)	85, 499
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	310, 370
HpyF3I	CTNAG	3 cut(s)	123, 353, 608
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	139, 590
Kzo9I	GATC	4 cut(s)	30, 108, 138, 424
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	2 cut(s)	223, 533
Lsp1109I	GCAGC	2 cut(s)	290, 304
LweI	GCATC	2 cut(s)	109, 235
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	32, 110, 140, 426
MboI	GATC	4 cut(s)	30, 108, 138, 424
MboII	GAAGA	3 cut(s)	100, 133, 350
MfeI	CAATTG	1 cut(s)	386
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	3 cut(s)	167, 233, 386
MlyI	GAGTC	2 cut(s)	141, 575
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	6 cut(s)	21, 66, 118, 214, 482, 571
MseI	TTAA	4 cut(s)	258, 287, 402, 434
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	1 cut(s)	153
MunI	CAATTG	1 cut(s)	386
NdeII	GATC	4 cut(s)	30, 108, 138, 424
NlaIII	CATG	2 cut(s)	139, 590
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	145
PagI	TCATGA	1 cut(s)	135
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	333
PkrI	GCNGC	2 cut(s)	280, 294
PleI	GAGTC	2 cut(s)	140, 575
PpsI	GAGTC	2 cut(s)	140, 575
PspPI	GGNCC	1 cut(s)	590
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	4 cut(s)	258, 287, 402, 434
SatI	GCNGC	2 cut(s)	279, 293
Sau3AI	GATC	4 cut(s)	30, 108, 138, 424
Sau96I	GGNCC	1 cut(s)	590
SchI	GAGTC	2 cut(s)	141, 575
SduI	GDGCHC	1 cut(s)	152
SfaNI	GCATC	2 cut(s)	109, 235
Sfr274I	CTCGAG	1 cut(s)	145
SfuI	TTCGAA	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	145
SmlI	CTYRAG	2 cut(s)	145, 401
SmoI	CTYRAG	2 cut(s)	145, 401
Sse9I	AATT	3 cut(s)	167, 233, 386
SseBI	AGGCCT	1 cut(s)	351
SspMI	CTAG	1 cut(s)	566
StuI	AGGCCT	1 cut(s)	351
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	4 cut(s)	33, 65, 146, 492
TasI	AATT	3 cut(s)	167, 233, 386
Tru1I	TTAA	4 cut(s)	258, 287, 402, 434
Tru9I	TTAA	4 cut(s)	258, 287, 402, 434
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	278, 292
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	180, 431, 456
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	1 cut(s)	198
Vha464I	CTTAAG	1 cut(s)	401
XapI	RAATTY	1 cut(s)	167
XbaI	TCTAGA	1 cut(s)	565
XhoI	CTCGAG	1 cut(s)	145
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.