Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003290

Physical Location & Seq

Genomic Coordinates Reverse (-)

17289952 .. 17293749

Gene Structure 3798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGTGCAACTACTGCGAGTTCTCCAGCAACAGATATGGATGTGGCTCCTCTGAACAAGACAATGTGCTGCGGGAAAAGGTGGAGAGATTACGGTTTTTGATCAAGAGAATGACTGGAAAAGACGACGATGCTCATTTCACCGAGCTGCAAGCACTTGAAAGTCGTCTTAAGGATGTTAGTCGCACTGTGTTGGACCAAAAGGAGAAGATGATAAAGCTAGAAGAAGACGAAAGGAAGAAGGAAGCTCAGAATGAGAGTGATGGTACGAGGAGAGGGGTTTTGGTCCCATGCAACAGCTCTGAACAAAGACAACGAGATGATGGAGCGCTGCTGCTGTTAAAGAAGGCGAGATTCGAGAGAAGATACTCTGAATCATTGCAGAGCGAGTTTGAGAGATTGTGGCTTGTTAACGAGAGAATGAACGGTAGAGAGCTCGAGGGTATGTCATCTCGTGACCTGCTCTCACTTGACAATCAGATATTAAATGCTTTGTTGGGTTTGCTTGTCCAAATGAATAGACCAAGGGAGGAACAAGTTGCTGCAAGGCAGCGCGAGAAGAACAATAAGGAATCAACCTCAAGGTTAGCTGAACAAGAGAGGTATTCATCGGACAATGATAAAGATGATGACACTTCCTCGCCATTTCTGAAGAGGAGGCGCAGAGATTTGACCAAGGATGCGAGATTGCTCTGCGATTTCTGCGGATTATCCAGCAGCCGCAGATACGACGAACTAAGGCCACACAAACAAGAACATGAAGCACTGTCTATGGAGAGCGAAGTCAAGAGATTACGGCTTTTGACCAGAATGACTGGTAAGGATCTCGACGGTTTGAGTTTCGAGGAGCTGCAAGTACTTAGAAACCGTCTAGATGATGTCTTGCCCATTGTGGAGAAGCATATGGACAAAATGAAGCTGGAAGAGGCTGCAAAGAAGAATGAAGCAGGGGTTGATAATGAAGGTACGAGGAGGAGAAGGGTTTTGGTTCCTTGCAGATTCTCTAACCGCGGCTCCGGAGAGGGACAACAGAAACAGGAGGATGGAGCACCACCAGTGTCGCGAAGGCAGAGAGAATTCGAGAAACGAAAAGCTGAACCTATGCACAGAGAATTGGAGAGATTATGGCTGTTGAAGGAGAGAATGAATGGCAGAGAGCTGACAAGTATGAGTTACATGGAGCTGAATATACTTTGGGATCAGATACACCACGGATTTCATGGTTTGCATGAGCATCTAAATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

DUF563

Protein Analysis

414

Amino Acids

48.76

Weight (kDa)

8.08

Isoelectric Point (pI)

64.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41440 AT2G41440 AT2G41440 AT2G41440 AT2G41445 AT2G41445 AT2G41445 AT2G41445 AT2G41470 AT2G41470 AT3G57230 AT3G57230 AT3G57230 AT3G57230 AT3G57230
fragaria_vesca	FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080
malus_domestica	MD08G1206400.v1.1 MD15G1389800.v1.1
prunus_persica	Prupe.1G538700_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1
rosa_laevigata	RLG00000001252
rosa_multiflora	Rmu_sc0000029.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227200
rosa_rugosa	Rorug07G0281200
rosa_samantha	Rh7AG437700 Rh7BG410400 Rh7CG457400
rosa_wichuraiana	Rw7G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	465
AccII	CGCG	3 cut(s)	552, 1008, 1060
AccIII	TCCGGA	1 cut(s)	1013
AciI	CCGC	5 cut(s)	70, 702, 718, 1006, 1008
AclWI	GGATC	2 cut(s)	828, 1203
AcsI	RAATTY	1 cut(s)	1073
AcuI	CTGAAG	1 cut(s)	668
AfaI	GTAC	3 cut(s)	265, 855, 964
AfeI	AGCGCT	1 cut(s)	327
AflII	CTTAAG	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	158, 1132
Alw21I	GWGCWC	2 cut(s)	435, 1048
AlwI	GGATC	2 cut(s)	828, 1203
Ama87I	CYCGRG	1 cut(s)	434
Aor13HI	TCCGGA	1 cut(s)	1013
Aor51HI	AGCGCT	1 cut(s)	327
AoxI	GGCC	1 cut(s)	737
ApeKI	GCWGC	9 cut(s)	67, 145, 328, 331, 539, 547, 714, 847, 926
ApoI	RAATTY	1 cut(s)	1073
AspLEI	GCGC	3 cut(s)	328, 552, 660
AspS9I	GGNCC	2 cut(s)	193, 283
AsuHPI	GGTGA	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	2 cut(s)	193, 283
BanII	GRGCYC	1 cut(s)	435
BauI	CACGAG	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	2 cut(s)	435, 1048
BbvI	GCAGC	9 cut(s)	54, 132, 315, 318, 526, 559, 726, 834, 913
BccI	CCATC	3 cut(s)	254, 314, 1034
BceAI	ACGGC	1 cut(s)	809
BclI	TGATCA	1 cut(s)	99
BfaI	CTAG	2 cut(s)	218, 869
BfoI	RGCGCY	1 cut(s)	329
BfrI	CTTAAG	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	465
BmcAI	AGTACT	1 cut(s)	855
Bme18I	GGWCC	2 cut(s)	193, 283
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	2 cut(s)	193, 283
BmiI	GGNNCC	4 cut(s)	46, 285, 987, 1012
BmsI	GCATC	3 cut(s)	118, 667, 1240
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	562
BsaJI	CCNNGG	4 cut(s)	521, 672, 1006, 1207
BsaWI	WCCGGW	1 cut(s)	1013
BsaXI	ACNNNNNCTCC	2 cut(s)	995, 1025
Bse1I	ACTGG	3 cut(s)	118, 817, 1052
Bse3DI	GCAATG	1 cut(s)	374
BseAI	TCCGGA	1 cut(s)	1013
BseDI	CCNNGG	4 cut(s)	521, 672, 1006, 1207
BseGI	GGATG	4 cut(s)	44, 178, 682, 1045
BseMI	GCAATG	1 cut(s)	374
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	3 cut(s)	118, 817, 1052
BseRI	GAGGAG	6 cut(s)	37, 283, 667, 857, 982, 985
BseXI	GCAGC	9 cut(s)	54, 132, 315, 318, 526, 559, 726, 834, 913
Bsh1236I	CGCG	3 cut(s)	552, 1008, 1060
BshFI	GGCC	1 cut(s)	739
BsiHKAI	GWGCWC	2 cut(s)	435, 1048
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	1014
BslFI	GGGAC	2 cut(s)	269, 1035
BsmFI	GGGAC	2 cut(s)	269, 1035
BsnI	GGCC	1 cut(s)	739
BsoBI	CYCGRG	1 cut(s)	434
Bsp1286I	GDGCHC	2 cut(s)	435, 1048
Bsp13I	TCCGGA	1 cut(s)	1013
Bsp143I	GATC	3 cut(s)	99, 820, 1195
Bsp68I	TCGCGA	1 cut(s)	1060
BspACI	CCGC	5 cut(s)	70, 702, 718, 1006, 1008
BspANI	GGCC	1 cut(s)	739
BspCNI	CTCAG	1 cut(s)	259
BspEI	TCCGGA	1 cut(s)	1013
BspFNI	CGCG	3 cut(s)	552, 1008, 1060
BspLI	GGNNCC	4 cut(s)	46, 285, 987, 1012
BspMI	ACCTGC	1 cut(s)	465
BspPI	GGATC	2 cut(s)	828, 1203
BspTI	CTTAAG	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	374
BsrI	ACTGG	3 cut(s)	118, 817, 1052
BssECI	CCNNGG	4 cut(s)	521, 672, 1006, 1207
BssMI	GATC	3 cut(s)	99, 820, 1195
BssSI	CACGAG	1 cut(s)	450
BssT1I	CCWWGG	2 cut(s)	521, 672
Bst2BI	CACGAG	1 cut(s)	450
Bst4CI	ACNGT	6 cut(s)	93, 187, 425, 765, 830, 866
Bst6I	CTCTTC	2 cut(s)	644, 915
BstAFI	CTTAAG	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	3 cut(s)	246, 734, 857
BstDSI	CCRYGG	2 cut(s)	1006, 1207
BstF5I	GGATG	4 cut(s)	44, 178, 682, 1045
BstFNI	CGCG	3 cut(s)	552, 1008, 1060
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	3 cut(s)	328, 552, 660
BstKTI	GATC	3 cut(s)	102, 823, 1198
BstMBI	GATC	3 cut(s)	99, 820, 1195
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 699
BstUI	CGCG	3 cut(s)	552, 1008, 1060
BstV1I	GCAGC	9 cut(s)	54, 132, 315, 318, 526, 559, 726, 834, 913
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	820
BsuRI	GGCC	1 cut(s)	739
BtgI	CCRYGG	2 cut(s)	1006, 1207
BtsCI	GGATG	4 cut(s)	44, 178, 682, 1045
BtsIMutI	CAGTG	3 cut(s)	183, 761, 1059
BtuMI	TCGCGA	1 cut(s)	1060
BveI	ACCTGC	1 cut(s)	465
Cac8I	GCNNGC	1 cut(s)	150
CfoI	GCGC	3 cut(s)	328, 552, 660
Cfr13I	GGNCC	2 cut(s)	193, 283
Cfr42I	CCGCGG	1 cut(s)	1009
Csp6I	GTAC	3 cut(s)	264, 854, 963
CviAII	CATG	5 cut(s)	288, 755, 1174, 1217, 1226
CviQI	GTAC	3 cut(s)	264, 854, 963
DdeI	CTNAG	3 cut(s)	246, 734, 857
DpnI	GATC	3 cut(s)	101, 822, 1197
DpnII	GATC	3 cut(s)	99, 820, 1195
Eam1104I	CTCTTC	2 cut(s)	644, 915
EarI	CTCTTC	2 cut(s)	644, 915
Ecl136II	GAGCTC	1 cut(s)	433
Eco130I	CCWWGG	2 cut(s)	521, 672
Eco24I	GRGCYC	1 cut(s)	435
Eco47I	GGWCC	2 cut(s)	193, 283
Eco47III	AGCGCT	1 cut(s)	327
Eco53kI	GAGCTC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	668
Eco88I	CYCGRG	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	1073
EcoT14I	CCWWGG	2 cut(s)	521, 672
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	2 cut(s)	521, 672
FaeI	CATG	5 cut(s)	291, 758, 1177, 1220, 1229
FaqI	GGGAC	2 cut(s)	269, 1035
FatI	CATG	5 cut(s)	287, 754, 1173, 1216, 1225
FauI	CCCGC	1 cut(s)	63
FauNDI	CATATG	1 cut(s)	900
FbaI	TGATCA	1 cut(s)	99
FokI	GGATG	4 cut(s)	51, 185, 689, 1052
FriOI	GRGCYC	1 cut(s)	435
FspBI	CTAG	2 cut(s)	218, 869
GlaI	GCGC	3 cut(s)	327, 551, 659
GsuI	CTGGAG	1 cut(s)	7
HaeII	RGCGCY	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	739
HapII	CCGG	1 cut(s)	1014
HhaI	GCGC	3 cut(s)	328, 552, 660
Hin1II	CATG	5 cut(s)	291, 758, 1177, 1220, 1229
Hin6I	GCGC	3 cut(s)	326, 550, 658
HinP1I	GCGC	3 cut(s)	326, 550, 658
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	4 cut(s)	351, 371, 569, 996
HpaI	GTTAAC	1 cut(s)	409
HpaII	CCGG	1 cut(s)	1014
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	8 cut(s)	52, 249, 301, 370, 477, 610, 648, 1200
Hpy188III	TCNNGA	9 cut(s)	103, 355, 452, 784, 824, 869, 1014, 1059, 1078
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	3 cut(s)	128, 731, 830
HpyAV	CCTTC	6 cut(s)	232, 337, 953, 969, 1056, 1126
HpyCH4III	ACNGT	6 cut(s)	93, 187, 425, 765, 830, 866
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 699
HpyF3I	CTNAG	3 cut(s)	246, 734, 857
Hsp92II	CATG	5 cut(s)	291, 758, 1177, 1220, 1229
HspAI	GCGC	3 cut(s)	326, 550, 658
Kpn2I	TCCGGA	1 cut(s)	1013
Ksp22I	TGATCA	1 cut(s)	99
KspAI	GTTAAC	1 cut(s)	409
KspI	CCGCGG	1 cut(s)	1009
Kzo9I	GATC	3 cut(s)	99, 820, 1195
LmnI	GCTCC	6 cut(s)	50, 323, 844, 1016, 1043, 1177
Lsp1109I	GCAGC	9 cut(s)	54, 132, 315, 318, 526, 559, 726, 834, 913
LweI	GCATC	3 cut(s)	118, 667, 1240
MaeI	CTAG	2 cut(s)	218, 869
MaeIII	GTNAC	2 cut(s)	452, 1169
MalI	GATC	3 cut(s)	101, 822, 1197
MboI	GATC	3 cut(s)	99, 820, 1195
MboII	GAAGA	9 cut(s)	217, 233, 236, 247, 372, 568, 661, 932, 946
MflI	RGATCY	1 cut(s)	820
MhlI	GDGCHC	2 cut(s)	435, 1048
MluCI	AATT	2 cut(s)	1073, 1109
MmeI	TCCRAC	1 cut(s)	171
MroI	TCCGGA	1 cut(s)	1013
MseI	TTAA	4 cut(s)	168, 338, 408, 482
MslI	CAYNNNNRTG	1 cut(s)	1236
MspA1I	CMGCKG	1 cut(s)	1008
MspCI	CTTAAG	1 cut(s)	167
MspI	CCGG	1 cut(s)	1014
MvnI	CGCG	3 cut(s)	552, 1008, 1060
MwoI	GCNNNNNNNGC	2 cut(s)	12, 699
NdeI	CATATG	1 cut(s)	900
NdeII	GATC	3 cut(s)	99, 820, 1195
NlaIII	CATG	5 cut(s)	291, 758, 1177, 1220, 1229
NlaIV	GGNNCC	4 cut(s)	46, 285, 987, 1012
NmuCI	GTSAC	1 cut(s)	452
NruI	TCGCGA	1 cut(s)	1060
PaeR7I	CTCGAG	1 cut(s)	434
PfeI	GAWTC	4 cut(s)	351, 371, 569, 996
Psp124BI	GAGCTC	1 cut(s)	435
PspN4I	GGNNCC	4 cut(s)	46, 285, 987, 1012
PspPI	GGNCC	2 cut(s)	193, 283
PspXI	VCTCGAGB	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	820
RruI	TCGCGA	1 cut(s)	1060
RsaI	GTAC	3 cut(s)	265, 855, 964
RsaNI	GTAC	3 cut(s)	264, 854, 963
RseI	CAYNNNNRTG	1 cut(s)	1236
SacI	GAGCTC	1 cut(s)	435
SacII	CCGCGG	1 cut(s)	1009
SaqAI	TTAA	4 cut(s)	168, 338, 408, 482
Sau3AI	GATC	3 cut(s)	99, 820, 1195
Sau96I	GGNCC	2 cut(s)	193, 283
ScaI	AGTACT	1 cut(s)	855
SduI	GDGCHC	2 cut(s)	435, 1048
SfaNI	GCATC	3 cut(s)	118, 667, 1240
Sfr274I	CTCGAG	1 cut(s)	434
Sfr303I	CCGCGG	1 cut(s)	1009
SgrBI	CCGCGG	1 cut(s)	1009
SinI	GGWCC	2 cut(s)	193, 283
SlaI	CTCGAG	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	1236
SmlI	CTYRAG	3 cut(s)	167, 434, 577
SmoI	CTYRAG	3 cut(s)	167, 434, 577
Sse9I	AATT	2 cut(s)	1073, 1109
SsiI	CCGC	5 cut(s)	70, 702, 718, 1006, 1008
SspMI	CTAG	2 cut(s)	218, 869
SstI	GAGCTC	1 cut(s)	435
StyI	CCWWGG	2 cut(s)	521, 672
TaaI	ACNGT	6 cut(s)	93, 187, 425, 765, 830, 866
TaqI	TCGA	5 cut(s)	354, 435, 825, 840, 1077
TasI	AATT	2 cut(s)	1073, 1109
TatI	WGTACW	1 cut(s)	853
TauI	GCSGC	2 cut(s)	720, 1011
TfiI	GAWTC	4 cut(s)	351, 371, 569, 996
Tru1I	TTAA	4 cut(s)	168, 338, 408, 482
Tru9I	TTAA	4 cut(s)	168, 338, 408, 482
TscAI	CASTG	3 cut(s)	190, 768, 1059
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	9 cut(s)	67, 145, 328, 331, 539, 547, 714, 847, 926
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	9 cut(s)	434, 527, 594, 771, 926, 954, 972, 1157, 1205
TspGWI	ACGGA	1 cut(s)	1224
TspRI	CASTG	3 cut(s)	190, 768, 1059
Vha464I	CTTAAG	1 cut(s)	167
VpaK11BI	GGWCC	2 cut(s)	193, 283
XapI	RAATTY	1 cut(s)	1073
XbaI	TCTAGA	1 cut(s)	868
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1214
XhoI	CTCGAG	1 cut(s)	434
XspI	CTAG	2 cut(s)	218, 869
ZrmI	AGTACT	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.