Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003290

Physical Location & Seq

Genomic Coordinates Forward (+)

26769431 .. 26788752

Gene Structure 19322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1206400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGATCTTCTCCAGCACCGGCAAGCTCTATGATTTTGCAAGCACCAGCATGAAATCAGTAATTGAACGATACAACAAAGCTAAAGAGGAGCACCATCAATTTGGGAATCCAGCTTCTGAGATTAAGTTATGGCAAAGGGAAGCAGCAATGTTGAGGCAACAACTTCAAAACTTGCAAGAAAACCATAGGCAAATGATGGGAGAAGAGCTTTCTGGTCTGAGTGTGAAAGATTTACAGAATCTGGAGAACCAATTGGAAACAAGTCTTCGGGCTGTCCGAATGAAAAAGGACCAACTTTTAATGGATGAAATAGAAGAACTAAACCGAAAGGGGAACCTCATTCACCAAGAAAATGTCCATCTGTTTAAGAAAGTAAACCTAATTCGTGAAGAAAATGCGGAGTTATCTAAGAAGGTTAATGAAACAATGGATGTAAATGAAGCCAACCGAAGTCTCATTCTGACAAATGGTCAAGGTATTGAAGAGGACTCACATGGACCTGTCCGTCTCCAGCTTAGCCAGCCACAGCAGCAAAACTACGAGCCAGTAGCAAGGGCTACAAATCTGGGACTACAACTACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

195

Amino Acids

22.45

Weight (kDa)

6.1

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	39 - 125	1.7e-28	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41440 AT2G41440 AT2G41440 AT2G41440 AT2G41445 AT2G41445 AT2G41445 AT2G41445 AT2G41470 AT2G41470 AT3G57230 AT3G57230 AT3G57230 AT3G57230 AT3G57230
fragaria_vesca	FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080
malus_domestica	MD08G1206400.v1.1 MD15G1389800.v1.1
prunus_persica	Prupe.1G538700_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1
rosa_laevigata	RLG00000001252
rosa_multiflora	Rmu_sc0000029.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227200
rosa_rugosa	Rorug07G0281200
rosa_samantha	Rh7AG437700 Rh7BG410400 Rh7CG457400
rosa_wichuraiana	Rw7G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	504
AciI	CCGC	1 cut(s)	398
AgsI	TTSAA	3 cut(s)	65, 167, 482
AhdI	GACNNNNNGTC	1 cut(s)	468
AluBI	AGCT	5 cut(s)	25, 80, 113, 208, 514
AluI	AGCT	5 cut(s)	25, 80, 113, 208, 514
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	2 cut(s)	458, 512
AlwNI	CAGNNNCTG	2 cut(s)	116, 241
ApeKI	GCWGC	2 cut(s)	143, 529
AspS9I	GGNCC	2 cut(s)	289, 497
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	2 cut(s)	289, 497
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	155, 541
BccI	CCATC	3 cut(s)	102, 190, 366
BcoDI	GTCTC	2 cut(s)	458, 512
BfaI	CTAG	1 cut(s)	583
BisI	GCNGC	2 cut(s)	144, 530
BlpI	GCTNAGC	1 cut(s)	515
BlsI	GCNGC	2 cut(s)	145, 531
Bme18I	GGWCC	2 cut(s)	289, 497
BmeRI	GACNNNNNGTC	1 cut(s)	468
BmgT120I	GGNCC	2 cut(s)	289, 497
BmiI	GGNNCC	1 cut(s)	335
BpiI	GAAGAC	1 cut(s)	257
BpmI	CTGGAG	2 cut(s)	263, 494
Bpu1102I	GCTNAGC	1 cut(s)	515
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	545
Bse3DI	GCAATG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	310, 436
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	108, 209
BseNI	ACTGG	1 cut(s)	545
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	155, 541
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	18
BsmAI	GTCTC	2 cut(s)	458, 512
BsmBI	CGTCTC	1 cut(s)	512
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	3
Bsp1720I	GCTNAGC	1 cut(s)	515
BspACI	CCGC	1 cut(s)	398
BspCNI	CTCAG	2 cut(s)	109, 210
BspLI	GGNNCC	1 cut(s)	335
BspQI	GCTCTTC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	545
BssAI	RCCGGY	1 cut(s)	17
BssMI	GATC	1 cut(s)	3
Bst6I	CTCTTC	2 cut(s)	198, 477
BstC8I	GCNNGC	3 cut(s)	23, 40, 521
BstDEI	CTNAG	4 cut(s)	117, 218, 408, 515
BstF5I	GGATG	2 cut(s)	310, 436
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	458, 512
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	520, 529
BstV1I	GCAGC	2 cut(s)	155, 541
BstV2I	GAAGAC	1 cut(s)	257
BstXI	CCANNNNNNTGG	1 cut(s)	101
BtsCI	GGATG	2 cut(s)	310, 436
Cac8I	GCNNGC	3 cut(s)	23, 40, 521
CaiI	CAGNNNCTG	2 cut(s)	116, 241
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	289, 497
CviAII	CATG	2 cut(s)	49, 494
DdeI	CTNAG	4 cut(s)	117, 218, 408, 515
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DrdI	GACNNNNNNGTC	1 cut(s)	504
DriI	GACNNNNNGTC	1 cut(s)	468
DseDI	GACNNNNNNGTC	1 cut(s)	504
Eam1104I	CTCTTC	2 cut(s)	198, 477
Eam1105I	GACNNNNNGTC	1 cut(s)	468
EarI	CTCTTC	2 cut(s)	198, 477
Eco47I	GGWCC	2 cut(s)	289, 497
Esp3I	CGTCTC	1 cut(s)	512
FaeI	CATG	2 cut(s)	52, 497
FaiI	YATR	5 cut(s)	30, 50, 130, 186, 495
FatI	CATG	2 cut(s)	48, 493
Fnu4HI	GCNGC	2 cut(s)	144, 530
FokI	GGATG	2 cut(s)	317, 443
Fsp4HI	GCNGC	2 cut(s)	144, 530
FspBI	CTAG	1 cut(s)	583
GluI	GCNGC	2 cut(s)	144, 530
GsuI	CTGGAG	2 cut(s)	263, 494
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	2 cut(s)	52, 497
HinfI	GANTC	3 cut(s)	106, 238, 488
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	4 cut(s)	118, 219, 278, 462
Hpy188III	TCNNGA	2 cut(s)	242, 386
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	1 cut(s)	406
HpyCH4V	TGCA	2 cut(s)	38, 175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	520, 529
HpyF3I	CTNAG	4 cut(s)	117, 218, 408, 515
Hsp92II	CATG	2 cut(s)	52, 497
Kzo9I	GATC	1 cut(s)	3
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	2 cut(s)	155, 541
MaeI	CTAG	1 cut(s)	583
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	5 cut(s)	215, 257, 326, 401, 494
MfeI	CAATTG	1 cut(s)	251
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	4 cut(s)	60, 98, 251, 381
MlyI	GAGTC	1 cut(s)	482
MnlI	CCTC	4 cut(s)	79, 147, 347, 478
MseI	TTAA	4 cut(s)	123, 299, 366, 417
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	251
MwoI	GCNNNNNNNGC	2 cut(s)	520, 529
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	52, 497
NlaIV	GGNNCC	1 cut(s)	335
PciSI	GCTCTTC	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	106, 238
PkrI	GCNGC	2 cut(s)	145, 531
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
PspN4I	GGNNCC	1 cut(s)	335
PspPI	GGNCC	2 cut(s)	289, 497
PstNI	CAGNNNCTG	2 cut(s)	116, 241
RseI	CAYNNNNRTG	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	4 cut(s)	123, 299, 366, 417
SatI	GCNGC	2 cut(s)	144, 530
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	2 cut(s)	289, 497
SchI	GAGTC	1 cut(s)	482
SduI	GDGCHC	1 cut(s)	93
SinI	GGWCC	2 cut(s)	289, 497
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	4 cut(s)	60, 98, 251, 381
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	1 cut(s)	583
TasI	AATT	4 cut(s)	60, 98, 251, 381
TfiI	GAWTC	2 cut(s)	106, 238
Tru1I	TTAA	4 cut(s)	123, 299, 366, 417
Tru9I	TTAA	4 cut(s)	123, 299, 366, 417
TseI	GCWGC	2 cut(s)	143, 529
TspDTI	ATGAA	5 cut(s)	65, 296, 321, 435, 453
TspGWI	ACGGA	1 cut(s)	494
VpaK11BI	GGWCC	2 cut(s)	289, 497
XspI	CTAG	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.