Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003290

Physical Location & Seq

Genomic Coordinates Forward (+)

48357721 .. 48379050

Gene Structure 21330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1389800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGGGAGGGGTAAGATTGTGATAAGGAGGATCGACAATTCGACCAGCAGGCAAGTGACGTTTTCAAAGCGGAGGAGCGGGCTGTTGAAGAAGGCAAAGGAGCTGGCGATCTTGTGCGATGCTGAGGTTGGAGTCATGATCTTCTCCAGCACTGGCAAGCTCTACGATTTTGCAAGCACCAGCATAAAATCAGTAATCGAACGATACAACAGAGCAAAAGAGGAGCACTACCAATTTGGGAATCCAGCTTCTGAGGTTAAGATATGGCAAAGGGAAGCAGCAACGTTGAGGCAACAACTTCAAAACTTGCAAGCAAGCCATAGGCAAATGATGGGAGAAGAGCTTTCTGGTCTAAATGTGAAAGACTTACAGAATCTAGAGAACCAATTGGAAATGAGTCTTCGGAGTGTCCGAATAAAAAAGGGGAACCTCATTCACCAAGAAAATATAGAACTGTATAAGAAGGTAAACCTAATTCGTCAAGAAAACATGGAGTTATCTAAGAAGGTTTATGGAACAAGGAATGTAAACGAAGCAAATCGAAACACTCTTCTGACAAATGGTCAAGGTATTGAAGAGGACTCAAATGGACCTGTCCGTCTCCAGCTTAGCCAGCCACAGCAGCAAAGCTACGAGCCACCAGCAAGGGCAACAAATCTGGGCAGACTACAATTACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008134 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010374 GO:0010440 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

227

Amino Acids

25.85

Weight (kDa)

9.84

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	5e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	84 - 170	1.7e-25	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41440 AT2G41440 AT2G41440 AT2G41440 AT2G41445 AT2G41445 AT2G41445 AT2G41445 AT2G41470 AT2G41470 AT3G57230 AT3G57230 AT3G57230 AT3G57230 AT3G57230
fragaria_vesca	FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080 FvH4_5g34080
malus_domestica	MD08G1206400.v1.1 MD15G1389800.v1.1
prunus_persica	Prupe.1G538700_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1 Prupe.1G538800_v2.0.a1
rosa_laevigata	RLG00000001252
rosa_multiflora	Rmu_sc0000029.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227200
rosa_rugosa	Rorug07G0281200
rosa_samantha	Rh7AG437700 Rh7BG410400 Rh7CG457400
rosa_wichuraiana	Rw7G036090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	597
AccBSI	CCGCTC	1 cut(s)	78
AciI	CCGC	2 cut(s)	70, 78
AclI	AACGTT	1 cut(s)	284
AclWI	GGATC	1 cut(s)	38
AgsI	TTSAA	4 cut(s)	66, 88, 302, 575
AhdI	GACNNNNNGTC	1 cut(s)	561
AluBI	AGCT	6 cut(s)	103, 160, 248, 343, 607, 630
AluI	AGCT	6 cut(s)	103, 160, 248, 343, 607, 630
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	605
AlwI	GGATC	1 cut(s)	38
AlwNI	CAGNNNCTG	1 cut(s)	251
ApeKI	GCWGC	2 cut(s)	278, 622
AspS9I	GGNCC	1 cut(s)	590
AsuHPI	GGTGA	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	228
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	290, 634
BccI	CCATC	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	605
BfaI	CTAG	2 cut(s)	377, 679
BisI	GCNGC	2 cut(s)	279, 623
BlpI	GCTNAGC	1 cut(s)	608
BlsI	GCNGC	2 cut(s)	280, 624
Bme18I	GGWCC	1 cut(s)	590
BmeRI	GACNNNNNGTC	1 cut(s)	561
BmgT120I	GGNCC	1 cut(s)	590
BmiI	GGNNCC	1 cut(s)	428
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	392
BpmI	CTGGAG	2 cut(s)	130, 587
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	608
Bse1I	ACTGG	1 cut(s)	157
BseMII	CTCAG	2 cut(s)	114, 243
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	88, 236
BseXI	GCAGC	2 cut(s)	290, 634
BsiHKAI	GWGCWC	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	605
BsmBI	CGTCTC	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	30, 108, 138
Bsp1720I	GCTNAGC	1 cut(s)	608
BspACI	CCGC	2 cut(s)	70, 78
BspCNI	CTCAG	2 cut(s)	115, 244
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	428
BspPI	GGATC	1 cut(s)	38
BspQI	GCTCTTC	1 cut(s)	333
BsrBI	CCGCTC	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	157
BssMI	GATC	3 cut(s)	30, 108, 138
Bst4CI	ACNGT	1 cut(s)	456
Bst6I	CTCTTC	3 cut(s)	333, 555, 570
BstC8I	GCNNGC	8 cut(s)	50, 80, 105, 158, 175, 312, 316, 614
BstDEI	CTNAG	4 cut(s)	123, 252, 501, 608
BstKTI	GATC	3 cut(s)	33, 111, 141
BstMAI	GTCTC	1 cut(s)	605
BstMBI	GATC	3 cut(s)	30, 108, 138
BstMWI	GCNNNNNNNGC	2 cut(s)	613, 622
BstV1I	GCAGC	2 cut(s)	290, 634
BstV2I	GAAGAC	1 cut(s)	392
BtgZI	GCGATG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	8 cut(s)	50, 80, 105, 158, 175, 312, 316, 614
CaiI	CAGNNNCTG	1 cut(s)	251
CciI	TCATGA	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	590
CviAII	CATG	2 cut(s)	136, 490
DdeI	CTNAG	4 cut(s)	123, 252, 501, 608
DpnI	GATC	3 cut(s)	32, 110, 140
DpnII	GATC	3 cut(s)	30, 108, 138
DrdI	GACNNNNNNGTC	1 cut(s)	597
DriI	GACNNNNNGTC	1 cut(s)	561
DseDI	GACNNNNNNGTC	1 cut(s)	597
Eam1104I	CTCTTC	3 cut(s)	333, 555, 570
Eam1105I	GACNNNNNGTC	1 cut(s)	561
EarI	CTCTTC	3 cut(s)	333, 555, 570
Eco47I	GGWCC	1 cut(s)	590
Esp3I	CGTCTC	1 cut(s)	605
FaeI	CATG	2 cut(s)	139, 493
FaiI	YATR	8 cut(s)	137, 185, 265, 321, 449, 459, 491, 513
FatI	CATG	2 cut(s)	135, 489
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	2 cut(s)	279, 623
Fsp4HI	GCNGC	2 cut(s)	279, 623
FspBI	CTAG	2 cut(s)	377, 679
GluI	GCNGC	2 cut(s)	279, 623
GsuI	CTGGAG	2 cut(s)	130, 587
Hin1II	CATG	2 cut(s)	139, 493
HinfI	GANTC	5 cut(s)	132, 241, 373, 397, 581
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	2 cut(s)	469, 529
Hpy188I	TCNGA	4 cut(s)	253, 405, 413, 555
Hpy188III	TCNNGA	3 cut(s)	136, 377, 482
Hpy8I	GTNNAC	2 cut(s)	469, 529
HpyAV	CCTTC	3 cut(s)	85, 457, 499
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4IV	ACGT	2 cut(s)	59, 284
HpyCH4V	TGCA	2 cut(s)	173, 310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	613, 622
HpyF3I	CTNAG	4 cut(s)	123, 252, 501, 608
HpySE526I	ACGT	2 cut(s)	59, 284
Hsp92II	CATG	2 cut(s)	139, 493
Kzo9I	GATC	3 cut(s)	30, 108, 138
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	3 cut(s)	75, 100, 223
Lsp1109I	GCAGC	2 cut(s)	290, 634
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	2 cut(s)	377, 679
MaeII	ACGT	2 cut(s)	59, 284
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	32, 110, 140
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	3 cut(s)	30, 108, 138
MboII	GAAGA	6 cut(s)	100, 133, 350, 392, 542, 587
MfeI	CAATTG	1 cut(s)	386
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	5 cut(s)	37, 233, 386, 474, 671
MlyI	GAGTC	3 cut(s)	141, 406, 575
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	8 cut(s)	21, 66, 118, 214, 247, 282, 440, 571
MseI	TTAA	1 cut(s)	258
MunI	CAATTG	1 cut(s)	386
MwoI	GCNNNNNNNGC	2 cut(s)	613, 622
NdeII	GATC	3 cut(s)	30, 108, 138
NlaIII	CATG	2 cut(s)	139, 493
NlaIV	GGNNCC	1 cut(s)	428
NmuCI	GTSAC	1 cut(s)	55
PagI	TCATGA	1 cut(s)	135
PciSI	GCTCTTC	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	241, 373
PkrI	GCNGC	2 cut(s)	280, 624
PleI	GAGTC	3 cut(s)	140, 405, 575
PpsI	GAGTC	3 cut(s)	140, 405, 575
Psp1406I	AACGTT	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	428
PspPI	GGNCC	1 cut(s)	590
PstNI	CAGNNNCTG	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	279, 623
Sau3AI	GATC	3 cut(s)	30, 108, 138
Sau96I	GGNCC	1 cut(s)	590
SchI	GAGTC	3 cut(s)	141, 406, 575
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	590
Sse9I	AATT	5 cut(s)	37, 233, 386, 474, 671
SsiI	CCGC	2 cut(s)	70, 78
SspMI	CTAG	2 cut(s)	377, 679
TaaI	ACNGT	1 cut(s)	456
TaiI	ACGT	2 cut(s)	62, 287
TaqI	TCGA	4 cut(s)	33, 41, 198, 541
TasI	AATT	5 cut(s)	37, 233, 386, 474, 671
TfiI	GAWTC	2 cut(s)	241, 373
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	278, 622
Tsp45I	GTSAC	1 cut(s)	55
TspGWI	ACGGA	1 cut(s)	587
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	590
XbaI	TCTAGA	1 cut(s)	376
XspI	CTAG	2 cut(s)	377, 679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.