AT2G42380
BZIP Family

bZIP transcription factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006664
Physical Location & Seq
Reverse (-)
17646857 .. 17649062
2206 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42380.1

Sequence Viewer

Length: 933 bp
ATGGCACAACTCCCTCCTAAAATCCCCAACATGACACAACATTGGCCTGATTTCTCTTCCCAAAAGCTCTCTCCTTTCTCTACCCCAACCGCAACCGCTGTCGCCACCGCTACAACCACCGTACAAAACCCCTCATGGGTCGACGAATTCCTCGACTTCTCAGCGTCTCGCCGTGGCAACCACCGTCGTTCCATCAGCGACTCTATCGCATTCCTCGAAGCTCCAACAGTCAGCATCGAAGACCACCAATTCGACAGGTTCGATGACGAACAGTTCATGTCGATGTTCACCGACGACGACAACCTTCATAGCAATCCTTCCCATATCAACAACAAAAATAACAATGTGGGGCCCACGGGATCTTCCTCGAACACATCCACGCCGTCCAATAGCTTCAACGACGATAACAAAGAATTACCACCGTCCGATCATAACATGAACAATAATATCAACAACAACTATAACGATGAAGTCCAAAGCCAATGCAAGATGGAGCCAGAAGATGGTACGGCGTCGAATAACAATTCCGGTGATAGCTCCGGCAACCGGATTCTCGATCCCAAAAGGGTTAAGAGAATATTAGCAAATCGGCAATCAGCACAGAGATCAAGGGTGAGGAAACTGCAATACATATCAGAGCTCGAACTGTTATCGCCAAGAGTTGCATTCTTGGATCATCAACGTTTGCTTCTTAACGTTGACAACAGCGCTCTCAAGCAACGAATCGCTGCTTTATCTCAAGACAAGCTTTTCAAAGACGCACATCAAGAAGCATTGAAGAGAGAAATAGAGAGACTTCGACAAGTGTATAATCAACAAAGCCTCACGAATGTGGAAAATGCAAATCATTTATCGGCGACCGGAGCCGGTGCTACTCCGGCCGTCGACATCAAGTCGTCCGTTGAAACAGAGCAGCTCCTCAATGTCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009555 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0045893 GO:0045935 GO:0046907 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

310

Amino Acids

34.66

Weight (kDa)

5.6

Isoelectric Point (pI)

53.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 188 - 247 3.3e-07 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 503
AccI GTMKAC 2 cut(s) 141, 885
AciI CCGC 3 cut(s) 90, 96, 108
AclI AACGTT 2 cut(s) 682, 696
AclWI GGATC 3 cut(s) 367, 551, 681
AcoI YGGCCR 1 cut(s) 879
AcsI RAATTY 1 cut(s) 146
AcyI GRCGYC 1 cut(s) 512
AfaI GTAC 2 cut(s) 123, 508
AfeI AGCGCT 1 cut(s) 709
AfiI CCNNNNNNNGG 3 cut(s) 136, 503, 546
AgsI TTSAA 4 cut(s) 397, 754, 778, 905
AhdI GACNNNNNGTC 1 cut(s) 892
AleI CACNNNNGTG 1 cut(s) 830
AluBI AGCT 7 cut(s) 67, 221, 393, 537, 640, 748, 916
AluI AGCT 7 cut(s) 67, 221, 393, 537, 640, 748, 916
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 2 cut(s) 171, 787
AlwI GGATC 3 cut(s) 367, 551, 681
Aor51HI AGCGCT 1 cut(s) 709
AoxI GGCC 3 cut(s) 44, 350, 879
ApaI GGGCCC 1 cut(s) 354
ApeKI GCWGC 2 cut(s) 728, 913
ApoI RAATTY 1 cut(s) 146
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AspLEI GCGC 1 cut(s) 710
AspS9I GGNCC 2 cut(s) 350, 351
AsuHPI GGTGA 3 cut(s) 280, 542, 625
BaeGI GKGCMC 1 cut(s) 354
BanII GRGCYC 2 cut(s) 354, 642
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 642
BbvI GCAGC 2 cut(s) 715, 925
BccI CCATC 3 cut(s) 200, 484, 497
BceAI ACGGC 4 cut(s) 156, 367, 525, 866
BcoDI GTCTC 2 cut(s) 171, 787
BfoI RGCGCY 1 cut(s) 711
BisI GCNGC 2 cut(s) 729, 914
BlsI GCNGC 2 cut(s) 730, 915
BmeRI GACNNNNNGTC 1 cut(s) 892
BmgT120I GGNCC 2 cut(s) 350, 351
BmiI GGNNCC 4 cut(s) 351, 352, 495, 865
BmsI GCATC 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 246
BpuEI CTTGAG 2 cut(s) 698, 723
BsaHI GRCGYC 1 cut(s) 512
BsaJI CCNNGG 2 cut(s) 172, 354
BsaWI WCCGGW 3 cut(s) 527, 546, 860
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 503, 546
Bse118I RCCGGY 1 cut(s) 866
BseDI CCNNGG 2 cut(s) 172, 354
BseGI GGATG 1 cut(s) 374
BseLI CCNNNNNNNGG 3 cut(s) 136, 503, 546
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 908
BseSI GKGCMC 1 cut(s) 354
BseX3I CGGCCG 1 cut(s) 879
BseXI GCAGC 2 cut(s) 715, 925
Bsh1285I CGRYCG 2 cut(s) 861, 882
BshFI GGCC 3 cut(s) 46, 352, 881
BsiEI CGRYCG 2 cut(s) 861, 882
BsiHKAI GWGCWC 1 cut(s) 642
BsiSI CCGG 6 cut(s) 528, 540, 547, 861, 867, 878
BslI CCNNNNNNNGG 3 cut(s) 136, 503, 546
BsmAI GTCTC 2 cut(s) 171, 787
BsmBI CGTCTC 1 cut(s) 171
BsmI GAATGC 2 cut(s) 209, 665
BsnI GGCC 3 cut(s) 46, 352, 881
Bsp120I GGGCCC 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 354, 642
Bsp143I GATC 5 cut(s) 359, 427, 556, 605, 673
BspACI CCGC 3 cut(s) 90, 96, 108
BspANI GGCC 3 cut(s) 46, 352, 881
BspCNI CTCAG 1 cut(s) 173
BspLI GGNNCC 4 cut(s) 351, 352, 495, 865
BspPI GGATC 3 cut(s) 367, 551, 681
BsrFI RCCGGY 1 cut(s) 866
BssAI RCCGGY 1 cut(s) 866
BssECI CCNNGG 2 cut(s) 172, 354
BssMI GATC 5 cut(s) 359, 427, 556, 605, 673
BssNI GRCGYC 1 cut(s) 512
Bst4CI ACNGT 6 cut(s) 121, 185, 229, 273, 423, 648
Bst6I CTCTTC 2 cut(s) 61, 773
BstACI GRCGYC 1 cut(s) 512
BstDEI CTNAG 1 cut(s) 160
BstDSI CCRYGG 2 cut(s) 172, 354
BstF5I GGATG 1 cut(s) 374
BstH2I RGCGCY 1 cut(s) 711
BstHHI GCGC 1 cut(s) 710
BstKTI GATC 5 cut(s) 362, 430, 559, 608, 676
BstMAI GTCTC 2 cut(s) 171, 787
BstMBI GATC 5 cut(s) 359, 427, 556, 605, 673
BstMCI CGRYCG 2 cut(s) 861, 882
BstMWI GCNNNNNNNGC 2 cut(s) 863, 878
BstSLI GKGCMC 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 715, 925
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BstZI CGGCCG 1 cut(s) 879
BsuRI GGCC 3 cut(s) 46, 352, 881
BtgI CCRYGG 2 cut(s) 172, 354
BtsCI GGATG 1 cut(s) 374
CfoI GCGC 1 cut(s) 710
Cfr10I RCCGGY 1 cut(s) 866
Cfr13I GGNCC 2 cut(s) 350, 351
CseI GACGC 3 cut(s) 153, 501, 767
Csp6I GTAC 2 cut(s) 122, 507
CviAII CATG 4 cut(s) 31, 135, 277, 436
CviQI GTAC 2 cut(s) 122, 507
DdeI CTNAG 1 cut(s) 160
DpnI GATC 5 cut(s) 361, 429, 558, 607, 675
DpnII GATC 5 cut(s) 359, 427, 556, 605, 673
DriI GACNNNNNGTC 1 cut(s) 892
EaeI YGGCCR 1 cut(s) 879
EagI CGGCCG 1 cut(s) 879
Eam1104I CTCTTC 2 cut(s) 61, 773
Eam1105I GACNNNNNGTC 1 cut(s) 892
EarI CTCTTC 2 cut(s) 61, 773
Ecl136II GAGCTC 1 cut(s) 640
EclXI CGGCCG 1 cut(s) 879
Eco24I GRGCYC 2 cut(s) 354, 642
Eco47III AGCGCT 1 cut(s) 709
Eco52I CGGCCG 1 cut(s) 879
Eco53kI GAGCTC 1 cut(s) 640
EcoICRI GAGCTC 1 cut(s) 640
EcoO109I RGGNCCY 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 146
EcoT38I GRGCYC 2 cut(s) 354, 642
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 4 cut(s) 34, 138, 280, 439
FalI AAGNNNNNCTT 2 cut(s) 732, 764
FatI CATG 4 cut(s) 30, 134, 276, 435
FblI GTMKAC 2 cut(s) 141, 885
Fnu4HI GCNGC 2 cut(s) 729, 914
FokI GGATG 1 cut(s) 361
FriOI GRGCYC 2 cut(s) 354, 642
Fsp4HI GCNGC 2 cut(s) 729, 914
GlaI GCGC 1 cut(s) 709
GluI GCNGC 2 cut(s) 729, 914
HaeII RGCGCY 1 cut(s) 711
HaeIII GGCC 3 cut(s) 46, 352, 881
HapII CCGG 6 cut(s) 528, 540, 547, 861, 867, 878
HgaI GACGC 3 cut(s) 153, 501, 767
HhaI GCGC 1 cut(s) 710
Hin1I GRCGYC 1 cut(s) 512
Hin1II CATG 4 cut(s) 34, 138, 280, 439
Hin6I GCGC 1 cut(s) 708
HinP1I GCGC 1 cut(s) 708
HincII GTYRAC 3 cut(s) 142, 700, 886
HindII GTYRAC 3 cut(s) 142, 700, 886
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 3 cut(s) 200, 550, 723
HpaII CCGG 6 cut(s) 528, 540, 547, 861, 867, 878
HphI GGTGA 3 cut(s) 280, 542, 625
Hpy166II GTNNAC 4 cut(s) 142, 288, 700, 886
Hpy188I TCNGA 2 cut(s) 427, 637
Hpy188III TCNNGA 4 cut(s) 554, 740, 767, 826
Hpy8I GTNNAC 4 cut(s) 142, 288, 700, 886
Hpy99I CGWCG 7 cut(s) 146, 189, 296, 299, 404, 517, 887
HpyAV CCTTC 2 cut(s) 314, 327
HpyCH4III ACNGT 6 cut(s) 121, 185, 229, 273, 423, 648
HpyCH4IV ACGT 2 cut(s) 682, 696
HpyCH4V TGCA 4 cut(s) 486, 625, 665, 842
HpyF10VI GCNNNNNNNGC 2 cut(s) 863, 878
HpyF3I CTNAG 1 cut(s) 160
HpySE526I ACGT 2 cut(s) 682, 696
Hsp92I GRCGYC 1 cut(s) 512
Hsp92II CATG 4 cut(s) 34, 138, 280, 439
HspAI GCGC 1 cut(s) 708
Kzo9I GATC 5 cut(s) 359, 427, 556, 605, 673
LmnI GCTCC 5 cut(s) 226, 493, 542, 863, 921
LpnPI CCDG 9 cut(s) 60, 241, 510, 541, 553, 560, 874, 880, 891
Lsp1109I GCAGC 2 cut(s) 715, 925
LweI GCATC 1 cut(s) 243
MaeII ACGT 2 cut(s) 682, 696
MalI GATC 5 cut(s) 361, 429, 558, 607, 675
MboI GATC 5 cut(s) 359, 427, 556, 605, 673
MboII GAAGA 5 cut(s) 48, 251, 354, 512, 790
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 2 cut(s) 354, 642
MluCI AATT 4 cut(s) 146, 248, 413, 523
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 8 cut(s) 24, 142, 161, 224, 376, 609, 833, 929
MseI TTAA 2 cut(s) 570, 693
MslI CAYNNNNRTG 2 cut(s) 281, 830
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 6 cut(s) 528, 540, 547, 861, 867, 878
Mva1269I GAATGC 2 cut(s) 209, 665
MwoI GCNNNNNNNGC 2 cut(s) 863, 878
NdeII GATC 5 cut(s) 359, 427, 556, 605, 673
NlaIII CATG 4 cut(s) 34, 138, 280, 439
NlaIV GGNNCC 4 cut(s) 351, 352, 495, 865
OliI CACNNNNGTG 1 cut(s) 830
PcsI WCGNNNNNNNCGW 3 cut(s) 150, 213, 258
PctI GAATGC 2 cut(s) 209, 665
PfeI GAWTC 2 cut(s) 550, 723
PflMI CCANNNNNTGG 1 cut(s) 503
PkrI GCNGC 2 cut(s) 730, 915
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp124BI GAGCTC 1 cut(s) 642
Psp1406I AACGTT 2 cut(s) 682, 696
PspN4I GGNNCC 4 cut(s) 351, 352, 495, 865
PspOMI GGGCCC 1 cut(s) 350
PspPI GGNCC 2 cut(s) 350, 351
PsuI RGATCY 1 cut(s) 359
RsaI GTAC 2 cut(s) 123, 508
RsaNI GTAC 2 cut(s) 122, 507
RseI CAYNNNNRTG 2 cut(s) 281, 830
SacI GAGCTC 1 cut(s) 642
SalI GTCGAC 2 cut(s) 140, 884
SaqAI TTAA 2 cut(s) 570, 693
SatI GCNGC 2 cut(s) 729, 914
Sau3AI GATC 5 cut(s) 359, 427, 556, 605, 673
Sau96I GGNCC 2 cut(s) 350, 351
SchI GAGTC 1 cut(s) 194
SduI GDGCHC 2 cut(s) 354, 642
SfaNI GCATC 1 cut(s) 243
SmiMI CAYNNNNRTG 2 cut(s) 281, 830
SmlI CTYRAG 2 cut(s) 713, 738
SmoI CTYRAG 2 cut(s) 713, 738
Sse9I AATT 4 cut(s) 146, 248, 413, 523
SsiI CCGC 3 cut(s) 90, 96, 108
SspI AATATT 1 cut(s) 579
SstI GAGCTC 1 cut(s) 642
TaaI ACNGT 6 cut(s) 121, 185, 229, 273, 423, 648
TaiI ACGT 2 cut(s) 685, 699
TasI AATT 4 cut(s) 146, 248, 413, 523
TfiI GAWTC 2 cut(s) 550, 723
Tru1I TTAA 2 cut(s) 570, 693
Tru9I TTAA 2 cut(s) 570, 693
TseI GCWGC 2 cut(s) 728, 913
TspDTI ATGAA 4 cut(s) 265, 296, 452, 483
TspGWI ACGGA 1 cut(s) 889
Van91I CCANNNNNTGG 1 cut(s) 503
XapI RAATTY 1 cut(s) 146
XmiI GTMKAC 2 cut(s) 141, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.