pycom09g15970
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0006664
Physical Location & Seq
Reverse (-)
16068806 .. 16071665
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g15970.3

Sequence Viewer

Length: 960 bp
ATGGCACAATTACCTCCAAAAGTTCCAAGCATGACACCCAATTGGCCTGACTCTTCACACAAGAAGATGCCGCCTTTAATGGGCGGCTGTTTTGCCCCCAGTGGAAATGCCATTGCCGCCACCACGTCCCAAAACCCTTGTTGGGTTGATGAATTCCTCGACTTCTCTTCGGCGCGACGGGGATCGCACCGGAGATCCATCAGCGACTCTATCACCTTCCTGGAGGCACCAATGCAGGAAGAATGCCGCGTCTACGCGGCACCTCCAGGCTCAGGCTCGCACTCCCACTCCCACGCTAACAACAATCATCACGAGTTTGATAGGTTTGACGACGAACAATTCATGTCCATGTTCACCGCCGATGAAATCTCCGCCGCCGCCGCCGCCGCCGCGGTGGGACCTACAGGGTCGTCGTCGAACCCGTCCACGCCTTCGGATCATAACAGCATCAACGACAATGAGAAAGAAGCGCAGGGGAAGCAGCAGCAGATCAATAAGCAGCTAAAGAATGAATCAGAAGAGGTGGAAAGTCAATGCGAATTACAAACCACATCCAATGATAGGAAAATTGATCCCAAAAGGGTCAAGAGAATTTTGGCGAACAGACAATCTGCACAAAGATCACGGGTGAGGAAGCTACAATACATATCAGAACTGGAACGCAGTTGTTGTCACCACGGGTTGCATTTCTCGATCGATCAACGCTTGCTTCTAAATGTCGACAACAGTGCTCTCAAACAAAGAATTGCAGCATTGGCGCAGGATAAGATCTTCAAAGACGCTCATCAAGAAGCATTGAAGAGGGAAATAGAGAGACTAAGGCAAGTGTATCACCAACAAAACGTCAAGAAGATGGAGAAGGTTGCACAATCACCAACCTCGCTCACGCCCCGCTCAGACATCATATCTACTCCTCCTCCTGATCAAACGGAACACCTTCTCAATGTGTCCTCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009555 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0045893 GO:0045935 GO:0046907 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

320

Amino Acids

35.62

Weight (kDa)

6.92

Isoelectric Point (pI)

63.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 226, 259
AccBSI CCGCTC 1 cut(s) 894
AccI GTMKAC 2 cut(s) 252, 720
AccII CGCG 4 cut(s) 175, 249, 257, 392
AclWI GGATC 4 cut(s) 189, 190, 444, 566
AcsI RAATTY 2 cut(s) 152, 591
AfiI CCNNNNNNNGG 4 cut(s) 80, 142, 272, 561
AgsI TTSAA 2 cut(s) 775, 799
AjiI CACGTC 1 cut(s) 126
AjnI CCWGG 2 cut(s) 219, 265
AluBI AGCT 2 cut(s) 502, 637
AluI AGCT 2 cut(s) 502, 637
Alw21I GWGCWC 1 cut(s) 733
Alw26I GTCTC 1 cut(s) 808
AlwI GGATC 4 cut(s) 189, 190, 444, 566
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 4 cut(s) 481, 484, 499, 749
ApoI RAATTY 2 cut(s) 152, 591
Asp700I GAANNNNTTC 1 cut(s) 936
AspLEI GCGC 3 cut(s) 175, 472, 760
AspS9I GGNCC 1 cut(s) 398
AsuHPI GGTGA 6 cut(s) 205, 346, 640, 665, 824, 864
AvaII GGWCC 1 cut(s) 398
BanI GGYRCC 2 cut(s) 226, 259
BarI GAAGNNNNNNTAC 2 cut(s) 626, 658
BauI CACGAG 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 733
BbvI GCAGC 4 cut(s) 493, 496, 511, 761
BccI CCATC 2 cut(s) 206, 847
BcgI CGANNNNNNTGC 2 cut(s) 710, 744
BciT130I CCWGG 2 cut(s) 221, 267
BclI TGATCA 1 cut(s) 922
BcoDI GTCTC 1 cut(s) 808
BfmI CTRYAG 1 cut(s) 402
BglII AGATCT 1 cut(s) 768
Bme1390I CCNGG 2 cut(s) 221, 267
Bme18I GGWCC 1 cut(s) 398
BmgBI CACGTC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 3 cut(s) 228, 261, 399
BmrFI CCNGG 2 cut(s) 221, 267
BmrI ACTGGG 1 cut(s) 93
BmsI GCATC 2 cut(s) 57, 456
BmuI ACTGGG 1 cut(s) 93
BpmI CTGGAG 2 cut(s) 242, 249
Bpu10I CCTNAGC 1 cut(s) 271
Bsa29I ATCGAT 1 cut(s) 696
BsaJI CCNNGG 2 cut(s) 390, 676
BsaWI WCCGGW 1 cut(s) 189
BsaXI ACNNNNNCTCC 4 cut(s) 272, 302, 901, 931
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 142, 272, 561
Bse1I ACTGG 2 cut(s) 99, 660
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 2 cut(s) 221, 267
BseCI ATCGAT 1 cut(s) 696
BseDI CCNNGG 2 cut(s) 390, 676
BseGI GGATG 2 cut(s) 551, 953
BseLI CCNNNNNNNGG 4 cut(s) 80, 142, 272, 561
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 285, 909
BseNI ACTGG 2 cut(s) 99, 660
BseRI GAGGAG 2 cut(s) 903, 906
BseXI GCAGC 4 cut(s) 493, 496, 511, 761
BsgI GTGCAG 1 cut(s) 597
Bsh1236I CGCG 4 cut(s) 175, 249, 257, 392
Bsh1285I CGRYCG 1 cut(s) 696
BshFI GGCC 1 cut(s) 46
BshNI GGYRCC 2 cut(s) 226, 259
BshVI ATCGAT 1 cut(s) 696
BsiEI CGRYCG 1 cut(s) 696
BsiHKAI GWGCWC 1 cut(s) 733
BsiSI CCGG 1 cut(s) 190
BslFI GGGAC 2 cut(s) 112, 411
BslI CCNNNNNNNGG 4 cut(s) 80, 142, 272, 561
BsmAI GTCTC 1 cut(s) 808
BsmFI GGGAC 2 cut(s) 112, 411
BsmI GAATGC 1 cut(s) 248
BsnI GGCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 733
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 2 cut(s) 284, 908
BspDI ATCGAT 1 cut(s) 696
BspFNI CGCG 4 cut(s) 175, 249, 257, 392
BspLI GGNNCC 3 cut(s) 228, 261, 399
BspPI GGATC 4 cut(s) 189, 190, 444, 566
BspT107I GGYRCC 2 cut(s) 226, 259
BsrBI CCGCTC 1 cut(s) 894
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 2 cut(s) 99, 660
BssECI CCNNGG 2 cut(s) 390, 676
BssSI CACGAG 1 cut(s) 311
Bst2BI CACGAG 1 cut(s) 311
Bst2UI CCWGG 2 cut(s) 221, 267
Bst4CI ACNGT 1 cut(s) 728
Bst6I CTCTTC 4 cut(s) 58, 172, 513, 794
BstC8I GCNNGC 2 cut(s) 278, 707
BstDEI CTNAG 3 cut(s) 271, 818, 895
BstDSI CCRYGG 2 cut(s) 390, 676
BstF5I GGATG 2 cut(s) 551, 953
BstFNI CGCG 4 cut(s) 175, 249, 257, 392
BstHHI GCGC 3 cut(s) 175, 472, 760
BstMAI GTCTC 1 cut(s) 808
BstMCI CGRYCG 1 cut(s) 696
BstMWI GCNNNNNNNGC 7 cut(s) 116, 380, 383, 386, 389, 478, 755
BstNI CCWGG 2 cut(s) 221, 267
BstSCI CCNGG 2 cut(s) 219, 265
BstSFI CTRYAG 1 cut(s) 402
BstUI CGCG 4 cut(s) 175, 249, 257, 392
BstV1I GCAGC 4 cut(s) 493, 496, 511, 761
BstX2I RGATCY 2 cut(s) 194, 768
BstYI RGATCY 2 cut(s) 194, 768
Bsu15I ATCGAT 1 cut(s) 696
BsuRI GGCC 1 cut(s) 46
BsuTUI ATCGAT 1 cut(s) 696
BtgI CCRYGG 2 cut(s) 390, 676
BtrI CACGTC 1 cut(s) 126
BtsCI GGATG 2 cut(s) 551, 953
BtsIMutI CAGTG 2 cut(s) 106, 733
Cac8I GCNNGC 2 cut(s) 278, 707
CfoI GCGC 3 cut(s) 175, 472, 760
Cfr13I GGNCC 1 cut(s) 398
Cfr42I CCGCGG 1 cut(s) 393
ClaI ATCGAT 1 cut(s) 696
CseI GACGC 2 cut(s) 238, 788
CviAII CATG 3 cut(s) 31, 343, 349
CviJI RGCY 6 cut(s) 46, 87, 270, 276, 502, 637
CviKI_1 RGCY 6 cut(s) 46, 87, 270, 276, 502, 637
DdeI CTNAG 3 cut(s) 271, 818, 895
Eam1104I CTCTTC 4 cut(s) 58, 172, 513, 794
EarI CTCTTC 4 cut(s) 58, 172, 513, 794
EciI GGCGGA 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 398
EcoRI GAATTC 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 219, 265
FaeI CATG 3 cut(s) 34, 346, 352
FaiI YATR 6 cut(s) 32, 344, 350, 441, 647, 905
FaqI GGGAC 2 cut(s) 112, 411
FatI CATG 3 cut(s) 30, 342, 348
FauI CCCGC 1 cut(s) 899
FbaI TGATCA 1 cut(s) 922
FblI GTMKAC 2 cut(s) 252, 720
FokI GGATG 2 cut(s) 538, 940
GlaI GCGC 3 cut(s) 174, 471, 759
GsuI CTGGAG 2 cut(s) 242, 249
HaeIII GGCC 1 cut(s) 46
HapII CCGG 1 cut(s) 190
HgaI GACGC 2 cut(s) 238, 788
HhaI GCGC 3 cut(s) 175, 472, 760
Hin1II CATG 3 cut(s) 34, 346, 352
Hin6I GCGC 3 cut(s) 173, 470, 758
HinP1I GCGC 3 cut(s) 173, 470, 758
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HinfI GANTC 3 cut(s) 50, 206, 512
HpaII CCGG 1 cut(s) 190
HphI GGTGA 6 cut(s) 205, 346, 640, 665, 824, 864
Hpy166II GTNNAC 4 cut(s) 253, 354, 426, 721
Hpy188I TCNGA 4 cut(s) 436, 517, 652, 898
Hpy188III TCNNGA 7 cut(s) 311, 586, 691, 788, 847, 920, 957
Hpy8I GTNNAC 4 cut(s) 253, 354, 426, 721
Hpy99I CGWCG 4 cut(s) 180, 335, 415, 418
HpyAV CCTTC 4 cut(s) 226, 441, 853, 947
HpyCH4III ACNGT 1 cut(s) 728
HpyCH4IV ACGT 2 cut(s) 125, 843
HpyCH4V TGCA 5 cut(s) 235, 614, 685, 749, 866
HpyF10VI GCNNNNNNNGC 7 cut(s) 116, 380, 383, 386, 389, 478, 755
HpyF3I CTNAG 3 cut(s) 271, 818, 895
HpySE526I ACGT 2 cut(s) 125, 843
Hsp92II CATG 3 cut(s) 34, 346, 352
HspAI GCGC 3 cut(s) 173, 470, 758
Ksp22I TGATCA 1 cut(s) 922
KspI CCGCGG 1 cut(s) 393
Lsp1109I GCAGC 4 cut(s) 493, 496, 511, 761
LweI GCATC 2 cut(s) 57, 456
MaeII ACGT 2 cut(s) 125, 843
MaeIII GTNAC 1 cut(s) 671
MbiI CCGCTC 1 cut(s) 894
MboII GAAGA 8 cut(s) 45, 76, 159, 251, 530, 763, 811, 862
MfeI CAATTG 1 cut(s) 40
MflI RGATCY 2 cut(s) 194, 768
MhlI GDGCHC 1 cut(s) 733
MluCI AATT 8 cut(s) 8, 40, 152, 338, 539, 567, 591, 744
MlyI GAGTC 2 cut(s) 44, 200
MroXI GAANNNNTTC 1 cut(s) 936
MseI TTAA 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 2 cut(s) 221, 267
MunI CAATTG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 248
MvaI CCWGG 2 cut(s) 221, 267
MvnI CGCG 4 cut(s) 175, 249, 257, 392
MwoI GCNNNNNNNGC 7 cut(s) 116, 380, 383, 386, 389, 478, 755
NlaIII CATG 3 cut(s) 34, 346, 352
NlaIV GGNNCC 3 cut(s) 228, 261, 399
NmuCI GTSAC 1 cut(s) 671
PcsI WCGNNNNNNNCGW 1 cut(s) 419
PctI GAATGC 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 936
PfeI GAWTC 1 cut(s) 512
PfoI TCCNGGA 1 cut(s) 219
Ple19I CGATCG 1 cut(s) 696
PleI GAGTC 2 cut(s) 44, 200
PpsI GAGTC 2 cut(s) 44, 200
PpuMI RGGWCCY 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 398
Psp6I CCWGG 2 cut(s) 219, 265
PspGI CCWGG 2 cut(s) 219, 265
PspN4I GGNNCC 3 cut(s) 228, 261, 399
PspPI GGNCC 1 cut(s) 398
PspPPI RGGWCCY 1 cut(s) 398
PsuI RGATCY 2 cut(s) 194, 768
PvuI CGATCG 1 cut(s) 696
RseI CAYNNNNRTG 1 cut(s) 347
SacII CCGCGG 1 cut(s) 393
SalI GTCGAC 1 cut(s) 719
SaqAI TTAA 1 cut(s) 77
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 2 cut(s) 44, 200
ScrFI CCNGG 2 cut(s) 221, 267
SduI GDGCHC 1 cut(s) 733
SfaNI GCATC 2 cut(s) 57, 456
SfcI CTRYAG 1 cut(s) 402
Sfr303I CCGCGG 1 cut(s) 393
SgrBI CCGCGG 1 cut(s) 393
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 347
Sse9I AATT 8 cut(s) 8, 40, 152, 338, 539, 567, 591, 744
StyD4I CCNGG 2 cut(s) 219, 265
TaaI ACNGT 1 cut(s) 728
TaiI ACGT 2 cut(s) 128, 846
TaqI TCGA 5 cut(s) 159, 416, 692, 696, 720
TasI AATT 8 cut(s) 8, 40, 152, 338, 539, 567, 591, 744
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 2 cut(s) 106, 733
TseFI GTSAC 1 cut(s) 671
TseI GCWGC 4 cut(s) 481, 484, 499, 749
Tsp45I GTSAC 1 cut(s) 671
TspDTI ATGAA 4 cut(s) 165, 331, 378, 525
TspGWI ACGGA 1 cut(s) 944
TspRI CASTG 2 cut(s) 106, 733
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 2 cut(s) 152, 591
XmiI GTMKAC 2 cut(s) 252, 720
XmnI GAANNNNTTC 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.