RLG00000019026
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006664
Physical Location & Seq
Forward (+)
44972834 .. 44975200
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019026

Sequence Viewer

Length: 1011 bp
ATGGCACAGTTACCCCCAAAGGTTCCAAACATGACCCCAAGTTGGCCGGACTTCAGCCACCCAAAGATGTCGTGTTTTGCACCCACCGGCGGCAACAACGGCAATGCCGCCTCCCAAAACCCTTGTTGGGTCGACGAGTTCCTCGACTTCTCATCGGCCAGGCGGGGATCTCACCGGAGATCCGTCAGCGACTCCATCACATTTCTCGAGGAGCCAATGCAGGACGAATGCCGTGCCTCCGGAGCACCCCCGGAGCCCAACAATAACAACAACAACAACAACAACAGTCACCATGTTGAGTTCGATAGGTTTGACGATGAGCAGTTCATGTCCATGTTTACCACCGATGAAATCGCCGCCGCCGCTGCCGGCCCCACCGGGTCGTGCTCGAACCCTTCTACGCCGTCGGATCACAACAGCATTAACGACGACGATGAGCACCAGCAGCAGCAGCTTGATGATAGTGCTAAGAAGAAGCGAGAGCTGAAGCATGAATCTGAAGAGGCGGAGAGCGAATGCAAATTGGAGGCACAACAGACCCAGAATGGGGATAGCAATGCATCGAAAAACACAACCGGCGACAGAAAAATTGACCCAAAAAGGGTGAAGAGAATCTTGGCAAACAGACAATCTGCACAAAGATCACGGGTGAGGAAGCTGCAATACATTTCAGAGCTGGAACGCAGTGTTACCTCTCTACAGGCCGAAGTTTCAGTGCTGTCACCGCGAGTTGCGTTTCTAGATCACCAACGGTTGCTTCTAAATGTGGACAACAGTGCTCTCAAACAAAGAATTGCAGCATTGGCTCAGGATAAGATTTTCAAAGATGCTCATCAAGAAGCACTGAAGAGGGAAATAGAGAGACTGAGGCAAGTGTATCACCAACAGAATCTCAAGAAGATGGACAACAACAACACTGAACAATCACCAAACTCGGACACCATAACTGCTCAACATCCTGATGCTGCAGCTGCTGATCAGAAAGAACAACTTCTCAATGTTTCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009555 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0045893 GO:0045935 GO:0046907 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

337

Amino Acids

37.66

Weight (kDa)

5.6

Isoelectric Point (pI)

56.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 198 - 245 1.4e-08 Basic region leucine zipper
bZIP_1 PF00170 200 - 244 5.3e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 132
AccII CGCG 1 cut(s) 727
AccIII TCCGGA 1 cut(s) 239
AciI CCGC 8 cut(s) 90, 108, 163, 357, 360, 363, 506, 725
AclWI GGATC 3 cut(s) 174, 175, 417
AcoI YGGCCR 2 cut(s) 44, 156
AcuI CTGAAG 4 cut(s) 37, 506, 519, 866
AfiI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 546, 547, 601
AgsI TTSAA 1 cut(s) 823
AjnI CCWGG 1 cut(s) 158
AjuI GAANNNNNNNTTGG 4 cut(s) 599, 631, 741, 773
AluBI AGCT 5 cut(s) 454, 484, 658, 676, 971
AluI AGCT 5 cut(s) 454, 484, 658, 676, 971
Alw21I GWGCWC 4 cut(s) 247, 389, 441, 781
Alw26I GTCTC 1 cut(s) 856
AlwI GGATC 3 cut(s) 174, 175, 417
AlwNI CAGNNNCTG 1 cut(s) 974
Ama87I CYCGRG 1 cut(s) 206
Aor13HI TCCGGA 1 cut(s) 239
AoxI GGCC 4 cut(s) 44, 156, 370, 702
ApeKI GCWGC 9 cut(s) 365, 445, 448, 451, 658, 797, 965, 968, 971
Asp700I GAANNNNTTC 1 cut(s) 990
AspS9I GGNCC 1 cut(s) 371
AsuC2I CCSGG 2 cut(s) 251, 379
AsuHPI GGTGA 8 cut(s) 164, 281, 616, 661, 714, 737, 872, 918
AvaI CYCGRG 1 cut(s) 206
BanII GRGCYC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 647, 679
Bbv12I GWGCWC 4 cut(s) 247, 389, 441, 781
BbvI GCAGC 9 cut(s) 352, 457, 460, 463, 645, 809, 952, 958, 980
BccI CCATC 2 cut(s) 203, 895
BceAI ACGGC 3 cut(s) 115, 216, 388
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 1 cut(s) 160
BclI TGATCA 1 cut(s) 976
BcnI CCSGG 2 cut(s) 251, 379
BcoDI GTCTC 1 cut(s) 856
BfaI CTAG 1 cut(s) 740
BfmI CTRYAG 2 cut(s) 698, 966
Bme1390I CCNGG 3 cut(s) 160, 251, 379
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 4 cut(s) 24, 213, 255, 373
BmrFI CCNGG 3 cut(s) 160, 251, 379
BmsI GCATC 3 cut(s) 569, 817, 952
Bpu10I CCTNAGC 1 cut(s) 807
BpuEI CTTGAG 1 cut(s) 878
BpuMI CCSGG 2 cut(s) 251, 379
BsaBI GATNNNNATC 1 cut(s) 831
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 2 cut(s) 174, 239
Bsc4I CCNNNNNNNGG 6 cut(s) 42, 89, 127, 546, 547, 601
Bse118I RCCGGY 3 cut(s) 86, 368, 575
Bse3DI GCAATG 2 cut(s) 109, 562
Bse8I GATNNNNATC 1 cut(s) 831
BseAI TCCGGA 1 cut(s) 239
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 955
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 546, 547, 601
BseMI GCAATG 2 cut(s) 109, 562
BseMII CTCAG 2 cut(s) 821, 857
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 9 cut(s) 352, 457, 460, 463, 645, 809, 952, 958, 980
BsgI GTGCAG 1 cut(s) 618
Bsh1236I CGCG 1 cut(s) 727
BshFI GGCC 4 cut(s) 46, 158, 372, 704
BsiHKAI GWGCWC 4 cut(s) 247, 389, 441, 781
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 8 cut(s) 47, 87, 175, 240, 251, 369, 378, 576
BslI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 546, 547, 601
BsmAI GTCTC 1 cut(s) 856
BsmI GAATGC 2 cut(s) 233, 521
BsnI GGCC 4 cut(s) 46, 158, 372, 704
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 5 cut(s) 247, 258, 389, 441, 781
Bsp13I TCCGGA 1 cut(s) 239
Bsp143I GATC 6 cut(s) 167, 179, 409, 641, 742, 976
BspACI CCGC 8 cut(s) 90, 108, 163, 357, 360, 363, 506, 725
BspANI GGCC 4 cut(s) 46, 158, 372, 704
BspCNI CTCAG 2 cut(s) 820, 858
BspEI TCCGGA 1 cut(s) 239
BspFNI CGCG 1 cut(s) 727
BspLI GGNNCC 4 cut(s) 24, 213, 255, 373
BspMAI CTGCAG 1 cut(s) 970
BspPI GGATC 3 cut(s) 174, 175, 417
BsrDI GCAATG 2 cut(s) 109, 562
BsrFI RCCGGY 3 cut(s) 86, 368, 575
BssAI RCCGGY 3 cut(s) 86, 368, 575
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 6 cut(s) 167, 179, 409, 641, 742, 976
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 4 cut(s) 9, 287, 753, 776
Bst6I CTCTTC 3 cut(s) 495, 602, 842
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 3 cut(s) 468, 807, 866
BstF5I GGATG 1 cut(s) 955
BstFNI CGCG 1 cut(s) 727
BstKTI GATC 6 cut(s) 170, 182, 412, 644, 745, 979
BstMAI GTCTC 1 cut(s) 856
BstMBI GATC 6 cut(s) 167, 179, 409, 641, 742, 976
BstMWI GCNNNNNNNGC 9 cut(s) 99, 242, 362, 365, 445, 451, 724, 803, 971
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 3 cut(s) 158, 249, 377
BstSFI CTRYAG 2 cut(s) 698, 966
BstUI CGCG 1 cut(s) 727
BstV1I GCAGC 9 cut(s) 352, 457, 460, 463, 645, 809, 952, 958, 980
BstX2I RGATCY 2 cut(s) 167, 179
BstYI RGATCY 2 cut(s) 167, 179
BsuRI GGCC 4 cut(s) 46, 158, 372, 704
BtsCI GGATG 1 cut(s) 955
BtsI GCAGTG 1 cut(s) 691
BtsIMutI CAGTG 5 cut(s) 691, 720, 781, 842, 915
Cac8I GCNNGC 1 cut(s) 370
CaiI CAGNNNCTG 1 cut(s) 974
Cfr10I RCCGGY 3 cut(s) 86, 368, 575
Cfr13I GGNCC 1 cut(s) 371
CviAII CATG 5 cut(s) 31, 293, 328, 334, 491
DdeI CTNAG 3 cut(s) 468, 807, 866
DpnI GATC 6 cut(s) 169, 181, 411, 643, 744, 978
DpnII GATC 6 cut(s) 167, 179, 409, 641, 742, 976
EaeI YGGCCR 2 cut(s) 44, 156
Eam1104I CTCTTC 3 cut(s) 495, 602, 842
EarI CTCTTC 3 cut(s) 495, 602, 842
EciI GGCGGA 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 258
Eco57I CTGAAG 4 cut(s) 37, 506, 519, 866
Eco88I CYCGRG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 562
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 5 cut(s) 34, 296, 331, 337, 494
FaiI YATR 6 cut(s) 32, 294, 329, 335, 492, 944
FalI AAGNNNNNCTT 4 cut(s) 599, 631, 975, 1007
FatI CATG 5 cut(s) 30, 292, 327, 333, 490
FauI CCCGC 1 cut(s) 156
FbaI TGATCA 1 cut(s) 976
FblI GTMKAC 1 cut(s) 132
FokI GGATG 1 cut(s) 942
FriOI GRGCYC 1 cut(s) 258
FspBI CTAG 1 cut(s) 740
HaeIII GGCC 4 cut(s) 46, 158, 372, 704
HapII CCGG 8 cut(s) 47, 87, 175, 240, 251, 369, 378, 576
Hin1II CATG 5 cut(s) 34, 296, 331, 337, 494
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 4 cut(s) 191, 494, 612, 889
HpaII CCGG 8 cut(s) 47, 87, 175, 240, 251, 369, 378, 576
HphI GGTGA 8 cut(s) 164, 281, 616, 661, 714, 737, 872, 918
Hpy166II GTNNAC 3 cut(s) 133, 339, 769
Hpy188I TCNGA 5 cut(s) 409, 499, 673, 937, 981
Hpy188III TCNNGA 8 cut(s) 206, 240, 740, 809, 836, 895, 959, 1008
Hpy8I GTNNAC 3 cut(s) 133, 339, 769
Hpy99I CGWCG 4 cut(s) 137, 409, 431, 434
HpyAV CCTTC 1 cut(s) 405
HpyCH4III ACNGT 4 cut(s) 9, 287, 753, 776
HpyCH4V TGCA 8 cut(s) 80, 220, 519, 560, 635, 661, 797, 968
HpyF10VI GCNNNNNNNGC 9 cut(s) 99, 242, 362, 365, 445, 451, 724, 803, 971
HpyF3I CTNAG 3 cut(s) 468, 807, 866
Hsp92II CATG 5 cut(s) 34, 296, 331, 337, 494
Kpn2I TCCGGA 1 cut(s) 239
KroI GCCGGC 1 cut(s) 368
KroNI GCCGGC 1 cut(s) 370
Ksp22I TGATCA 1 cut(s) 976
Kzo9I GATC 6 cut(s) 167, 179, 409, 641, 742, 976
LmnI GCTCC 3 cut(s) 211, 242, 253
Lsp1109I GCAGC 9 cut(s) 352, 457, 460, 463, 645, 809, 952, 958, 980
LweI GCATC 3 cut(s) 569, 817, 952
MaeI CTAG 1 cut(s) 740
MaeIII GTNAC 4 cut(s) 9, 287, 688, 720
MalI GATC 6 cut(s) 169, 181, 411, 643, 744, 978
MboI GATC 6 cut(s) 167, 179, 409, 641, 742, 976
MboII GAAGA 6 cut(s) 484, 512, 619, 859, 910, 996
MflI RGATCY 2 cut(s) 167, 179
MhlI GDGCHC 5 cut(s) 247, 258, 389, 441, 781
MluCI AATT 3 cut(s) 521, 588, 792
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 387
Mph1103I ATGCAT 1 cut(s) 562
MroI TCCGGA 1 cut(s) 239
MroNI GCCGGC 1 cut(s) 368
MroXI GAANNNNTTC 1 cut(s) 990
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 2 cut(s) 332, 960
MspA1I CMGCKG 2 cut(s) 365, 971
MspI CCGG 8 cut(s) 47, 87, 175, 240, 251, 369, 378, 576
MspR9I CCNGG 3 cut(s) 160, 251, 379
Mva1269I GAATGC 2 cut(s) 233, 521
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 727
MwoI GCNNNNNNNGC 9 cut(s) 99, 242, 362, 365, 445, 451, 724, 803, 971
NaeI GCCGGC 1 cut(s) 370
NciI CCSGG 2 cut(s) 251, 379
NdeII GATC 6 cut(s) 167, 179, 409, 641, 742, 976
NgoMIV GCCGGC 1 cut(s) 368
NlaIII CATG 5 cut(s) 34, 296, 331, 337, 494
NlaIV GGNNCC 4 cut(s) 24, 213, 255, 373
NmuCI GTSAC 2 cut(s) 287, 720
NsiI ATGCAT 1 cut(s) 562
PaeR7I CTCGAG 1 cut(s) 206
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PctI GAATGC 2 cut(s) 233, 521
PdiI GCCGGC 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 990
PfeI GAWTC 3 cut(s) 494, 612, 889
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 4 cut(s) 24, 213, 255, 373
PspPI GGNCC 1 cut(s) 371
PstI CTGCAG 1 cut(s) 970
PstNI CAGNNNCTG 1 cut(s) 974
PsuI RGATCY 2 cut(s) 167, 179
PvuII CAGCTG 1 cut(s) 971
RseI CAYNNNNRTG 2 cut(s) 332, 960
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 423
Sau3AI GATC 6 cut(s) 167, 179, 409, 641, 742, 976
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 3 cut(s) 160, 251, 379
SduI GDGCHC 5 cut(s) 247, 258, 389, 441, 781
SetI ASST 8 cut(s) 24, 311, 456, 486, 660, 678, 695, 973
SfaNI GCATC 3 cut(s) 569, 817, 952
SfcI CTRYAG 2 cut(s) 698, 966
Sfr274I CTCGAG 1 cut(s) 206
SgrAI CRCCGGYG 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 2 cut(s) 332, 960
SmlI CTYRAG 2 cut(s) 206, 893
SmoI CTYRAG 2 cut(s) 206, 893
Sse9I AATT 3 cut(s) 521, 588, 792
SsiI CCGC 8 cut(s) 90, 108, 163, 357, 360, 363, 506, 725
SspMI CTAG 1 cut(s) 740
StyD4I CCNGG 3 cut(s) 158, 249, 377
TaaI ACNGT 4 cut(s) 9, 287, 753, 776
TaqI TCGA 6 cut(s) 132, 144, 207, 303, 389, 563
TasI AATT 3 cut(s) 521, 588, 792
TauI GCSGC 5 cut(s) 93, 110, 359, 362, 365
TfiI GAWTC 3 cut(s) 494, 612, 889
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 5 cut(s) 691, 720, 781, 849, 922
TseFI GTSAC 2 cut(s) 287, 720
TseI GCWGC 9 cut(s) 365, 445, 448, 451, 658, 797, 965, 968, 971
Tsp45I GTSAC 2 cut(s) 287, 720
TspDTI ATGAA 3 cut(s) 316, 363, 507
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 5 cut(s) 691, 720, 781, 849, 922
XbaI TCTAGA 1 cut(s) 739
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 990
XspI CTAG 1 cut(s) 740
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.