MD09G1240900.v1.1
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0006664
Physical Location & Seq
Reverse (-)
30805867 .. 30809564
3698 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1240900.v1.1.491

Sequence Viewer

Length: 987 bp
ATGGCACAATTACCTCCAAAAGCTCCAAGCATGACACCCAATTGGCCTGACTCTTCACACCAGAAGATGCCGCCTTCAATGGGCGGCTGTTTTGCGCCCAATGGAAATGCCATTGCCGCCACCACGTCCCAAAACCCTAGTTGGGTTGATGAATTCCTCGACTTCTCTTCGGCGCGACGGGGATCCCACCGGAGATCCATCAGCGACTCTATCACCTTCCTGGAGGCACCAATGCAGGAAGAATGCCGCGTCTACGCGGCACCTCCAGGCTCAGGCCCGCACTCCCACTCCCAAGCTAACAACAATCATCACGAGTTTGATAGGTTTGACGACGAACAATTCATGTCCATGTTCACCACCCATGAAATCTCCGCCGCCGCCGCCGCTGCCGTGGTGGGACCTACAGGATCGTCGTCGAACCCGTCCACGCCTTCGGATCATAACAGCATCAACGACGATGAGAAAGAAGCGCAGGGGAAGCAGCAGCAGATCAATAAACAGCTAAAGAATGAATCAGAAGAGGTGGAAAGCCAATGCGAATTACAAACCACATCCAATGATAGGAAAATTGATCCCAAAAGGGTCAAGAGAATTTTGGCGAACAGACAATCTGCACAAAGATCACGGGTGAGGAAGCTACAATACATATCAGAGCTCGAACGCAGTGTTACCTCTCTGCAAGTTGAAGTTTCAGTGTTGTCACCACGGGTTGCATTTTTCGATCATCAACGCTTGCTTCTAAATGTCGACAACAGTGCTCTCAAACAAAGAATTGCAGCATTGGCGCAGGATAAGATCTTCAAAGACGCTCATCAAGAAGCATTGAAGAGAGAAATAGAGAGACTAAGGCAAGTGTATCACCAACAAAACGTCAAGAAGATGGAGAAGGTTGCACAATCACCAACCTCACTCACGCCCAGCTCAGACACCATATCTAATCCTCCTCCTGATCAAACGGAACACCTTCTCAATGTGTCCTCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009555 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0045893 GO:0045935 GO:0046907 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

329

Amino Acids

36.55

Weight (kDa)

6.46

Isoelectric Point (pI)

61.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 191 - 235 1.1e-07 Basic region leucine zipper
bZIP_1 PF00170 193 - 233 1.7e-08 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 226, 259
AccI GTMKAC 2 cut(s) 252, 747
AccII CGCG 3 cut(s) 175, 249, 257
AclWI GGATC 6 cut(s) 177, 189, 190, 415, 444, 566
AcsI RAATTY 2 cut(s) 152, 591
AfiI CCNNNNNNNGG 4 cut(s) 80, 142, 272, 561
AgsI TTSAA 4 cut(s) 78, 686, 802, 826
AjiI CACGTC 1 cut(s) 126
AjnI CCWGG 2 cut(s) 219, 265
AluBI AGCT 6 cut(s) 23, 296, 502, 637, 655, 921
AluI AGCT 6 cut(s) 23, 296, 502, 637, 655, 921
Alw21I GWGCWC 2 cut(s) 657, 760
Alw26I GTCTC 1 cut(s) 835
AlwI GGATC 6 cut(s) 177, 189, 190, 415, 444, 566
AoxI GGCC 2 cut(s) 44, 274
ApeKI GCWGC 4 cut(s) 386, 481, 484, 776
ApoI RAATTY 2 cut(s) 152, 591
Asp700I GAANNNNTTC 1 cut(s) 963
AspLEI GCGC 4 cut(s) 97, 175, 472, 787
AspS9I GGNCC 2 cut(s) 275, 398
AsuHPI GGTGA 6 cut(s) 205, 346, 640, 693, 851, 891
AvaII GGWCC 1 cut(s) 398
BamHI GGATCC 1 cut(s) 182
BanI GGYRCC 2 cut(s) 226, 259
BanII GRGCYC 1 cut(s) 657
BarI GAAGNNNNNNTAC 2 cut(s) 626, 658
BauI CACGAG 1 cut(s) 311
Bbv12I GWGCWC 2 cut(s) 657, 760
BbvI GCAGC 4 cut(s) 373, 493, 496, 788
BccI CCATC 2 cut(s) 206, 874
BceAI ACGGC 1 cut(s) 374
BcgI CGANNNNNNTGC 2 cut(s) 737, 771
BciT130I CCWGG 2 cut(s) 221, 267
BclI TGATCA 1 cut(s) 949
BcoDI GTCTC 1 cut(s) 835
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 402
BglII AGATCT 1 cut(s) 795
Bme1390I CCNGG 2 cut(s) 221, 267
Bme18I GGWCC 1 cut(s) 398
BmgBI CACGTC 1 cut(s) 126
BmgT120I GGNCC 2 cut(s) 275, 398
BmiI GGNNCC 4 cut(s) 184, 228, 261, 399
BmrFI CCNGG 2 cut(s) 221, 267
BmsI GCATC 2 cut(s) 57, 456
BpmI CTGGAG 2 cut(s) 242, 249
Bpu10I CCTNAGC 1 cut(s) 271
BsaJI CCNNGG 2 cut(s) 390, 704
BsaWI WCCGGW 1 cut(s) 189
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 142, 272, 561
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 2 cut(s) 221, 267
BseDI CCNNGG 2 cut(s) 390, 704
BseGI GGATG 2 cut(s) 551, 980
BseLI CCNNNNNNNGG 4 cut(s) 80, 142, 272, 561
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 285, 936
BseRI GAGGAG 1 cut(s) 933
BseXI GCAGC 4 cut(s) 373, 493, 496, 788
BseYI CCCAGC 1 cut(s) 917
BsgI GTGCAG 1 cut(s) 597
Bsh1236I CGCG 3 cut(s) 175, 249, 257
BshFI GGCC 2 cut(s) 46, 276
BshNI GGYRCC 2 cut(s) 226, 259
BsiHKAI GWGCWC 2 cut(s) 657, 760
BsiSI CCGG 1 cut(s) 190
BslFI GGGAC 2 cut(s) 112, 411
BslI CCNNNNNNNGG 4 cut(s) 80, 142, 272, 561
BsmAI GTCTC 1 cut(s) 835
BsmFI GGGAC 2 cut(s) 112, 411
BsmI GAATGC 1 cut(s) 248
BsnI GGCC 2 cut(s) 46, 276
Bsp1286I GDGCHC 2 cut(s) 657, 760
BspANI GGCC 2 cut(s) 46, 276
BspCNI CTCAG 2 cut(s) 284, 935
BspFNI CGCG 3 cut(s) 175, 249, 257
BspLI GGNNCC 4 cut(s) 184, 228, 261, 399
BspPI GGATC 6 cut(s) 177, 189, 190, 415, 444, 566
BspT107I GGYRCC 2 cut(s) 226, 259
BsrDI GCAATG 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 390, 704
BssSI CACGAG 1 cut(s) 311
Bst2BI CACGAG 1 cut(s) 311
Bst2UI CCWGG 2 cut(s) 221, 267
Bst4CI ACNGT 1 cut(s) 755
Bst6I CTCTTC 4 cut(s) 58, 172, 513, 821
BstC8I GCNNGC 2 cut(s) 278, 734
BstDEI CTNAG 3 cut(s) 271, 845, 922
BstDSI CCRYGG 2 cut(s) 390, 704
BstF5I GGATG 2 cut(s) 551, 980
BstFNI CGCG 3 cut(s) 175, 249, 257
BstHHI GCGC 4 cut(s) 97, 175, 472, 787
BstMAI GTCTC 1 cut(s) 835
BstMWI GCNNNNNNNGC 6 cut(s) 116, 380, 383, 386, 478, 782
BstNI CCWGG 2 cut(s) 221, 267
BstSCI CCNGG 2 cut(s) 219, 265
BstSFI CTRYAG 1 cut(s) 402
BstUI CGCG 3 cut(s) 175, 249, 257
BstV1I GCAGC 4 cut(s) 373, 493, 496, 788
BstX2I RGATCY 3 cut(s) 182, 194, 795
BstYI RGATCY 3 cut(s) 182, 194, 795
BsuRI GGCC 2 cut(s) 46, 276
BtgI CCRYGG 2 cut(s) 390, 704
BtrI CACGTC 1 cut(s) 126
BtsCI GGATG 2 cut(s) 551, 980
BtsI GCAGTG 1 cut(s) 670
BtsIMutI CAGTG 3 cut(s) 670, 699, 760
Cac8I GCNNGC 2 cut(s) 278, 734
CfoI GCGC 4 cut(s) 97, 175, 472, 787
Cfr13I GGNCC 2 cut(s) 275, 398
CseI GACGC 2 cut(s) 238, 815
CviAII CATG 4 cut(s) 31, 343, 349, 362
DdeI CTNAG 3 cut(s) 271, 845, 922
Eam1104I CTCTTC 4 cut(s) 58, 172, 513, 821
EarI CTCTTC 4 cut(s) 58, 172, 513, 821
EciI GGCGGA 1 cut(s) 361
Ecl136II GAGCTC 1 cut(s) 655
Eco24I GRGCYC 1 cut(s) 657
Eco47I GGWCC 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 655
EcoICRI GAGCTC 1 cut(s) 655
EcoO109I RGGNCCY 1 cut(s) 398
EcoRI GAATTC 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 219, 265
EcoT38I GRGCYC 1 cut(s) 657
FaeI CATG 4 cut(s) 34, 346, 352, 365
FaiI YATR 7 cut(s) 32, 344, 350, 363, 441, 647, 932
FaqI GGGAC 2 cut(s) 112, 411
FatI CATG 4 cut(s) 30, 342, 348, 361
FauI CCCGC 1 cut(s) 285
FbaI TGATCA 1 cut(s) 949
FblI GTMKAC 2 cut(s) 252, 747
FokI GGATG 2 cut(s) 538, 967
FriOI GRGCYC 1 cut(s) 657
FspBI CTAG 1 cut(s) 138
GlaI GCGC 4 cut(s) 96, 174, 471, 786
GsaI CCCAGC 1 cut(s) 921
GsuI CTGGAG 2 cut(s) 242, 249
HaeIII GGCC 2 cut(s) 46, 276
HapII CCGG 1 cut(s) 190
HgaI GACGC 2 cut(s) 238, 815
HhaI GCGC 4 cut(s) 97, 175, 472, 787
Hin1II CATG 4 cut(s) 34, 346, 352, 365
Hin6I GCGC 4 cut(s) 95, 173, 470, 785
HinP1I GCGC 4 cut(s) 95, 173, 470, 785
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HinfI GANTC 3 cut(s) 50, 206, 512
HpaII CCGG 1 cut(s) 190
HphI GGTGA 6 cut(s) 205, 346, 640, 693, 851, 891
Hpy166II GTNNAC 4 cut(s) 253, 354, 426, 748
Hpy188I TCNGA 4 cut(s) 436, 517, 652, 925
Hpy188III TCNNGA 6 cut(s) 311, 586, 815, 874, 947, 984
Hpy8I GTNNAC 4 cut(s) 253, 354, 426, 748
Hpy99I CGWCG 5 cut(s) 180, 335, 415, 418, 458
HpyAV CCTTC 5 cut(s) 84, 226, 441, 880, 974
HpyCH4III ACNGT 1 cut(s) 755
HpyCH4IV ACGT 2 cut(s) 125, 870
HpyCH4V TGCA 6 cut(s) 235, 614, 679, 713, 776, 893
HpyF10VI GCNNNNNNNGC 6 cut(s) 116, 380, 383, 386, 478, 782
HpyF3I CTNAG 3 cut(s) 271, 845, 922
HpySE526I ACGT 2 cut(s) 125, 870
Hsp92II CATG 4 cut(s) 34, 346, 352, 365
HspAI GCGC 4 cut(s) 95, 173, 470, 785
Ksp22I TGATCA 1 cut(s) 949
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 4 cut(s) 373, 493, 496, 788
LweI GCATC 2 cut(s) 57, 456
MaeI CTAG 1 cut(s) 138
MaeII ACGT 2 cut(s) 125, 870
MaeIII GTNAC 2 cut(s) 667, 699
MboII GAAGA 8 cut(s) 45, 76, 159, 251, 530, 790, 838, 889
MfeI CAATTG 1 cut(s) 40
MflI RGATCY 3 cut(s) 182, 194, 795
MhlI GDGCHC 2 cut(s) 657, 760
MluCI AATT 8 cut(s) 8, 40, 152, 338, 539, 567, 591, 771
MlyI GAGTC 2 cut(s) 44, 200
MroXI GAANNNNTTC 1 cut(s) 963
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 2 cut(s) 221, 267
MunI CAATTG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 248
MvaI CCWGG 2 cut(s) 221, 267
MvnI CGCG 3 cut(s) 175, 249, 257
MwoI GCNNNNNNNGC 6 cut(s) 116, 380, 383, 386, 478, 782
NlaIII CATG 4 cut(s) 34, 346, 352, 365
NlaIV GGNNCC 4 cut(s) 184, 228, 261, 399
NmuCI GTSAC 1 cut(s) 699
PcsI WCGNNNNNNNCGW 1 cut(s) 419
PctI GAATGC 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 963
PfeI GAWTC 1 cut(s) 512
PfoI TCCNGGA 1 cut(s) 219
PleI GAGTC 2 cut(s) 44, 200
PpsI GAGTC 2 cut(s) 44, 200
PpuMI RGGWCCY 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 657
Psp5II RGGWCCY 1 cut(s) 398
Psp6I CCWGG 2 cut(s) 219, 265
PspFI CCCAGC 1 cut(s) 917
PspGI CCWGG 2 cut(s) 219, 265
PspN4I GGNNCC 4 cut(s) 184, 228, 261, 399
PspPI GGNCC 2 cut(s) 275, 398
PspPPI RGGWCCY 1 cut(s) 398
PsuI RGATCY 3 cut(s) 182, 194, 795
RseI CAYNNNNRTG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 657
SalI GTCGAC 1 cut(s) 746
Sau96I GGNCC 2 cut(s) 275, 398
SchI GAGTC 2 cut(s) 44, 200
ScrFI CCNGG 2 cut(s) 221, 267
SduI GDGCHC 2 cut(s) 657, 760
SfaNI GCATC 2 cut(s) 57, 456
SfcI CTRYAG 1 cut(s) 402
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 347
Sse9I AATT 8 cut(s) 8, 40, 152, 338, 539, 567, 591, 771
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 657
StyD4I CCNGG 2 cut(s) 219, 265
TaaI ACNGT 1 cut(s) 755
TaiI ACGT 2 cut(s) 128, 873
TaqI TCGA 5 cut(s) 159, 416, 657, 720, 747
TasI AATT 8 cut(s) 8, 40, 152, 338, 539, 567, 591, 771
TauI GCSGC 9 cut(s) 73, 87, 119, 249, 260, 377, 380, 383, 386
TfiI GAWTC 1 cut(s) 512
TscAI CASTG 3 cut(s) 670, 699, 760
TseFI GTSAC 1 cut(s) 699
TseI GCWGC 4 cut(s) 386, 481, 484, 776
Tsp45I GTSAC 1 cut(s) 699
TspDTI ATGAA 4 cut(s) 165, 331, 378, 525
TspGWI ACGGA 1 cut(s) 971
TspRI CASTG 3 cut(s) 670, 699, 760
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 2 cut(s) 152, 591
XmiI GTMKAC 2 cut(s) 252, 747
XmnI GAANNNNTTC 1 cut(s) 963
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.