RchiOBHm_Chr2g0128811
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006664
Physical Location & Seq
Forward (+)
44140781 .. 44144101
3321 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50053

Sequence Viewer

Length: 1008 bp
ATGGCACAGTTACCCCCAAAGGTTCCAAACATGACCCCAAGTTGGCCGGACTTCAGCCACCAAAAGATGTCGTGTTTTGCACCCACCGGCGGCAACAACGGCAATGCCGCCTCCCAAAACCCTTGTTGGGTCGACGAGTTCCTCGACTTCTCGTCAGCCAGGCGGGGATCTCACCGGAGATCCGTCAGCGACTCCATCACATTTCTCGAGGCGCCAATGCAGCACGAATGCCGCGCCTCTGGAGCACCCCCGGAGCCCAACAACAACAACAACAGTCACCATGTTCATGAGTTCGATAGGTTTGACGATGAGCAGTTCATGTCCATGTTTACCACCGATGAAATCGCCGCCGCAGCCGCTGCCGGCCCCACCGGGTCGTGCTCGAACCCTTCGACGCCGTCGGATCACAACAGCATTAACGACGACGATGAACACCAGCAGCAGCAGCAGCTTGATGATGGTGACAAGAAGAAGCGCGAGCTGAAGCATGAATCTGAAGAGGCGGAGAGCGAATGCAAATTGGAGGCACAACAAACCCAGAATGGGGATCGCAATGCATCAAAAAACACAACCGGCGACAGAAAAATTGACCCAAAAAGGGTGAAGAGAATCTTGGCAAACAGACAATCTGCACAAAGATCACGGGTGAGGAAGCTGCAATACATTTCAGAGCTGGAACGCAGTGTTACCTCTCTACAGGCCGAAGTTTCAGTGCTGTCACCGCGAGTTGCGTTTCTAGATCACCAACGGTTGCTTCTAAATGTAGACAACAGTGCTCTCAAACAAAGAATTGCAGCATTGGCTCAGGATAAGATTTTCAAAGATGCTCATCAAGAAGCACTGAAGAGGGAAATAGAGAGACTGAGGCAAGTGTATCACCAACAGAATCTCAAGAAGATGAACAACAACAACATTGAACAATCACCAAACTCGGACACCATAACTGCTCAACATCCTGATGCTGCTGCTGCTGATCAGAAAGAACAACTTCTCAATGTTTCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009555 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0045893 GO:0045935 GO:0046907 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

335

Amino Acids

37.63

Weight (kDa)

6.02

Isoelectric Point (pI)

56.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 197 - 244 1.4e-08 Basic region leucine zipper
bZIP_1 PF00170 199 - 242 5.2e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AccI GTMKAC 2 cut(s) 132, 765
AccII CGCG 3 cut(s) 234, 477, 724
AciI CCGC 9 cut(s) 90, 108, 163, 232, 348, 351, 357, 503, 722
AclWI GGATC 4 cut(s) 174, 175, 411, 555
AcoI YGGCCR 1 cut(s) 44
AcuI CTGAAG 4 cut(s) 37, 503, 516, 863
AcyI GRCGYC 2 cut(s) 212, 395
AfiI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 543, 544, 598
AgsI TTSAA 2 cut(s) 820, 917
AhdI GACNNNNNGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 158
AjuI GAANNNNNNNTTGG 4 cut(s) 596, 628, 738, 770
AluBI AGCT 4 cut(s) 451, 481, 655, 673
AluI AGCT 4 cut(s) 451, 481, 655, 673
Alw21I GWGCWC 3 cut(s) 247, 383, 778
Alw26I GTCTC 1 cut(s) 853
AlwI GGATC 4 cut(s) 174, 175, 411, 555
AlwNI CAGNNNCTG 1 cut(s) 359
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 3 cut(s) 44, 364, 699
Asp700I GAANNNNTTC 1 cut(s) 987
AspLEI GCGC 3 cut(s) 214, 236, 477
AspS9I GGNCC 1 cut(s) 365
AsuC2I CCSGG 2 cut(s) 251, 373
AsuHPI GGTGA 9 cut(s) 164, 269, 473, 613, 658, 711, 734, 869, 915
AvaI CYCGRG 1 cut(s) 206
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 644, 676
Bbv12I GWGCWC 3 cut(s) 247, 383, 778
BccI CCATC 2 cut(s) 203, 452
BceAI ACGGC 2 cut(s) 115, 382
BciT130I CCWGG 1 cut(s) 160
BclI TGATCA 1 cut(s) 973
BcnI CCSGG 2 cut(s) 251, 373
BcoDI GTCTC 1 cut(s) 853
BfaI CTAG 1 cut(s) 737
BfmI CTRYAG 1 cut(s) 695
BfoI RGCGCY 1 cut(s) 215
Bme1390I CCNGG 3 cut(s) 160, 251, 373
BmeRI GACNNNNNGTC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 4 cut(s) 24, 213, 255, 367
BmrFI CCNGG 3 cut(s) 160, 251, 373
BmsI GCATC 3 cut(s) 566, 814, 949
BpmI CTGGAG 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 875
BpuMI CCSGG 2 cut(s) 251, 373
BsaBI GATNNNNATC 1 cut(s) 828
BsaHI GRCGYC 2 cut(s) 212, 395
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 1 cut(s) 174
Bsc4I CCNNNNNNNGG 6 cut(s) 42, 89, 127, 543, 544, 598
Bse118I RCCGGY 3 cut(s) 86, 362, 572
Bse3DI GCAATG 2 cut(s) 109, 559
Bse8I GATNNNNATC 1 cut(s) 828
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 952
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 543, 544, 598
BseMI GCAATG 2 cut(s) 109, 559
BseMII CTCAG 2 cut(s) 818, 854
BsgI GTGCAG 1 cut(s) 615
Bsh1236I CGCG 3 cut(s) 234, 477, 724
BshFI GGCC 3 cut(s) 46, 366, 701
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 3 cut(s) 247, 383, 778
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 7 cut(s) 47, 87, 175, 251, 363, 372, 573
BslI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 543, 544, 598
BsmAI GTCTC 1 cut(s) 853
BsmI GAATGC 2 cut(s) 233, 518
BsnI GGCC 3 cut(s) 46, 366, 701
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 4 cut(s) 247, 258, 383, 778
Bsp143I GATC 7 cut(s) 167, 179, 403, 547, 638, 739, 973
BspACI CCGC 9 cut(s) 90, 108, 163, 232, 348, 351, 357, 503, 722
BspANI GGCC 3 cut(s) 46, 366, 701
BspCNI CTCAG 2 cut(s) 817, 855
BspFNI CGCG 3 cut(s) 234, 477, 724
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 4 cut(s) 24, 213, 255, 367
BspPI GGATC 4 cut(s) 174, 175, 411, 555
BspT107I GGYRCC 1 cut(s) 211
BsrDI GCAATG 2 cut(s) 109, 559
BsrFI RCCGGY 3 cut(s) 86, 362, 572
BssAI RCCGGY 3 cut(s) 86, 362, 572
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 7 cut(s) 167, 179, 403, 547, 638, 739, 973
BssNI GRCGYC 2 cut(s) 212, 395
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 4 cut(s) 9, 275, 750, 773
Bst6I CTCTTC 3 cut(s) 492, 599, 839
BstACI GRCGYC 2 cut(s) 212, 395
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 2 cut(s) 364, 479
BstDEI CTNAG 2 cut(s) 804, 863
BstF5I GGATG 1 cut(s) 952
BstFNI CGCG 3 cut(s) 234, 477, 724
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 3 cut(s) 214, 236, 477
BstKTI GATC 7 cut(s) 170, 182, 406, 550, 641, 742, 976
BstMAI GTCTC 1 cut(s) 853
BstMBI GATC 7 cut(s) 167, 179, 403, 547, 638, 739, 973
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 3 cut(s) 158, 249, 371
BstSFI CTRYAG 1 cut(s) 695
BstUI CGCG 3 cut(s) 234, 477, 724
BstX2I RGATCY 2 cut(s) 167, 179
BstYI RGATCY 2 cut(s) 167, 179
BsuRI GGCC 3 cut(s) 46, 366, 701
BtsCI GGATG 1 cut(s) 952
BtsI GCAGTG 1 cut(s) 688
BtsIMutI CAGTG 4 cut(s) 688, 717, 778, 839
Cac8I GCNNGC 2 cut(s) 364, 479
CaiI CAGNNNCTG 1 cut(s) 359
CciI TCATGA 1 cut(s) 286
CfoI GCGC 3 cut(s) 214, 236, 477
Cfr10I RCCGGY 3 cut(s) 86, 362, 572
Cfr13I GGNCC 1 cut(s) 365
CseI GACGC 1 cut(s) 403
CviAII CATG 6 cut(s) 31, 281, 287, 319, 325, 488
DdeI CTNAG 2 cut(s) 804, 863
DinI GGCGCC 1 cut(s) 213
DpnI GATC 7 cut(s) 169, 181, 405, 549, 640, 741, 975
DpnII GATC 7 cut(s) 167, 179, 403, 547, 638, 739, 973
DriI GACNNNNNGTC 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 44
Eam1104I CTCTTC 3 cut(s) 492, 599, 839
Eam1105I GACNNNNNGTC 1 cut(s) 151
EarI CTCTTC 3 cut(s) 492, 599, 839
EciI GGCGGA 1 cut(s) 518
Eco24I GRGCYC 1 cut(s) 258
Eco57I CTGAAG 4 cut(s) 37, 503, 516, 863
Eco88I CYCGRG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 258
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
FaeI CATG 6 cut(s) 34, 284, 290, 322, 328, 491
FaiI YATR 7 cut(s) 32, 282, 288, 320, 326, 489, 941
FalI AAGNNNNNCTT 4 cut(s) 596, 628, 972, 1004
FatI CATG 6 cut(s) 30, 280, 286, 318, 324, 487
FauI CCCGC 1 cut(s) 156
FbaI TGATCA 1 cut(s) 973
FblI GTMKAC 2 cut(s) 132, 765
FokI GGATG 1 cut(s) 939
FriOI GRGCYC 1 cut(s) 258
FspBI CTAG 1 cut(s) 737
GlaI GCGC 3 cut(s) 213, 235, 476
GsuI CTGGAG 1 cut(s) 261
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 3 cut(s) 46, 366, 701
HapII CCGG 7 cut(s) 47, 87, 175, 251, 363, 372, 573
HgaI GACGC 1 cut(s) 403
HhaI GCGC 3 cut(s) 214, 236, 477
Hin1I GRCGYC 2 cut(s) 212, 395
Hin1II CATG 6 cut(s) 34, 284, 290, 322, 328, 491
Hin6I GCGC 3 cut(s) 212, 234, 475
HinP1I GCGC 3 cut(s) 212, 234, 475
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 4 cut(s) 191, 491, 609, 886
HpaII CCGG 7 cut(s) 47, 87, 175, 251, 363, 372, 573
HphI GGTGA 9 cut(s) 164, 269, 473, 613, 658, 711, 734, 869, 915
Hpy166II GTNNAC 3 cut(s) 133, 330, 766
Hpy188I TCNGA 5 cut(s) 403, 496, 670, 934, 978
Hpy188III TCNNGA 9 cut(s) 206, 240, 287, 737, 806, 833, 892, 956, 1005
Hpy8I GTNNAC 3 cut(s) 133, 330, 766
Hpy99I CGWCG 5 cut(s) 137, 397, 403, 425, 428
HpyAV CCTTC 1 cut(s) 399
HpyCH4III ACNGT 4 cut(s) 9, 275, 750, 773
HpyCH4V TGCA 7 cut(s) 80, 220, 516, 557, 632, 658, 794
HpyF3I CTNAG 2 cut(s) 804, 863
Hsp92I GRCGYC 2 cut(s) 212, 395
Hsp92II CATG 6 cut(s) 34, 284, 290, 322, 328, 491
HspAI GCGC 3 cut(s) 212, 234, 475
KasI GGCGCC 1 cut(s) 211
KroI GCCGGC 1 cut(s) 362
KroNI GCCGGC 1 cut(s) 364
Ksp22I TGATCA 1 cut(s) 973
Kzo9I GATC 7 cut(s) 167, 179, 403, 547, 638, 739, 973
LmnI GCTCC 2 cut(s) 242, 253
LweI GCATC 3 cut(s) 566, 814, 949
MaeI CTAG 1 cut(s) 737
MaeIII GTNAC 5 cut(s) 9, 275, 461, 685, 717
MalI GATC 7 cut(s) 169, 181, 405, 549, 640, 741, 975
MboI GATC 7 cut(s) 167, 179, 403, 547, 638, 739, 973
MboII GAAGA 6 cut(s) 481, 509, 616, 856, 907, 993
MflI RGATCY 2 cut(s) 167, 179
MhlI GDGCHC 4 cut(s) 247, 258, 383, 778
MluCI AATT 3 cut(s) 518, 585, 789
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 381
Mph1103I ATGCAT 1 cut(s) 559
MroNI GCCGGC 1 cut(s) 362
MroXI GAANNNNTTC 1 cut(s) 987
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 3 cut(s) 285, 323, 957
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 7 cut(s) 47, 87, 175, 251, 363, 372, 573
MspR9I CCNGG 3 cut(s) 160, 251, 373
Mva1269I GAATGC 2 cut(s) 233, 518
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 3 cut(s) 234, 477, 724
NaeI GCCGGC 1 cut(s) 364
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 2 cut(s) 251, 373
NdeII GATC 7 cut(s) 167, 179, 403, 547, 638, 739, 973
NgoMIV GCCGGC 1 cut(s) 362
NlaIII CATG 6 cut(s) 34, 284, 290, 322, 328, 491
NlaIV GGNNCC 4 cut(s) 24, 213, 255, 367
NmuCI GTSAC 3 cut(s) 275, 461, 717
NsiI ATGCAT 1 cut(s) 559
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 1 cut(s) 286
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 389
PctI GAATGC 2 cut(s) 233, 518
PdiI GCCGGC 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 987
PfeI GAWTC 3 cut(s) 491, 609, 886
PflFI GACNNNGTC 1 cut(s) 397
PleI GAGTC 1 cut(s) 185
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 4 cut(s) 24, 213, 255, 367
PspPI GGNCC 1 cut(s) 365
PstNI CAGNNNCTG 1 cut(s) 359
PsuI RGATCY 2 cut(s) 167, 179
PsyI GACNNNGTC 1 cut(s) 397
RseI CAYNNNNRTG 3 cut(s) 285, 323, 957
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 417
Sau3AI GATC 7 cut(s) 167, 179, 403, 547, 638, 739, 973
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 3 cut(s) 160, 251, 373
SduI GDGCHC 4 cut(s) 247, 258, 383, 778
SetI ASST 7 cut(s) 24, 302, 453, 483, 657, 675, 692
SfaNI GCATC 3 cut(s) 566, 814, 949
SfcI CTRYAG 1 cut(s) 695
SfoI GGCGCC 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 206
SgrAI CRCCGGYG 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 3 cut(s) 285, 323, 957
SmlI CTYRAG 2 cut(s) 206, 890
SmoI CTYRAG 2 cut(s) 206, 890
Sse9I AATT 3 cut(s) 518, 585, 789
SsiI CCGC 9 cut(s) 90, 108, 163, 232, 348, 351, 357, 503, 722
SspDI GGCGCC 1 cut(s) 211
SspMI CTAG 1 cut(s) 737
StyD4I CCNGG 3 cut(s) 158, 249, 371
TaaI ACNGT 4 cut(s) 9, 275, 750, 773
TaqI TCGA 6 cut(s) 132, 144, 207, 294, 383, 392
TasI AATT 3 cut(s) 518, 585, 789
TauI GCSGC 6 cut(s) 93, 110, 234, 350, 353, 359
TfiI GAWTC 3 cut(s) 491, 609, 886
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 4 cut(s) 688, 717, 778, 846
TseFI GTSAC 3 cut(s) 275, 461, 717
Tsp45I GTSAC 3 cut(s) 275, 461, 717
TspDTI ATGAA 6 cut(s) 275, 307, 354, 444, 504, 914
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 4 cut(s) 688, 717, 778, 846
Tth111I GACNNNGTC 1 cut(s) 397
XbaI TCTAGA 1 cut(s) 736
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 2 cut(s) 132, 765
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 1 cut(s) 737
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.