Rh2DG358700
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006664
Physical Location & Seq
Forward (+)
50508720 .. 50512382
3663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG358700.1

Sequence Viewer

Length: 888 bp
ATGGCACAGTTACCCCCAAAGGTTCCAAACATGACCCCAAGTTGGCCGGACTTCAGCCACCAAAAGATGTCGTGTTTTGCACCCACCGGCGGCAACAACGGCAATGCCGCCTCCCAAAACCCTTGTTGGGTCGACGAGTTCCTCGACTTCTCGTCAGCCAGGCGGGGATCTCACAGGAGATCCGTCAGCGACTCCATCACATTTCTCGAGGCGCCAATGCAGCACGAATGCCGCGCCTCTGGAGCACCCCCGGAGCCCAACAACAACAGTCACCATGTTCATGAGTTCGATAGGTTTGACGATGAGCAGTTCATGTCCATGTTTACCACCGATGAAATCGCGGCCGCCGCCGCTGCCGGCCCCACCGGGTCGTGCTCGAACCCTTCGACGCCGTCGGATCACAACAGCATTAACGACGACGATGAACACCAGCAGCAGCAGCAGCTTGATGATGGTGACAAGAAGAAGCGAGAGCTGAAGCATGAATCTGAAGAGGCGGAGAGCGAATGCAAATTGGAGGCACAACAAACCCAGAATGGGGATCGCAATGCATCAAAAAACACAACCGGCGACAGAAAAATTGACCCAAAAAGGGTGAAGAGAATCTTGGCAAACAGACAATCTGCACAAAGATCACGGGTGAGGAAGCTGCAATACATTTCAGAGCTGGAACGCAGTGTTAGCTCTCTACAGGCCGAAGTTTCAGTGCTGTCACCGCGAGTTGCGTTTCTAGATCACCAACGGTTGCTTCTAAATGTAGACAACAGTGCTCTCAAACAAAGAATTGCAGCATTGGCTCAGGATAAGATTTTCAAAGATGGTAATTATTCTTTCCTTTTCTTTTGCCAATATGTGAAGCTTGCATTTTCTTTACTGCTTTTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009555 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0045893 GO:0045935 GO:0046907 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

295

Amino Acids

33.16

Weight (kDa)

5.94

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 195 - 242 1.2e-08 Basic region leucine zipper
bZIP_1 PF00170 197 - 241 5e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AccI GTMKAC 2 cut(s) 132, 759
AccII CGCG 3 cut(s) 234, 341, 718
AclWI GGATC 4 cut(s) 174, 175, 405, 549
AcoI YGGCCR 2 cut(s) 44, 342
AcuI CTGAAG 3 cut(s) 37, 497, 510
AcyI GRCGYC 2 cut(s) 212, 389
AfiI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 537, 538, 592
AgsI TTSAA 1 cut(s) 814
AhdI GACNNNNNGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 158
AjuI GAANNNNNNNTTGG 4 cut(s) 590, 622, 732, 764
AluBI AGCT 6 cut(s) 445, 475, 649, 667, 684, 859
AluI AGCT 6 cut(s) 445, 475, 649, 667, 684, 859
Alw21I GWGCWC 3 cut(s) 247, 377, 772
AlwI GGATC 4 cut(s) 174, 175, 405, 549
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 4 cut(s) 44, 342, 358, 693
ApeKI GCWGC 8 cut(s) 220, 353, 433, 436, 439, 442, 649, 788
AspLEI GCGC 2 cut(s) 214, 236
AspS9I GGNCC 1 cut(s) 359
AsuC2I CCSGG 2 cut(s) 251, 367
AsuHPI GGTGA 6 cut(s) 263, 467, 607, 652, 705, 728
AvaI CYCGRG 1 cut(s) 206
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 638, 670
Bbv12I GWGCWC 3 cut(s) 247, 377, 772
BbvI GCAGC 8 cut(s) 232, 340, 445, 448, 451, 454, 636, 800
BccI CCATC 3 cut(s) 203, 446, 812
BceAI ACGGC 2 cut(s) 115, 376
BciT130I CCWGG 1 cut(s) 160
BcnI CCSGG 2 cut(s) 251, 367
BfaI CTAG 1 cut(s) 731
BfmI CTRYAG 1 cut(s) 689
BfoI RGCGCY 1 cut(s) 215
Bme1390I CCNGG 3 cut(s) 160, 251, 367
BmeRI GACNNNNNGTC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 4 cut(s) 24, 213, 255, 361
BmrFI CCNGG 3 cut(s) 160, 251, 367
BmsI GCATC 1 cut(s) 560
BpmI CTGGAG 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 798
BpuMI CCSGG 2 cut(s) 251, 367
BsaHI GRCGYC 2 cut(s) 212, 389
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 6 cut(s) 42, 89, 127, 537, 538, 592
Bse118I RCCGGY 3 cut(s) 86, 356, 566
Bse3DI GCAATG 2 cut(s) 109, 553
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 249
BseLI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 537, 538, 592
BseMI GCAATG 2 cut(s) 109, 553
BseMII CTCAG 1 cut(s) 812
BseX3I CGGCCG 1 cut(s) 342
BseXI GCAGC 8 cut(s) 232, 340, 445, 448, 451, 454, 636, 800
BsgI GTGCAG 1 cut(s) 609
Bsh1236I CGCG 3 cut(s) 234, 341, 718
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 4 cut(s) 46, 344, 360, 695
BshNI GGYRCC 1 cut(s) 211
BsiEI CGRYCG 1 cut(s) 345
BsiHKAI GWGCWC 3 cut(s) 247, 377, 772
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 6 cut(s) 47, 87, 251, 357, 366, 567
BslI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 537, 538, 592
BsmI GAATGC 2 cut(s) 233, 512
BsnI GGCC 4 cut(s) 46, 344, 360, 695
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 4 cut(s) 247, 258, 377, 772
Bsp143I GATC 6 cut(s) 167, 179, 397, 541, 632, 733
BspANI GGCC 4 cut(s) 46, 344, 360, 695
BspCNI CTCAG 1 cut(s) 811
BspFNI CGCG 3 cut(s) 234, 341, 718
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 4 cut(s) 24, 213, 255, 361
BspPI GGATC 4 cut(s) 174, 175, 405, 549
BspT107I GGYRCC 1 cut(s) 211
BsrDI GCAATG 2 cut(s) 109, 553
BsrFI RCCGGY 3 cut(s) 86, 356, 566
BssAI RCCGGY 3 cut(s) 86, 356, 566
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 6 cut(s) 167, 179, 397, 541, 632, 733
BssNI GRCGYC 2 cut(s) 212, 389
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 4 cut(s) 9, 269, 744, 767
Bst6I CTCTTC 2 cut(s) 486, 593
BstACI GRCGYC 2 cut(s) 212, 389
BstC8I GCNNGC 2 cut(s) 358, 861
BstDEI CTNAG 1 cut(s) 798
BstFNI CGCG 3 cut(s) 234, 341, 718
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 2 cut(s) 214, 236
BstKTI GATC 6 cut(s) 170, 182, 400, 544, 635, 736
BstMBI GATC 6 cut(s) 167, 179, 397, 541, 632, 733
BstMCI CGRYCG 1 cut(s) 345
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 3 cut(s) 158, 249, 365
BstSFI CTRYAG 1 cut(s) 689
BstUI CGCG 3 cut(s) 234, 341, 718
BstV1I GCAGC 8 cut(s) 232, 340, 445, 448, 451, 454, 636, 800
BstX2I RGATCY 2 cut(s) 167, 179
BstYI RGATCY 2 cut(s) 167, 179
BstZI CGGCCG 1 cut(s) 342
BsuRI GGCC 4 cut(s) 46, 344, 360, 695
BtsI GCAGTG 1 cut(s) 682
BtsIMutI CAGTG 3 cut(s) 682, 711, 772
Cac8I GCNNGC 2 cut(s) 358, 861
CciI TCATGA 1 cut(s) 280
CciNI GCGGCCGC 1 cut(s) 342
CfoI GCGC 2 cut(s) 214, 236
Cfr10I RCCGGY 3 cut(s) 86, 356, 566
Cfr13I GGNCC 1 cut(s) 359
CseI GACGC 1 cut(s) 397
CviAII CATG 6 cut(s) 31, 275, 281, 313, 319, 482
DdeI CTNAG 1 cut(s) 798
DinI GGCGCC 1 cut(s) 213
DpnI GATC 6 cut(s) 169, 181, 399, 543, 634, 735
DpnII GATC 6 cut(s) 167, 179, 397, 541, 632, 733
DriI GACNNNNNGTC 1 cut(s) 151
EaeI YGGCCR 2 cut(s) 44, 342
EagI CGGCCG 1 cut(s) 342
Eam1104I CTCTTC 2 cut(s) 486, 593
Eam1105I GACNNNNNGTC 1 cut(s) 151
EarI CTCTTC 2 cut(s) 486, 593
EciI GGCGGA 1 cut(s) 512
EclXI CGGCCG 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 258
Eco52I CGGCCG 1 cut(s) 342
Eco57I CTGAAG 3 cut(s) 37, 497, 510
Eco88I CYCGRG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 258
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
FaeI CATG 6 cut(s) 34, 278, 284, 316, 322, 485
FaiI YATR 7 cut(s) 32, 276, 282, 314, 320, 483, 852
FalI AAGNNNNNCTT 2 cut(s) 590, 622
FatI CATG 6 cut(s) 30, 274, 280, 312, 318, 481
FauI CCCGC 1 cut(s) 156
FblI GTMKAC 2 cut(s) 132, 759
FriOI GRGCYC 1 cut(s) 258
FspBI CTAG 1 cut(s) 731
GlaI GCGC 2 cut(s) 213, 235
GsuI CTGGAG 1 cut(s) 261
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 4 cut(s) 46, 344, 360, 695
HapII CCGG 6 cut(s) 47, 87, 251, 357, 366, 567
HgaI GACGC 1 cut(s) 397
HhaI GCGC 2 cut(s) 214, 236
Hin1I GRCGYC 2 cut(s) 212, 389
Hin1II CATG 6 cut(s) 34, 278, 284, 316, 322, 485
Hin6I GCGC 2 cut(s) 212, 234
HinP1I GCGC 2 cut(s) 212, 234
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 3 cut(s) 191, 485, 603
HpaII CCGG 6 cut(s) 47, 87, 251, 357, 366, 567
HphI GGTGA 6 cut(s) 263, 467, 607, 652, 705, 728
Hpy166II GTNNAC 3 cut(s) 133, 324, 760
Hpy188I TCNGA 3 cut(s) 397, 490, 664
Hpy188III TCNNGA 5 cut(s) 206, 240, 281, 731, 800
Hpy8I GTNNAC 3 cut(s) 133, 324, 760
Hpy99I CGWCG 5 cut(s) 137, 391, 397, 419, 422
HpyAV CCTTC 1 cut(s) 393
HpyCH4III ACNGT 4 cut(s) 9, 269, 744, 767
HpyCH4V TGCA 8 cut(s) 80, 220, 510, 551, 626, 652, 788, 863
HpyF3I CTNAG 1 cut(s) 798
Hsp92I GRCGYC 2 cut(s) 212, 389
Hsp92II CATG 6 cut(s) 34, 278, 284, 316, 322, 485
HspAI GCGC 2 cut(s) 212, 234
KasI GGCGCC 1 cut(s) 211
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Kzo9I GATC 6 cut(s) 167, 179, 397, 541, 632, 733
LmnI GCTCC 2 cut(s) 242, 253
Lsp1109I GCAGC 8 cut(s) 232, 340, 445, 448, 451, 454, 636, 800
LweI GCATC 1 cut(s) 560
MaeI CTAG 1 cut(s) 731
MaeIII GTNAC 4 cut(s) 9, 269, 455, 711
MalI GATC 6 cut(s) 169, 181, 399, 543, 634, 735
MboI GATC 6 cut(s) 167, 179, 397, 541, 632, 733
MboII GAAGA 3 cut(s) 475, 503, 610
MflI RGATCY 2 cut(s) 167, 179
MhlI GDGCHC 4 cut(s) 247, 258, 377, 772
MluCI AATT 4 cut(s) 512, 579, 783, 823
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 7 cut(s) 121, 152, 202, 247, 487, 511, 636
Mph1103I ATGCAT 1 cut(s) 553
MroNI GCCGGC 1 cut(s) 356
MseI TTAA 2 cut(s) 411, 886
MslI CAYNNNNRTG 2 cut(s) 279, 317
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 6 cut(s) 47, 87, 251, 357, 366, 567
MspR9I CCNGG 3 cut(s) 160, 251, 367
Mva1269I GAATGC 2 cut(s) 233, 512
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 3 cut(s) 234, 341, 718
NaeI GCCGGC 1 cut(s) 358
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 2 cut(s) 251, 367
NdeII GATC 6 cut(s) 167, 179, 397, 541, 632, 733
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 6 cut(s) 34, 278, 284, 316, 322, 485
NlaIV GGNNCC 4 cut(s) 24, 213, 255, 361
NmuCI GTSAC 3 cut(s) 269, 455, 711
NotI GCGGCCGC 1 cut(s) 342
NsiI ATGCAT 1 cut(s) 553
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 1 cut(s) 280
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 383
PctI GAATGC 2 cut(s) 233, 512
PdiI GCCGGC 1 cut(s) 358
PfeI GAWTC 2 cut(s) 485, 603
PflFI GACNNNGTC 1 cut(s) 391
PleI GAGTC 1 cut(s) 185
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 4 cut(s) 24, 213, 255, 361
PspPI GGNCC 1 cut(s) 359
PsuI RGATCY 2 cut(s) 167, 179
PsyI GACNNNGTC 1 cut(s) 391
RseI CAYNNNNRTG 2 cut(s) 279, 317
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 411, 886
Sau3AI GATC 6 cut(s) 167, 179, 397, 541, 632, 733
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 3 cut(s) 160, 251, 367
SduI GDGCHC 4 cut(s) 247, 258, 377, 772
SetI ASST 8 cut(s) 24, 296, 447, 477, 651, 669, 686, 861
SfaNI GCATC 1 cut(s) 560
SfcI CTRYAG 1 cut(s) 689
SfoI GGCGCC 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 206
SgrAI CRCCGGYG 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 2 cut(s) 279, 317
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 4 cut(s) 512, 579, 783, 823
SspDI GGCGCC 1 cut(s) 211
SspMI CTAG 1 cut(s) 731
StyD4I CCNGG 3 cut(s) 158, 249, 365
TaaI ACNGT 4 cut(s) 9, 269, 744, 767
TaqI TCGA 6 cut(s) 132, 144, 207, 288, 377, 386
TasI AATT 4 cut(s) 512, 579, 783, 823
TauI GCSGC 7 cut(s) 93, 110, 234, 344, 347, 350, 353
TfiI GAWTC 2 cut(s) 485, 603
Tru1I TTAA 2 cut(s) 411, 886
Tru9I TTAA 2 cut(s) 411, 886
TscAI CASTG 3 cut(s) 682, 711, 772
TseFI GTSAC 3 cut(s) 269, 455, 711
TseI GCWGC 8 cut(s) 220, 353, 433, 436, 439, 442, 649, 788
Tsp45I GTSAC 3 cut(s) 269, 455, 711
TspDTI ATGAA 5 cut(s) 269, 301, 348, 438, 498
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 3 cut(s) 682, 711, 772
Tth111I GACNNNGTC 1 cut(s) 391
XbaI TCTAGA 1 cut(s) 730
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 2 cut(s) 132, 759
XspI CTAG 1 cut(s) 731
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.