transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42380 AT2G42380 AT2G42380 AT2G42380 AT2G42380 AT3G58120 AT3G58120 |
| fragaria_vesca | FvH4_6g26970 FvH4_6g26970 FvH4_6g26970 FvH4_6g26970 |
| malus_domestica | MD09G1240900.v1.1 MD17G1233900.v1.1 |
| prunus_persica | Prupe.3G125500_v2.0.a1 |
| pyrus_communis | pycom09g15970 pycom17g23720 |
| rosa_chinensis | RchiOBHm_Chr2g0128811 |
| rosa_laevigata | RLG00000019026 |
| rosa_multiflora | Rmu_sc0007061.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00115250 |
| rosa_rugosa | Rorug02G0281200 |
| rosa_samantha | Rh2AG334000 Rh2BG342000 Rh2CG320900 Rh2DG358700 |
| rosa_wichuraiana | Rw2G026990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 205 |
| AccI | GTMKAC | 2 cut(s) | 126, 738 |
| AccII | CGCG | 3 cut(s) | 228, 335, 697 |
| AciI | CCGC | 7 cut(s) | 157, 226, 330, 333, 335, 342, 695 |
| AclWI | GGATC | 2 cut(s) | 168, 393 |
| AcoI | YGGCCR | 2 cut(s) | 44, 150 |
| AcuI | CTGAAG | 3 cut(s) | 485, 498, 836 |
| AcyI | GRCGYC | 2 cut(s) | 206, 377 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 42, 121, 159, 526, 571 |
| AflIII | ACRYGT | 1 cut(s) | 265 |
| AgsI | TTSAA | 2 cut(s) | 793, 899 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 145 |
| AjnI | CCWGG | 1 cut(s) | 152 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 569, 601, 711, 743 |
| AluBI | AGCT | 4 cut(s) | 463, 628, 646, 950 |
| AluI | AGCT | 4 cut(s) | 463, 628, 646, 950 |
| Alw21I | GWGCWC | 3 cut(s) | 241, 365, 751 |
| Alw26I | GTCTC | 2 cut(s) | 235, 826 |
| Alw44I | GTGCAC | 1 cut(s) | 237 |
| AlwI | GGATC | 2 cut(s) | 168, 393 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 953 |
| AoxI | GGCC | 4 cut(s) | 44, 150, 346, 672 |
| ApaLI | GTGCAC | 1 cut(s) | 237 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 213, 245 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 969 |
| AspLEI | GCGC | 3 cut(s) | 7, 91, 208 |
| AspS9I | GGNCC | 2 cut(s) | 162, 347 |
| AsuC2I | CCSGG | 2 cut(s) | 245, 355 |
| AsuHPI | GGTGA | 7 cut(s) | 304, 443, 586, 631, 684, 842, 897 |
| AvaII | GGWCC | 1 cut(s) | 162 |
| BaeGI | GKGCMC | 1 cut(s) | 241 |
| BanI | GGYRCC | 1 cut(s) | 205 |
| BanII | GRGCYC | 1 cut(s) | 252 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 617, 649 |
| Bbv12I | GWGCWC | 3 cut(s) | 241, 365, 751 |
| BccI | CCATC | 3 cut(s) | 197, 422, 865 |
| BceAI | ACGGC | 2 cut(s) | 112, 364 |
| BciT130I | CCWGG | 1 cut(s) | 154 |
| BclI | TGATCA | 2 cut(s) | 433, 955 |
| BcnI | CCSGG | 2 cut(s) | 245, 355 |
| BcoDI | GTCTC | 2 cut(s) | 235, 826 |
| BfaI | CTAG | 1 cut(s) | 710 |
| BfmI | CTRYAG | 2 cut(s) | 668, 945 |
| BfoI | RGCGCY | 1 cut(s) | 209 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 335 |
| Bme1390I | CCNGG | 3 cut(s) | 154, 245, 355 |
| Bme18I | GGWCC | 1 cut(s) | 162 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 145 |
| BmgT120I | GGNCC | 2 cut(s) | 162, 347 |
| BmiI | GGNNCC | 6 cut(s) | 24, 163, 164, 207, 249, 349 |
| BmrFI | CCNGG | 3 cut(s) | 154, 245, 355 |
| BmsI | GCATC | 2 cut(s) | 787, 931 |
| Bpu10I | CCTNAGC | 1 cut(s) | 777 |
| BpuEI | CTTGAG | 3 cut(s) | 73, 221, 848 |
| BpuMI | CCSGG | 2 cut(s) | 245, 355 |
| BsaBI | GATNNNNATC | 2 cut(s) | 432, 801 |
| BsaHI | GRCGYC | 2 cut(s) | 206, 377 |
| BsaJI | CCNNGG | 2 cut(s) | 243, 333 |
| BsaWI | WCCGGW | 2 cut(s) | 168, 233 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 42, 121, 159, 526, 571 |
| Bse118I | RCCGGY | 3 cut(s) | 104, 344, 545 |
| Bse1I | ACTGG | 1 cut(s) | 47 |
| Bse3DI | GCAATG | 1 cut(s) | 106 |
| Bse8I | GATNNNNATC | 2 cut(s) | 432, 801 |
| BseBI | CCWGG | 1 cut(s) | 154 |
| BseDI | CCNNGG | 2 cut(s) | 243, 333 |
| BseJI | GATNNNNATC | 2 cut(s) | 432, 801 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 42, 121, 159, 526, 571 |
| BseMI | GCAATG | 1 cut(s) | 106 |
| BseMII | CTCAG | 2 cut(s) | 791, 827 |
| BseNI | ACTGG | 1 cut(s) | 47 |
| BseSI | GKGCMC | 1 cut(s) | 241 |
| BsgI | GTGCAG | 1 cut(s) | 588 |
| Bsh1236I | CGCG | 3 cut(s) | 228, 335, 697 |
| BshFI | GGCC | 4 cut(s) | 46, 152, 348, 674 |
| BshNI | GGYRCC | 1 cut(s) | 205 |
| BsiHKAI | GWGCWC | 3 cut(s) | 241, 365, 751 |
| BsiSI | CCGG | 8 cut(s) | 47, 105, 169, 234, 245, 345, 354, 546 |
| BslFI | GGGAC | 1 cut(s) | 148 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 42, 121, 159, 526, 571 |
| BsmAI | GTCTC | 2 cut(s) | 235, 826 |
| BsmBI | CGTCTC | 1 cut(s) | 235 |
| BsmFI | GGGAC | 1 cut(s) | 148 |
| BsmI | GAATGC | 2 cut(s) | 227, 500 |
| BsnI | GGCC | 4 cut(s) | 46, 152, 348, 674 |
| Bsp1286I | GDGCHC | 4 cut(s) | 241, 252, 365, 751 |
| Bsp143I | GATC | 5 cut(s) | 173, 385, 433, 611, 955 |
| BspACI | CCGC | 7 cut(s) | 157, 226, 330, 333, 335, 342, 695 |
| BspANI | GGCC | 4 cut(s) | 46, 152, 348, 674 |
| BspCNI | CTCAG | 2 cut(s) | 790, 828 |
| BspFNI | CGCG | 3 cut(s) | 228, 335, 697 |
| BspLI | GGNNCC | 6 cut(s) | 24, 163, 164, 207, 249, 349 |
| BspMAI | CTGCAG | 1 cut(s) | 949 |
| BspPI | GGATC | 2 cut(s) | 168, 393 |
| BspT107I | GGYRCC | 1 cut(s) | 205 |
| BsrDI | GCAATG | 1 cut(s) | 106 |
| BsrFI | RCCGGY | 3 cut(s) | 104, 344, 545 |
| BsrI | ACTGG | 1 cut(s) | 47 |
| BssAI | RCCGGY | 3 cut(s) | 104, 344, 545 |
| BssECI | CCNNGG | 2 cut(s) | 243, 333 |
| BssMI | GATC | 5 cut(s) | 173, 385, 433, 611, 955 |
| BssNI | GRCGYC | 2 cut(s) | 206, 377 |
| Bst2UI | CCWGG | 1 cut(s) | 154 |
| Bst4CI | ACNGT | 1 cut(s) | 723 |
| Bst6I | CTCTTC | 3 cut(s) | 474, 572, 812 |
| BstACI | GRCGYC | 2 cut(s) | 206, 377 |
| BstC8I | GCNNGC | 2 cut(s) | 106, 346 |
| BstDEI | CTNAG | 2 cut(s) | 777, 836 |
| BstDSI | CCRYGG | 1 cut(s) | 333 |
| BstFNI | CGCG | 3 cut(s) | 228, 335, 697 |
| BstH2I | RGCGCY | 1 cut(s) | 209 |
| BstHHI | GCGC | 3 cut(s) | 7, 91, 208 |
| BstKTI | GATC | 5 cut(s) | 176, 388, 436, 614, 958 |
| BstMAI | GTCTC | 2 cut(s) | 235, 826 |
| BstMBI | GATC | 5 cut(s) | 173, 385, 433, 611, 955 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 105, 335, 338, 341, 694, 773, 950 |
| BstNI | CCWGG | 1 cut(s) | 154 |
| BstNSI | RCATGY | 1 cut(s) | 269 |
| BstSCI | CCNGG | 3 cut(s) | 152, 243, 353 |
| BstSFI | CTRYAG | 2 cut(s) | 668, 945 |
| BstSLI | GKGCMC | 1 cut(s) | 241 |
| BstUI | CGCG | 3 cut(s) | 228, 335, 697 |
| BstX2I | RGATCY | 1 cut(s) | 173 |
| BstYI | RGATCY | 1 cut(s) | 173 |
| BsuRI | GGCC | 4 cut(s) | 46, 152, 348, 674 |
| BtgI | CCRYGG | 1 cut(s) | 333 |
| BtsI | GCAGTG | 1 cut(s) | 661 |
| BtsIMutI | CAGTG | 3 cut(s) | 661, 690, 812 |
| Cac8I | GCNNGC | 2 cut(s) | 106, 346 |
| CaiI | CAGNNNCTG | 1 cut(s) | 953 |
| CfoI | GCGC | 3 cut(s) | 7, 91, 208 |
| Cfr10I | RCCGGY | 3 cut(s) | 104, 344, 545 |
| Cfr13I | GGNCC | 2 cut(s) | 162, 347 |
| Cfr42I | CCGCGG | 1 cut(s) | 336 |
| CseI | GACGC | 2 cut(s) | 217, 385 |
| CviAII | CATG | 5 cut(s) | 31, 266, 301, 307, 470 |
| DdeI | CTNAG | 2 cut(s) | 777, 836 |
| DinI | GGCGCC | 1 cut(s) | 207 |
| DpnI | GATC | 5 cut(s) | 175, 387, 435, 613, 957 |
| DpnII | GATC | 5 cut(s) | 173, 385, 433, 611, 955 |
| DriI | GACNNNNNGTC | 1 cut(s) | 145 |
| EaeI | YGGCCR | 2 cut(s) | 44, 150 |
| Eam1104I | CTCTTC | 3 cut(s) | 474, 572, 812 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 145 |
| EarI | CTCTTC | 3 cut(s) | 474, 572, 812 |
| Eco24I | GRGCYC | 1 cut(s) | 252 |
| Eco47I | GGWCC | 1 cut(s) | 162 |
| Eco57I | CTGAAG | 3 cut(s) | 485, 498, 836 |
| EcoO109I | RGGNCCY | 1 cut(s) | 162 |
| EcoRII | CCWGG | 1 cut(s) | 152 |
| EcoT38I | GRGCYC | 1 cut(s) | 252 |
| EgeI | GGCGCC | 1 cut(s) | 207 |
| EheI | GGCGCC | 1 cut(s) | 207 |
| Esp3I | CGTCTC | 1 cut(s) | 235 |
| FaeI | CATG | 5 cut(s) | 34, 269, 304, 310, 473 |
| FaiI | YATR | 6 cut(s) | 32, 267, 302, 308, 471, 923 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 569, 601, 954, 986 |
| FaqI | GGGAC | 1 cut(s) | 148 |
| FatI | CATG | 5 cut(s) | 30, 265, 300, 306, 469 |
| FauI | CCCGC | 1 cut(s) | 150 |
| FbaI | TGATCA | 2 cut(s) | 433, 955 |
| FblI | GTMKAC | 2 cut(s) | 126, 738 |
| FriOI | GRGCYC | 1 cut(s) | 252 |
| FspBI | CTAG | 1 cut(s) | 710 |
| GlaI | GCGC | 3 cut(s) | 6, 90, 207 |
| HaeII | RGCGCY | 1 cut(s) | 209 |
| HaeIII | GGCC | 4 cut(s) | 46, 152, 348, 674 |
| HapII | CCGG | 8 cut(s) | 47, 105, 169, 234, 245, 345, 354, 546 |
| HgaI | GACGC | 2 cut(s) | 217, 385 |
| HhaI | GCGC | 3 cut(s) | 7, 91, 208 |
| Hin1I | GRCGYC | 2 cut(s) | 206, 377 |
| Hin1II | CATG | 5 cut(s) | 34, 269, 304, 310, 473 |
| Hin6I | GCGC | 3 cut(s) | 5, 89, 206 |
| HinP1I | GCGC | 3 cut(s) | 5, 89, 206 |
| HincII | GTYRAC | 2 cut(s) | 127, 512 |
| HindII | GTYRAC | 2 cut(s) | 127, 512 |
| HinfI | GANTC | 4 cut(s) | 185, 473, 582, 859 |
| HpaII | CCGG | 8 cut(s) | 47, 105, 169, 234, 245, 345, 354, 546 |
| HphI | GGTGA | 7 cut(s) | 304, 443, 586, 631, 684, 842, 897 |
| Hpy166II | GTNNAC | 5 cut(s) | 127, 239, 312, 512, 739 |
| Hpy188I | TCNGA | 6 cut(s) | 385, 438, 478, 643, 916, 960 |
| Hpy188III | TCNNGA | 7 cut(s) | 200, 710, 779, 806, 865, 938, 987 |
| Hpy8I | GTNNAC | 5 cut(s) | 127, 239, 312, 512, 739 |
| Hpy99I | CGWCG | 7 cut(s) | 79, 131, 151, 379, 385, 407, 410 |
| HpyAV | CCTTC | 1 cut(s) | 381 |
| HpyCH4III | ACNGT | 1 cut(s) | 723 |
| HpyCH4V | TGCA | 8 cut(s) | 214, 239, 498, 605, 631, 704, 767, 947 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 105, 335, 338, 341, 694, 773, 950 |
| HpyF3I | CTNAG | 2 cut(s) | 777, 836 |
| Hsp92I | GRCGYC | 2 cut(s) | 206, 377 |
| Hsp92II | CATG | 5 cut(s) | 34, 269, 304, 310, 473 |
| HspAI | GCGC | 3 cut(s) | 5, 89, 206 |
| KasI | GGCGCC | 1 cut(s) | 205 |
| KflI | GGGWCCC | 1 cut(s) | 162 |
| KroI | GCCGGC | 2 cut(s) | 104, 344 |
| KroNI | GCCGGC | 2 cut(s) | 106, 346 |
| Ksp22I | TGATCA | 2 cut(s) | 433, 955 |
| KspI | CCGCGG | 1 cut(s) | 336 |
| Kzo9I | GATC | 5 cut(s) | 173, 385, 433, 611, 955 |
| LmnI | GCTCC | 1 cut(s) | 247 |
| LweI | GCATC | 2 cut(s) | 787, 931 |
| MaeI | CTAG | 1 cut(s) | 710 |
| MaeIII | GTNAC | 3 cut(s) | 9, 658, 690 |
| MalI | GATC | 5 cut(s) | 175, 387, 435, 613, 957 |
| MboI | GATC | 5 cut(s) | 173, 385, 433, 611, 955 |
| MboII | GAAGA | 8 cut(s) | 451, 454, 457, 491, 589, 829, 880, 975 |
| MflI | RGATCY | 1 cut(s) | 173 |
| MhlI | GDGCHC | 4 cut(s) | 241, 252, 365, 751 |
| MluCI | AATT | 3 cut(s) | 500, 558, 762 |
| Mly113I | GGCGCC | 1 cut(s) | 206 |
| MlyI | GAGTC | 1 cut(s) | 179 |
| MmeI | TCCRAC | 1 cut(s) | 363 |
| MroNI | GCCGGC | 2 cut(s) | 104, 344 |
| MroXI | GAANNNNTTC | 1 cut(s) | 969 |
| MseI | TTAA | 1 cut(s) | 399 |
| MslI | CAYNNNNRTG | 1 cut(s) | 305 |
| MspA1I | CMGCKG | 2 cut(s) | 335, 950 |
| MspI | CCGG | 8 cut(s) | 47, 105, 169, 234, 245, 345, 354, 546 |
| MspR9I | CCNGG | 3 cut(s) | 154, 245, 355 |
| Mva1269I | GAATGC | 2 cut(s) | 227, 500 |
| MvaI | CCWGG | 1 cut(s) | 154 |
| MvnI | CGCG | 3 cut(s) | 228, 335, 697 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 105, 335, 338, 341, 694, 773, 950 |
| NaeI | GCCGGC | 2 cut(s) | 106, 346 |
| NarI | GGCGCC | 1 cut(s) | 206 |
| NciI | CCSGG | 2 cut(s) | 245, 355 |
| NdeII | GATC | 5 cut(s) | 173, 385, 433, 611, 955 |
| NgoMIV | GCCGGC | 2 cut(s) | 104, 344 |
| NlaIII | CATG | 5 cut(s) | 34, 269, 304, 310, 473 |
| NlaIV | GGNNCC | 6 cut(s) | 24, 163, 164, 207, 249, 349 |
| NmuCI | GTSAC | 1 cut(s) | 690 |
| NspI | RCATGY | 1 cut(s) | 269 |
| PciI | ACATGT | 1 cut(s) | 265 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 135, 225, 371 |
| PctI | GAATGC | 2 cut(s) | 227, 500 |
| PdiI | GCCGGC | 2 cut(s) | 106, 346 |
| PdmI | GAANNNNTTC | 1 cut(s) | 969 |
| PfeI | GAWTC | 3 cut(s) | 473, 582, 859 |
| PflFI | GACNNNGTC | 1 cut(s) | 379 |
| PleI | GAGTC | 1 cut(s) | 179 |
| PluTI | GGCGCC | 1 cut(s) | 209 |
| PpsI | GAGTC | 1 cut(s) | 179 |
| PpuMI | RGGWCCY | 1 cut(s) | 162 |
| PscI | ACATGT | 1 cut(s) | 265 |
| Psp5II | RGGWCCY | 1 cut(s) | 162 |
| Psp6I | CCWGG | 1 cut(s) | 152 |
| PspGI | CCWGG | 1 cut(s) | 152 |
| PspN4I | GGNNCC | 6 cut(s) | 24, 163, 164, 207, 249, 349 |
| PspPI | GGNCC | 2 cut(s) | 162, 347 |
| PspPPI | RGGWCCY | 1 cut(s) | 162 |
| PstI | CTGCAG | 1 cut(s) | 949 |
| PstNI | CAGNNNCTG | 1 cut(s) | 953 |
| PsuI | RGATCY | 1 cut(s) | 173 |
| PsyI | GACNNNGTC | 1 cut(s) | 379 |
| PvuII | CAGCTG | 1 cut(s) | 950 |
| RseI | CAYNNNNRTG | 1 cut(s) | 305 |
| SacII | CCGCGG | 1 cut(s) | 336 |
| SalI | GTCGAC | 1 cut(s) | 125 |
| SaqAI | TTAA | 1 cut(s) | 399 |
| Sau3AI | GATC | 5 cut(s) | 173, 385, 433, 611, 955 |
| Sau96I | GGNCC | 2 cut(s) | 162, 347 |
| SchI | GAGTC | 1 cut(s) | 179 |
| ScrFI | CCNGG | 3 cut(s) | 154, 245, 355 |
| SduI | GDGCHC | 4 cut(s) | 241, 252, 365, 751 |
| SetI | ASST | 8 cut(s) | 16, 24, 284, 465, 630, 648, 665, 952 |
| SfaNI | GCATC | 2 cut(s) | 787, 931 |
| SfcI | CTRYAG | 2 cut(s) | 668, 945 |
| SfoI | GGCGCC | 1 cut(s) | 207 |
| Sfr303I | CCGCGG | 1 cut(s) | 336 |
| SgrAI | CRCCGGYG | 1 cut(s) | 545 |
| SgrBI | CCGCGG | 1 cut(s) | 336 |
| SinI | GGWCC | 1 cut(s) | 162 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 305 |
| SmlI | CTYRAG | 3 cut(s) | 52, 200, 863 |
| SmoI | CTYRAG | 3 cut(s) | 52, 200, 863 |
| Sse9I | AATT | 3 cut(s) | 500, 558, 762 |
| SsiI | CCGC | 7 cut(s) | 157, 226, 330, 333, 335, 342, 695 |
| SspDI | GGCGCC | 1 cut(s) | 205 |
| SspMI | CTAG | 1 cut(s) | 710 |
| StyD4I | CCNGG | 3 cut(s) | 152, 243, 353 |
| TaaI | ACNGT | 1 cut(s) | 723 |
| TaqI | TCGA | 5 cut(s) | 126, 138, 262, 365, 374 |
| TasI | AATT | 3 cut(s) | 500, 558, 762 |
| TauI | GCSGC | 5 cut(s) | 228, 332, 335, 338, 344 |
| TfiI | GAWTC | 3 cut(s) | 473, 582, 859 |
| Tru1I | TTAA | 1 cut(s) | 399 |
| Tru9I | TTAA | 1 cut(s) | 399 |
| TscAI | CASTG | 3 cut(s) | 661, 690, 819 |
| TseFI | GTSAC | 1 cut(s) | 690 |
| Tsp45I | GTSAC | 1 cut(s) | 690 |
| TspDTI | ATGAA | 3 cut(s) | 289, 336, 486 |
| TspGWI | ACGGA | 1 cut(s) | 166 |
| TspRI | CASTG | 3 cut(s) | 661, 690, 819 |
| Tth111I | GACNNNGTC | 1 cut(s) | 379 |
| VneI | GTGCAC | 1 cut(s) | 237 |
| VpaK11BI | GGWCC | 1 cut(s) | 162 |
| XbaI | TCTAGA | 1 cut(s) | 709 |
| XceI | RCATGY | 1 cut(s) | 269 |
| XmiI | GTMKAC | 2 cut(s) | 126, 738 |
| XmnI | GAANNNNTTC | 1 cut(s) | 969 |
| XspI | CTAG | 1 cut(s) | 710 |