FvH4_6g26970
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
20639456 .. 20642909
3454 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26970.t2

Sequence Viewer

Length: 990 bp
ATGGCGCAGTTACCTCCAAAGGTTCCCAACATGACCCCAAACTGGCCGGACTTGAGCCACCACCACAAGATGTCGTCGTGTTTTGCTGCGCCGAACGGCAATGCCGGCAGCAACCCTTGTTGGGTCGACGAGTTCCTCGACTTCTCGTCGGCCAGGCGGGGGTCCCACCGGAGATCCGTCAGCGACTCCATCACATTTCTTGAGGCGCCAATGCAGGACGAATGCCGCGTCTCCGGTGCACCCCCGGAGCCCAACACCACTCGACATGTTGAGTTTGACAGGTTTGACGATGAGCAGTTCATGTCCATGTTCACCACCGATGAAATCGCCGCCGCGGCTGCCGCCGGCCCCACCGGGTCGTGCTCGAACCCTTCGACGCCGTCGGATCACAACAGCATTAACGACGACGAGCAGCAGCAGATTGATGATGGTGATCAGAAGAAGAAGAAGCGAGATAATAAGCTGAAGCATGAATCTGAAGAGGCAGAGAGCGAATGCAAATTGGAGGGTCAACAAAACCAGAATGGGGATAACAAAAACACCACCGGCGACAGAAAAATTGACCCCAAAAGGGTGAAGAGAATCTTGGCAAACAGACAATCTGCACAAAGATCACGGGTGAGGAAGCTGCAATACATTTCAGAGCTGGAACGCAGTGTTACCTCTCTACAGGCCGAAGTTTCAGTGCTGTCACCGCGAGTTGCATTTCTAGACCACCAACGGTTGCTTCTAAATGTAGACAATAGTGCTCTCAAACAAAGAATTGCAGCATTGGCTCAGGATAAGATTTTCAAAGATGCTCATCAAGAAGCACTGAAGAGGGAAATAGAGAGACTGAGGCAAGTGTATCACCAACAGAATCTCAAGAAGATGGAGGACAACAACAACAACAACATTGAACAATCACCAAACTCGGACACCATAACTACTCAACTTCCTGATGCTGCAGCTGCTGATCAGAAAGAACAACTTCTCAATGTTTCTTCCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

330

Amino Acids

37.03

Weight (kDa)

5.85

Isoelectric Point (pI)

60.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 178 - 225 1.3e-08 Basic region leucine zipper
bZIP_1 PF00170 180 - 223 4.3e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 205
AccI GTMKAC 2 cut(s) 126, 738
AccII CGCG 3 cut(s) 228, 335, 697
AciI CCGC 7 cut(s) 157, 226, 330, 333, 335, 342, 695
AclWI GGATC 2 cut(s) 168, 393
AcoI YGGCCR 2 cut(s) 44, 150
AcuI CTGAAG 3 cut(s) 485, 498, 836
AcyI GRCGYC 2 cut(s) 206, 377
AfiI CCNNNNNNNGG 5 cut(s) 42, 121, 159, 526, 571
AflIII ACRYGT 1 cut(s) 265
AgsI TTSAA 2 cut(s) 793, 899
AhdI GACNNNNNGTC 1 cut(s) 145
AjnI CCWGG 1 cut(s) 152
AjuI GAANNNNNNNTTGG 4 cut(s) 569, 601, 711, 743
AluBI AGCT 4 cut(s) 463, 628, 646, 950
AluI AGCT 4 cut(s) 463, 628, 646, 950
Alw21I GWGCWC 3 cut(s) 241, 365, 751
Alw26I GTCTC 2 cut(s) 235, 826
Alw44I GTGCAC 1 cut(s) 237
AlwI GGATC 2 cut(s) 168, 393
AlwNI CAGNNNCTG 1 cut(s) 953
AoxI GGCC 4 cut(s) 44, 150, 346, 672
ApaLI GTGCAC 1 cut(s) 237
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
Asp700I GAANNNNTTC 1 cut(s) 969
AspLEI GCGC 3 cut(s) 7, 91, 208
AspS9I GGNCC 2 cut(s) 162, 347
AsuC2I CCSGG 2 cut(s) 245, 355
AsuHPI GGTGA 7 cut(s) 304, 443, 586, 631, 684, 842, 897
AvaII GGWCC 1 cut(s) 162
BaeGI GKGCMC 1 cut(s) 241
BanI GGYRCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 252
BarI GAAGNNNNNNTAC 2 cut(s) 617, 649
Bbv12I GWGCWC 3 cut(s) 241, 365, 751
BccI CCATC 3 cut(s) 197, 422, 865
BceAI ACGGC 2 cut(s) 112, 364
BciT130I CCWGG 1 cut(s) 154
BclI TGATCA 2 cut(s) 433, 955
BcnI CCSGG 2 cut(s) 245, 355
BcoDI GTCTC 2 cut(s) 235, 826
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 2 cut(s) 668, 945
BfoI RGCGCY 1 cut(s) 209
BglI GCCNNNNNGGC 1 cut(s) 335
Bme1390I CCNGG 3 cut(s) 154, 245, 355
Bme18I GGWCC 1 cut(s) 162
BmeRI GACNNNNNGTC 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 162, 347
BmiI GGNNCC 6 cut(s) 24, 163, 164, 207, 249, 349
BmrFI CCNGG 3 cut(s) 154, 245, 355
BmsI GCATC 2 cut(s) 787, 931
Bpu10I CCTNAGC 1 cut(s) 777
BpuEI CTTGAG 3 cut(s) 73, 221, 848
BpuMI CCSGG 2 cut(s) 245, 355
BsaBI GATNNNNATC 2 cut(s) 432, 801
BsaHI GRCGYC 2 cut(s) 206, 377
BsaJI CCNNGG 2 cut(s) 243, 333
BsaWI WCCGGW 2 cut(s) 168, 233
Bsc4I CCNNNNNNNGG 5 cut(s) 42, 121, 159, 526, 571
Bse118I RCCGGY 3 cut(s) 104, 344, 545
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 106
Bse8I GATNNNNATC 2 cut(s) 432, 801
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 2 cut(s) 243, 333
BseJI GATNNNNATC 2 cut(s) 432, 801
BseLI CCNNNNNNNGG 5 cut(s) 42, 121, 159, 526, 571
BseMI GCAATG 1 cut(s) 106
BseMII CTCAG 2 cut(s) 791, 827
BseNI ACTGG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 241
BsgI GTGCAG 1 cut(s) 588
Bsh1236I CGCG 3 cut(s) 228, 335, 697
BshFI GGCC 4 cut(s) 46, 152, 348, 674
BshNI GGYRCC 1 cut(s) 205
BsiHKAI GWGCWC 3 cut(s) 241, 365, 751
BsiSI CCGG 8 cut(s) 47, 105, 169, 234, 245, 345, 354, 546
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 5 cut(s) 42, 121, 159, 526, 571
BsmAI GTCTC 2 cut(s) 235, 826
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 148
BsmI GAATGC 2 cut(s) 227, 500
BsnI GGCC 4 cut(s) 46, 152, 348, 674
Bsp1286I GDGCHC 4 cut(s) 241, 252, 365, 751
Bsp143I GATC 5 cut(s) 173, 385, 433, 611, 955
BspACI CCGC 7 cut(s) 157, 226, 330, 333, 335, 342, 695
BspANI GGCC 4 cut(s) 46, 152, 348, 674
BspCNI CTCAG 2 cut(s) 790, 828
BspFNI CGCG 3 cut(s) 228, 335, 697
BspLI GGNNCC 6 cut(s) 24, 163, 164, 207, 249, 349
BspMAI CTGCAG 1 cut(s) 949
BspPI GGATC 2 cut(s) 168, 393
BspT107I GGYRCC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 106
BsrFI RCCGGY 3 cut(s) 104, 344, 545
BsrI ACTGG 1 cut(s) 47
BssAI RCCGGY 3 cut(s) 104, 344, 545
BssECI CCNNGG 2 cut(s) 243, 333
BssMI GATC 5 cut(s) 173, 385, 433, 611, 955
BssNI GRCGYC 2 cut(s) 206, 377
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 723
Bst6I CTCTTC 3 cut(s) 474, 572, 812
BstACI GRCGYC 2 cut(s) 206, 377
BstC8I GCNNGC 2 cut(s) 106, 346
BstDEI CTNAG 2 cut(s) 777, 836
BstDSI CCRYGG 1 cut(s) 333
BstFNI CGCG 3 cut(s) 228, 335, 697
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 3 cut(s) 7, 91, 208
BstKTI GATC 5 cut(s) 176, 388, 436, 614, 958
BstMAI GTCTC 2 cut(s) 235, 826
BstMBI GATC 5 cut(s) 173, 385, 433, 611, 955
BstMWI GCNNNNNNNGC 7 cut(s) 105, 335, 338, 341, 694, 773, 950
BstNI CCWGG 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 3 cut(s) 152, 243, 353
BstSFI CTRYAG 2 cut(s) 668, 945
BstSLI GKGCMC 1 cut(s) 241
BstUI CGCG 3 cut(s) 228, 335, 697
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 4 cut(s) 46, 152, 348, 674
BtgI CCRYGG 1 cut(s) 333
BtsI GCAGTG 1 cut(s) 661
BtsIMutI CAGTG 3 cut(s) 661, 690, 812
Cac8I GCNNGC 2 cut(s) 106, 346
CaiI CAGNNNCTG 1 cut(s) 953
CfoI GCGC 3 cut(s) 7, 91, 208
Cfr10I RCCGGY 3 cut(s) 104, 344, 545
Cfr13I GGNCC 2 cut(s) 162, 347
Cfr42I CCGCGG 1 cut(s) 336
CseI GACGC 2 cut(s) 217, 385
CviAII CATG 5 cut(s) 31, 266, 301, 307, 470
DdeI CTNAG 2 cut(s) 777, 836
DinI GGCGCC 1 cut(s) 207
DpnI GATC 5 cut(s) 175, 387, 435, 613, 957
DpnII GATC 5 cut(s) 173, 385, 433, 611, 955
DriI GACNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 2 cut(s) 44, 150
Eam1104I CTCTTC 3 cut(s) 474, 572, 812
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 3 cut(s) 474, 572, 812
Eco24I GRGCYC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 162
Eco57I CTGAAG 3 cut(s) 485, 498, 836
EcoO109I RGGNCCY 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 252
EgeI GGCGCC 1 cut(s) 207
EheI GGCGCC 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 5 cut(s) 34, 269, 304, 310, 473
FaiI YATR 6 cut(s) 32, 267, 302, 308, 471, 923
FalI AAGNNNNNCTT 4 cut(s) 569, 601, 954, 986
FaqI GGGAC 1 cut(s) 148
FatI CATG 5 cut(s) 30, 265, 300, 306, 469
FauI CCCGC 1 cut(s) 150
FbaI TGATCA 2 cut(s) 433, 955
FblI GTMKAC 2 cut(s) 126, 738
FriOI GRGCYC 1 cut(s) 252
FspBI CTAG 1 cut(s) 710
GlaI GCGC 3 cut(s) 6, 90, 207
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 4 cut(s) 46, 152, 348, 674
HapII CCGG 8 cut(s) 47, 105, 169, 234, 245, 345, 354, 546
HgaI GACGC 2 cut(s) 217, 385
HhaI GCGC 3 cut(s) 7, 91, 208
Hin1I GRCGYC 2 cut(s) 206, 377
Hin1II CATG 5 cut(s) 34, 269, 304, 310, 473
Hin6I GCGC 3 cut(s) 5, 89, 206
HinP1I GCGC 3 cut(s) 5, 89, 206
HincII GTYRAC 2 cut(s) 127, 512
HindII GTYRAC 2 cut(s) 127, 512
HinfI GANTC 4 cut(s) 185, 473, 582, 859
HpaII CCGG 8 cut(s) 47, 105, 169, 234, 245, 345, 354, 546
HphI GGTGA 7 cut(s) 304, 443, 586, 631, 684, 842, 897
Hpy166II GTNNAC 5 cut(s) 127, 239, 312, 512, 739
Hpy188I TCNGA 6 cut(s) 385, 438, 478, 643, 916, 960
Hpy188III TCNNGA 7 cut(s) 200, 710, 779, 806, 865, 938, 987
Hpy8I GTNNAC 5 cut(s) 127, 239, 312, 512, 739
Hpy99I CGWCG 7 cut(s) 79, 131, 151, 379, 385, 407, 410
HpyAV CCTTC 1 cut(s) 381
HpyCH4III ACNGT 1 cut(s) 723
HpyCH4V TGCA 8 cut(s) 214, 239, 498, 605, 631, 704, 767, 947
HpyF10VI GCNNNNNNNGC 7 cut(s) 105, 335, 338, 341, 694, 773, 950
HpyF3I CTNAG 2 cut(s) 777, 836
Hsp92I GRCGYC 2 cut(s) 206, 377
Hsp92II CATG 5 cut(s) 34, 269, 304, 310, 473
HspAI GCGC 3 cut(s) 5, 89, 206
KasI GGCGCC 1 cut(s) 205
KflI GGGWCCC 1 cut(s) 162
KroI GCCGGC 2 cut(s) 104, 344
KroNI GCCGGC 2 cut(s) 106, 346
Ksp22I TGATCA 2 cut(s) 433, 955
KspI CCGCGG 1 cut(s) 336
Kzo9I GATC 5 cut(s) 173, 385, 433, 611, 955
LmnI GCTCC 1 cut(s) 247
LweI GCATC 2 cut(s) 787, 931
MaeI CTAG 1 cut(s) 710
MaeIII GTNAC 3 cut(s) 9, 658, 690
MalI GATC 5 cut(s) 175, 387, 435, 613, 957
MboI GATC 5 cut(s) 173, 385, 433, 611, 955
MboII GAAGA 8 cut(s) 451, 454, 457, 491, 589, 829, 880, 975
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 4 cut(s) 241, 252, 365, 751
MluCI AATT 3 cut(s) 500, 558, 762
Mly113I GGCGCC 1 cut(s) 206
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 363
MroNI GCCGGC 2 cut(s) 104, 344
MroXI GAANNNNTTC 1 cut(s) 969
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 305
MspA1I CMGCKG 2 cut(s) 335, 950
MspI CCGG 8 cut(s) 47, 105, 169, 234, 245, 345, 354, 546
MspR9I CCNGG 3 cut(s) 154, 245, 355
Mva1269I GAATGC 2 cut(s) 227, 500
MvaI CCWGG 1 cut(s) 154
MvnI CGCG 3 cut(s) 228, 335, 697
MwoI GCNNNNNNNGC 7 cut(s) 105, 335, 338, 341, 694, 773, 950
NaeI GCCGGC 2 cut(s) 106, 346
NarI GGCGCC 1 cut(s) 206
NciI CCSGG 2 cut(s) 245, 355
NdeII GATC 5 cut(s) 173, 385, 433, 611, 955
NgoMIV GCCGGC 2 cut(s) 104, 344
NlaIII CATG 5 cut(s) 34, 269, 304, 310, 473
NlaIV GGNNCC 6 cut(s) 24, 163, 164, 207, 249, 349
NmuCI GTSAC 1 cut(s) 690
NspI RCATGY 1 cut(s) 269
PciI ACATGT 1 cut(s) 265
PcsI WCGNNNNNNNCGW 3 cut(s) 135, 225, 371
PctI GAATGC 2 cut(s) 227, 500
PdiI GCCGGC 2 cut(s) 106, 346
PdmI GAANNNNTTC 1 cut(s) 969
PfeI GAWTC 3 cut(s) 473, 582, 859
PflFI GACNNNGTC 1 cut(s) 379
PleI GAGTC 1 cut(s) 179
PluTI GGCGCC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 179
PpuMI RGGWCCY 1 cut(s) 162
PscI ACATGT 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 6 cut(s) 24, 163, 164, 207, 249, 349
PspPI GGNCC 2 cut(s) 162, 347
PspPPI RGGWCCY 1 cut(s) 162
PstI CTGCAG 1 cut(s) 949
PstNI CAGNNNCTG 1 cut(s) 953
PsuI RGATCY 1 cut(s) 173
PsyI GACNNNGTC 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 950
RseI CAYNNNNRTG 1 cut(s) 305
SacII CCGCGG 1 cut(s) 336
SalI GTCGAC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 399
Sau3AI GATC 5 cut(s) 173, 385, 433, 611, 955
Sau96I GGNCC 2 cut(s) 162, 347
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 3 cut(s) 154, 245, 355
SduI GDGCHC 4 cut(s) 241, 252, 365, 751
SetI ASST 8 cut(s) 16, 24, 284, 465, 630, 648, 665, 952
SfaNI GCATC 2 cut(s) 787, 931
SfcI CTRYAG 2 cut(s) 668, 945
SfoI GGCGCC 1 cut(s) 207
Sfr303I CCGCGG 1 cut(s) 336
SgrAI CRCCGGYG 1 cut(s) 545
SgrBI CCGCGG 1 cut(s) 336
SinI GGWCC 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 3 cut(s) 52, 200, 863
SmoI CTYRAG 3 cut(s) 52, 200, 863
Sse9I AATT 3 cut(s) 500, 558, 762
SsiI CCGC 7 cut(s) 157, 226, 330, 333, 335, 342, 695
SspDI GGCGCC 1 cut(s) 205
SspMI CTAG 1 cut(s) 710
StyD4I CCNGG 3 cut(s) 152, 243, 353
TaaI ACNGT 1 cut(s) 723
TaqI TCGA 5 cut(s) 126, 138, 262, 365, 374
TasI AATT 3 cut(s) 500, 558, 762
TauI GCSGC 5 cut(s) 228, 332, 335, 338, 344
TfiI GAWTC 3 cut(s) 473, 582, 859
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 3 cut(s) 661, 690, 819
TseFI GTSAC 1 cut(s) 690
Tsp45I GTSAC 1 cut(s) 690
TspDTI ATGAA 3 cut(s) 289, 336, 486
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 3 cut(s) 661, 690, 819
Tth111I GACNNNGTC 1 cut(s) 379
VneI GTGCAC 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 162
XbaI TCTAGA 1 cut(s) 709
XceI RCATGY 1 cut(s) 269
XmiI GTMKAC 2 cut(s) 126, 738
XmnI GAANNNNTTC 1 cut(s) 969
XspI CTAG 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.