MD17G1233900.v1.1
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0006664
Physical Location & Seq
Reverse (-)
28267584 .. 28271479
3896 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1233900.v1.1.491

Sequence Viewer

Length: 984 bp
ATGGCACAATTACCTCCAAAAGTTCCAAGCATGACACCCAATTGGCCTGACTTTTCACACCAGAAGATGCCGCCTTCAATGGGCGGATGTTTTGCGCCAAATGGAAATGCCACAGCCGCCACCACGTCCCAAAACCCTTGTTGGGTCGATGAATTCCTCGACTTCTCATCGGTAAGACGGGGATCCCACCGGAGATCCCTCAGCGACTCCCCCACCTTCCTCGAGGCACCAATGCAGGAAGAATGCCGTGTCTCCGCTGCACCTCCAGGCTCGCACTCGCACTCCCACGCTAACAACAATCACGAGTTTGATAGGTTTGACGACGAACAGTTCATGTCCATGTTCACCACCGATGAAATCTCCGCCGCTGCCGCAACAGTGGGACCCACGGGGTCGTCGTCGAACCCGTCCACGCCTTCCGATCATAACAGCATCAATGACGATGAGAAAGAAACGCAGGGGATTAATAAGCAGCAGCAGATCAATAAGCAGCTAAAGAATGAATCTGAAGAGGGGGAAAGCCAATGCGAACTACAAACCACATCCAATGGTAGGAAAATTGATCCCAAAAGAGTCAAGAGAATTTTGGCGAACAGACAATCTGCACAAAGATCACGGGTGAGGAAGCTGCAATACGTATCAGAACTCGAACGAAGTGTTAACTCTCTACAAGCTGAAGTTTCAGTGCTTTCACCAAGGGTTTCATTTCTTGACCATCAACGCTTGCTTCTAAATGTCGACAACAGTGCTCTCAAACAAAGAATTGCAGCATTGGCGCAGGATAATATCTTCAAAGACGCTCATCAAGAAGCATTGAAGAGGGAAATAGAGAGACTAAGGCAAGTATATTACCAACAAAACGTCAAGAAGATGGAGAGGGTCACACAATCACCAACCTCACGTACACCCCCCTCAGACACCATATCTACTACTCCTCCTCCTCCTGATCGAAAGGAACACCTTCTCAACGTATCCTCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009555 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0045893 GO:0045935 GO:0046907 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

328

Amino Acids

36.61

Weight (kDa)

6.81

Isoelectric Point (pI)

62.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 188 - 234 5.5e-08 Basic region leucine zipper
bZIP_1 PF00170 190 - 237 4.7e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 221
AccB1I GGYRCC 1 cut(s) 226
AccI GTMKAC 1 cut(s) 738
AciI CCGC 7 cut(s) 71, 84, 117, 255, 363, 366, 372
AclWI GGATC 4 cut(s) 177, 189, 190, 557
AcsI RAATTY 2 cut(s) 152, 582
AcuI CTGAAG 2 cut(s) 528, 696
AfaI GTAC 1 cut(s) 904
AfiI CCNNNNNNNGG 3 cut(s) 80, 142, 552
AgsI TTSAA 3 cut(s) 78, 793, 817
AjiI CACGTC 1 cut(s) 126
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 3 cut(s) 493, 628, 674
AluI AGCT 3 cut(s) 493, 628, 674
Alw21I GWGCWC 1 cut(s) 751
Alw26I GTCTC 2 cut(s) 256, 826
AlwI GGATC 4 cut(s) 177, 189, 190, 557
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 7 cut(s) 257, 368, 472, 475, 490, 628, 767
ApoI RAATTY 2 cut(s) 152, 582
AseI ATTAAT 1 cut(s) 465
Asp700I GAANNNNTTC 1 cut(s) 960
AspLEI GCGC 2 cut(s) 97, 778
AspS9I GGNCC 1 cut(s) 383
AsuHPI GGTGA 4 cut(s) 337, 631, 684, 882
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 383
BamHI GGATCC 1 cut(s) 182
BanI GGYRCC 1 cut(s) 226
BarI GAAGNNNNNNTAC 2 cut(s) 617, 649
BauI CACGAG 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 751
BbvCI CCTCAGC 1 cut(s) 200
BbvI GCAGC 7 cut(s) 244, 355, 484, 487, 502, 615, 779
BccI CCATC 2 cut(s) 723, 865
BceAI ACGGC 1 cut(s) 231
BcgI CGANNNNNNTGC 2 cut(s) 728, 762
BciT130I CCWGG 1 cut(s) 267
BciVI GTATCC 1 cut(s) 982
BcoDI GTCTC 2 cut(s) 256, 826
BfuI GTATCC 1 cut(s) 982
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 383
BmeT110I CYCGRG 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 383
BmiI GGNNCC 4 cut(s) 184, 228, 384, 385
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 57, 441
BpmI CTGGAG 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 200
BsaAI YACGTR 2 cut(s) 637, 902
BsaJI CCNNGG 2 cut(s) 387, 695
BsaWI WCCGGW 1 cut(s) 189
BsaXI ACNNNNNCTCC 6 cut(s) 266, 296, 919, 922, 949, 952
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 142, 552
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 387, 695
BseGI GGATG 3 cut(s) 92, 542, 977
BseLI CCNNNNNNNGG 3 cut(s) 80, 142, 552
BseMII CTCAG 2 cut(s) 214, 927
BseRI GAGGAG 3 cut(s) 924, 927, 930
BseXI GCAGC 7 cut(s) 244, 355, 484, 487, 502, 615, 779
BsgI GTGCAG 2 cut(s) 243, 588
BshFI GGCC 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 751
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 1 cut(s) 190
BslFI GGGAC 2 cut(s) 112, 396
BslI CCNNNNNNNGG 3 cut(s) 80, 142, 552
BsmAI GTCTC 2 cut(s) 256, 826
BsmFI GGGAC 2 cut(s) 112, 396
BsmI GAATGC 1 cut(s) 248
BsnI GGCC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 751
Bsp143I GATC 7 cut(s) 182, 194, 421, 480, 562, 611, 946
BspACI CCGC 7 cut(s) 71, 84, 117, 255, 363, 366, 372
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 2 cut(s) 213, 926
BspLI GGNNCC 4 cut(s) 184, 228, 384, 385
BspPI GGATC 4 cut(s) 177, 189, 190, 557
BspT107I GGYRCC 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 387, 695
BssMI GATC 7 cut(s) 182, 194, 421, 480, 562, 611, 946
BssSI CACGAG 1 cut(s) 302
BssT1I CCWWGG 1 cut(s) 695
Bst2BI CACGAG 1 cut(s) 302
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 3 cut(s) 330, 379, 746
Bst6I CTCTTC 2 cut(s) 504, 812
BstBAI YACGTR 2 cut(s) 637, 902
BstC8I GCNNGC 2 cut(s) 272, 725
BstDEI CTNAG 3 cut(s) 200, 836, 913
BstDSI CCRYGG 1 cut(s) 387
BstF5I GGATG 3 cut(s) 92, 542, 977
BstHHI GCGC 2 cut(s) 97, 778
BstKTI GATC 7 cut(s) 185, 197, 424, 483, 565, 614, 949
BstMAI GTCTC 2 cut(s) 256, 826
BstMBI GATC 7 cut(s) 182, 194, 421, 480, 562, 611, 946
BstMWI GCNNNNNNNGC 3 cut(s) 116, 371, 773
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstSNI TACGTA 1 cut(s) 637
BstV1I GCAGC 7 cut(s) 244, 355, 484, 487, 502, 615, 779
BstX2I RGATCY 2 cut(s) 182, 194
BstYI RGATCY 2 cut(s) 182, 194
BsuI GTATCC 1 cut(s) 982
BsuRI GGCC 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 387
BtrI CACGTC 1 cut(s) 126
BtsCI GGATG 3 cut(s) 92, 542, 977
BtsIMutI CAGTG 3 cut(s) 384, 690, 751
Cac8I GCNNGC 2 cut(s) 272, 725
CfoI GCGC 2 cut(s) 97, 778
Cfr13I GGNCC 1 cut(s) 383
CseI GACGC 1 cut(s) 806
Csp6I GTAC 1 cut(s) 903
CviAII CATG 3 cut(s) 31, 334, 340
CviJI RGCY 7 cut(s) 46, 116, 270, 493, 522, 628, 674
CviKI_1 RGCY 7 cut(s) 46, 116, 270, 493, 522, 628, 674
CviQI GTAC 1 cut(s) 903
DdeI CTNAG 3 cut(s) 200, 836, 913
DpnI GATC 7 cut(s) 184, 196, 423, 482, 564, 613, 948
DpnII GATC 7 cut(s) 182, 194, 421, 480, 562, 611, 946
Eam1104I CTCTTC 2 cut(s) 504, 812
EarI CTCTTC 2 cut(s) 504, 812
EciI GGCGGA 2 cut(s) 99, 352
Eco105I TACGTA 1 cut(s) 637
Eco130I CCWWGG 1 cut(s) 695
Eco47I GGWCC 1 cut(s) 383
Eco57I CTGAAG 2 cut(s) 528, 696
Eco88I CYCGRG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 383
EcoRI GAATTC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 695
ErhI CCWWGG 1 cut(s) 695
FaeI CATG 3 cut(s) 34, 337, 343
FaiI YATR 6 cut(s) 32, 335, 341, 426, 847, 923
FaqI GGGAC 2 cut(s) 112, 396
FatI CATG 3 cut(s) 30, 333, 339
FblI GTMKAC 1 cut(s) 738
FokI GGATG 3 cut(s) 99, 529, 964
GlaI GCGC 2 cut(s) 96, 777
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 1 cut(s) 46
HapII CCGG 1 cut(s) 190
HgaI GACGC 1 cut(s) 806
HhaI GCGC 2 cut(s) 97, 778
Hin1II CATG 3 cut(s) 34, 337, 343
Hin6I GCGC 2 cut(s) 95, 776
HinP1I GCGC 2 cut(s) 95, 776
HincII GTYRAC 2 cut(s) 661, 739
HindII GTYRAC 2 cut(s) 661, 739
HinfI GANTC 3 cut(s) 206, 503, 573
HpaI GTTAAC 1 cut(s) 661
HpaII CCGG 1 cut(s) 190
HphI GGTGA 4 cut(s) 337, 631, 684, 882
Hpy166II GTNNAC 5 cut(s) 345, 411, 661, 739, 905
Hpy188I TCNGA 4 cut(s) 421, 508, 643, 916
Hpy188III TCNNGA 7 cut(s) 302, 577, 710, 806, 865, 944, 981
Hpy8I GTNNAC 5 cut(s) 345, 411, 661, 739, 905
Hpy99I CGWCG 3 cut(s) 326, 400, 403
HpyAV CCTTC 4 cut(s) 84, 226, 426, 971
HpyCH4III ACNGT 3 cut(s) 330, 379, 746
HpyCH4IV ACGT 5 cut(s) 125, 636, 861, 901, 969
HpyCH4V TGCA 5 cut(s) 235, 260, 605, 631, 767
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 371, 773
HpyF3I CTNAG 3 cut(s) 200, 836, 913
HpySE526I ACGT 5 cut(s) 125, 636, 861, 901, 969
Hsp92II CATG 3 cut(s) 34, 337, 343
HspAI GCGC 2 cut(s) 95, 776
KflI GGGWCCC 1 cut(s) 383
KspAI GTTAAC 1 cut(s) 661
Kzo9I GATC 7 cut(s) 182, 194, 421, 480, 562, 611, 946
LpnPI CCDG 9 cut(s) 60, 74, 203, 221, 252, 279, 443, 764, 957
Lsp1109I GCAGC 7 cut(s) 244, 355, 484, 487, 502, 615, 779
LweI GCATC 2 cut(s) 57, 441
MaeII ACGT 5 cut(s) 125, 636, 861, 901, 969
MaeIII GTNAC 1 cut(s) 880
MalI GATC 7 cut(s) 184, 196, 423, 482, 564, 613, 948
MboI GATC 7 cut(s) 182, 194, 421, 480, 562, 611, 946
MboII GAAGA 6 cut(s) 76, 251, 521, 781, 829, 880
MfeI CAATTG 1 cut(s) 40
MflI RGATCY 2 cut(s) 182, 194
MhlI GDGCHC 1 cut(s) 751
MluCI AATT 6 cut(s) 8, 40, 152, 558, 582, 762
MlyI GAGTC 2 cut(s) 200, 582
MroXI GAANNNNTTC 1 cut(s) 960
MseI TTAA 2 cut(s) 465, 660
MslI CAYNNNNRTG 1 cut(s) 338
MspA1I CMGCKG 2 cut(s) 257, 368
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 267
MunI CAATTG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 248
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 3 cut(s) 116, 371, 773
NdeII GATC 7 cut(s) 182, 194, 421, 480, 562, 611, 946
NlaIII CATG 3 cut(s) 34, 337, 343
NlaIV GGNNCC 4 cut(s) 184, 228, 384, 385
NmuCI GTSAC 1 cut(s) 880
PaeR7I CTCGAG 1 cut(s) 221
PcsI WCGNNNNNNNCGW 2 cut(s) 395, 404
PctI GAATGC 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 960
PfeI GAWTC 1 cut(s) 503
PleI GAGTC 2 cut(s) 200, 581
PpsI GAGTC 2 cut(s) 200, 581
Ppu21I YACGTR 2 cut(s) 637, 902
PpuMI RGGWCCY 1 cut(s) 383
PshBI ATTAAT 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 4 cut(s) 184, 228, 384, 385
PspPI GGNCC 1 cut(s) 383
PspPPI RGGWCCY 1 cut(s) 383
PspXI VCTCGAGB 1 cut(s) 221
PsuI RGATCY 2 cut(s) 182, 194
RsaI GTAC 1 cut(s) 904
RsaNI GTAC 1 cut(s) 903
RseI CAYNNNNRTG 1 cut(s) 338
SalI GTCGAC 1 cut(s) 737
SaqAI TTAA 2 cut(s) 465, 660
Sau3AI GATC 7 cut(s) 182, 194, 421, 480, 562, 611, 946
Sau96I GGNCC 1 cut(s) 383
SchI GAGTC 2 cut(s) 200, 582
ScrFI CCNGG 1 cut(s) 267
SduI GDGCHC 1 cut(s) 751
SfaNI GCATC 2 cut(s) 57, 441
Sfr274I CTCGAG 1 cut(s) 221
SinI GGWCC 1 cut(s) 383
SlaI CTCGAG 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
SnaBI TACGTA 1 cut(s) 637
Sse9I AATT 6 cut(s) 8, 40, 152, 558, 582, 762
SsiI CCGC 7 cut(s) 71, 84, 117, 255, 363, 366, 372
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 695
TaaI ACNGT 3 cut(s) 330, 379, 746
TaiI ACGT 5 cut(s) 128, 639, 864, 904, 972
TaqI TCGA 7 cut(s) 147, 159, 222, 401, 648, 738, 949
TasI AATT 6 cut(s) 8, 40, 152, 558, 582, 762
TauI GCSGC 4 cut(s) 73, 119, 368, 374
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 2 cut(s) 465, 660
Tru9I TTAA 2 cut(s) 465, 660
TscAI CASTG 3 cut(s) 384, 690, 751
TseFI GTSAC 1 cut(s) 880
TseI GCWGC 7 cut(s) 257, 368, 472, 475, 490, 628, 767
Tsp45I GTSAC 1 cut(s) 880
TspDTI ATGAA 5 cut(s) 165, 322, 369, 516, 693
TspRI CASTG 3 cut(s) 384, 690, 751
VpaK11BI GGWCC 1 cut(s) 383
VspI ATTAAT 1 cut(s) 465
XapI RAATTY 2 cut(s) 152, 582
XhoI CTCGAG 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 738
XmnI GAANNNNTTC 1 cut(s) 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.