Rmu_sc0007061.1_g000008
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007061.1
OG0006664
Physical Location & Seq
Reverse (-)
49854 .. 52458
2605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007061.1_g000008.1.cds

Sequence Viewer

Length: 1116 bp
atggcacagttacccccaaaggttccaaacatgaccccaagttggccggacttcagccaccaaaagatgtcgtgttttgcacccaccggcggcaacaacggcaatgccgcctcccaaaacccttgttgggtcgacgagttcctcgacttttcgtcagccaggcggggatctcaccggagatccgtcagcgactccatcacatttctcgaggcgccaatgcagcacgaatgccgctcctctggagcacccccggagccgtcagccaggcggggatctcaccggagatccgtcagcgactccatcacatttctcgaggcgccaatgcagcacgaatgccgcgcctctggagcacccccggagcccaacaacaacaacaacaacagtcaccatgttcatgagttcgataggtttgacgatgagcagttcatgtccatgtttaccaccgatgaaatcgccgccgcagccgctgccggccccaccgggtcgtgctcgaacccttcgacgccgtcggatcacaacagcattaacgacgacgatgaacaccagcagcagcagcagcttgatgatggtgacaagaagaagcgcgagctgaagcatgaatctgaagaggcggagagcgaatgcaaattggaggcacaacaaacccagaatggggatcgcaatgcatcaaaaaacacaaccggcgacagaaaaattgacccaaaaagggtgaagagaatcttggcaaacagacaatctgcacaaagatcacgggtgaggaagctgcaatacatttcagagctggaacgcagtgttacctctctacaggccgaagtttcagtgctgtcaccgcgagttgcgtttctagatcaccaacggttgcttctaaatgtagacaacagtgctctcaaacaaagaattgcagcattggctcaggataagattttcaaagatgctcatcaagaagcactgaagagggaaatagagagactgaggcaagtgtatcaccaacagaatctcaagaagatgaacaacaacaacattgaacaatcaccaaactcggacaccataactgctcaacatcctgatgctgctgctgctgatcagaaagaacaacttctcaatgtttcttcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009555 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0045893 GO:0045935 GO:0046907 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

371

Amino Acids

41.56

Weight (kDa)

6.21

Isoelectric Point (pI)

62.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 211, 316
AccBSI CCGCTC 1 cut(s) 234
AccI GTMKAC 2 cut(s) 132, 873
AccII CGCG 3 cut(s) 339, 585, 832
AclWI GGATC 6 cut(s) 174, 175, 279, 280, 519, 663
AcoI YGGCCR 1 cut(s) 44
AcuI CTGAAG 4 cut(s) 37, 611, 624, 971
AcyI GRCGYC 3 cut(s) 212, 317, 503
AfiI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 651, 652, 706
AgsI TTSAA 2 cut(s) 928, 1025
AhdI GACNNNNNGTC 1 cut(s) 151
AjnI CCWGG 2 cut(s) 158, 263
AjuI GAANNNNNNNTTGG 4 cut(s) 704, 736, 846, 878
AluBI AGCT 4 cut(s) 559, 589, 763, 781
AluI AGCT 4 cut(s) 559, 589, 763, 781
Alw21I GWGCWC 4 cut(s) 247, 352, 491, 886
Alw26I GTCTC 1 cut(s) 961
AlwI GGATC 6 cut(s) 174, 175, 279, 280, 519, 663
AlwNI CAGNNNCTG 1 cut(s) 467
Ama87I CYCGRG 2 cut(s) 206, 311
AoxI GGCC 3 cut(s) 44, 472, 807
Asp700I GAANNNNTTC 1 cut(s) 1095
AspLEI GCGC 4 cut(s) 214, 319, 341, 585
AspS9I GGNCC 1 cut(s) 473
AsuC2I CCSGG 3 cut(s) 251, 356, 481
AvaI CYCGRG 2 cut(s) 206, 311
BanI GGYRCC 2 cut(s) 211, 316
BanII GRGCYC 1 cut(s) 363
BarI GAAGNNNNNNTAC 2 cut(s) 752, 784
Bbv12I GWGCWC 4 cut(s) 247, 352, 491, 886
BccI CCATC 3 cut(s) 203, 308, 560
BceAI ACGGC 3 cut(s) 115, 241, 490
BciT130I CCWGG 2 cut(s) 160, 265
BclI TGATCA 1 cut(s) 1081
BcnI CCSGG 3 cut(s) 251, 356, 481
BcoDI GTCTC 1 cut(s) 961
BfaI CTAG 1 cut(s) 845
BfmI CTRYAG 1 cut(s) 803
BfoI RGCGCY 2 cut(s) 215, 320
Bme1390I CCNGG 5 cut(s) 160, 251, 265, 356, 481
BmeRI GACNNNNNGTC 1 cut(s) 151
BmeT110I CYCGRG 2 cut(s) 206, 311
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 6 cut(s) 24, 213, 255, 318, 360, 475
BmrFI CCNGG 5 cut(s) 160, 251, 265, 356, 481
BmsI GCATC 3 cut(s) 674, 922, 1057
BpmI CTGGAG 2 cut(s) 261, 366
Bpu10I CCTNAGC 1 cut(s) 912
BpuEI CTTGAG 1 cut(s) 983
BpuMI CCSGG 3 cut(s) 251, 356, 481
BsaBI GATNNNNATC 1 cut(s) 936
BsaHI GRCGYC 3 cut(s) 212, 317, 503
BsaJI CCNNGG 2 cut(s) 249, 354
BsaWI WCCGGW 2 cut(s) 174, 279
Bsc4I CCNNNNNNNGG 6 cut(s) 42, 89, 127, 651, 652, 706
Bse118I RCCGGY 3 cut(s) 86, 470, 680
Bse3DI GCAATG 2 cut(s) 109, 667
Bse8I GATNNNNATC 1 cut(s) 936
BseBI CCWGG 2 cut(s) 160, 265
BseDI CCNNGG 2 cut(s) 249, 354
BseGI GGATG 1 cut(s) 1060
BseJI GATNNNNATC 1 cut(s) 936
BseLI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 651, 652, 706
BseMI GCAATG 2 cut(s) 109, 667
BseMII CTCAG 2 cut(s) 926, 962
BseRI GAGGAG 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 723
Bsh1236I CGCG 3 cut(s) 339, 585, 832
BshFI GGCC 3 cut(s) 46, 474, 809
BshNI GGYRCC 2 cut(s) 211, 316
BsiHKAI GWGCWC 4 cut(s) 247, 352, 491, 886
BsiHKCI CYCGRG 2 cut(s) 206, 311
BsiSI CCGG 9 cut(s) 47, 87, 175, 251, 280, 356, 471, 480, 681
BslI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 651, 652, 706
BsmAI GTCTC 1 cut(s) 961
BsmI GAATGC 3 cut(s) 233, 338, 626
BsnI GGCC 3 cut(s) 46, 474, 809
BsoBI CYCGRG 2 cut(s) 206, 311
Bsp1286I GDGCHC 5 cut(s) 247, 352, 363, 491, 886
Bsp143I GATC 9 cut(s) 167, 179, 272, 284, 511, 655, 746, 847, 1081
BspANI GGCC 3 cut(s) 46, 474, 809
BspCNI CTCAG 2 cut(s) 925, 963
BspFNI CGCG 3 cut(s) 339, 585, 832
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 6 cut(s) 24, 213, 255, 318, 360, 475
BspPI GGATC 6 cut(s) 174, 175, 279, 280, 519, 663
BspT107I GGYRCC 2 cut(s) 211, 316
BsrBI CCGCTC 1 cut(s) 234
BsrDI GCAATG 2 cut(s) 109, 667
BsrFI RCCGGY 3 cut(s) 86, 470, 680
BssAI RCCGGY 3 cut(s) 86, 470, 680
BssECI CCNNGG 2 cut(s) 249, 354
BssMI GATC 9 cut(s) 167, 179, 272, 284, 511, 655, 746, 847, 1081
BssNI GRCGYC 3 cut(s) 212, 317, 503
Bst2UI CCWGG 2 cut(s) 160, 265
Bst4CI ACNGT 4 cut(s) 9, 383, 858, 881
Bst6I CTCTTC 3 cut(s) 600, 707, 947
BstACI GRCGYC 3 cut(s) 212, 317, 503
BstAPI GCANNNNNTGC 1 cut(s) 467
BstC8I GCNNGC 2 cut(s) 472, 587
BstDEI CTNAG 2 cut(s) 912, 971
BstF5I GGATG 1 cut(s) 1060
BstFNI CGCG 3 cut(s) 339, 585, 832
BstH2I RGCGCY 2 cut(s) 215, 320
BstHHI GCGC 4 cut(s) 214, 319, 341, 585
BstKTI GATC 9 cut(s) 170, 182, 275, 287, 514, 658, 749, 850, 1084
BstMAI GTCTC 1 cut(s) 961
BstMBI GATC 9 cut(s) 167, 179, 272, 284, 511, 655, 746, 847, 1081
BstNI CCWGG 2 cut(s) 160, 265
BstSCI CCNGG 5 cut(s) 158, 249, 263, 354, 479
BstSFI CTRYAG 1 cut(s) 803
BstUI CGCG 3 cut(s) 339, 585, 832
BstX2I RGATCY 4 cut(s) 167, 179, 272, 284
BstYI RGATCY 4 cut(s) 167, 179, 272, 284
BsuRI GGCC 3 cut(s) 46, 474, 809
BtsCI GGATG 1 cut(s) 1060
BtsI GCAGTG 1 cut(s) 796
BtsIMutI CAGTG 4 cut(s) 796, 825, 886, 947
Cac8I GCNNGC 2 cut(s) 472, 587
CaiI CAGNNNCTG 1 cut(s) 467
CciI TCATGA 1 cut(s) 394
CfoI GCGC 4 cut(s) 214, 319, 341, 585
Cfr10I RCCGGY 3 cut(s) 86, 470, 680
Cfr13I GGNCC 1 cut(s) 473
CseI GACGC 1 cut(s) 511
CviAII CATG 6 cut(s) 31, 389, 395, 427, 433, 596
DdeI CTNAG 2 cut(s) 912, 971
DinI GGCGCC 2 cut(s) 213, 318
DpnI GATC 9 cut(s) 169, 181, 274, 286, 513, 657, 748, 849, 1083
DpnII GATC 9 cut(s) 167, 179, 272, 284, 511, 655, 746, 847, 1081
DriI GACNNNNNGTC 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 44
Eam1104I CTCTTC 3 cut(s) 600, 707, 947
Eam1105I GACNNNNNGTC 1 cut(s) 151
EarI CTCTTC 3 cut(s) 600, 707, 947
EciI GGCGGA 1 cut(s) 626
Eco24I GRGCYC 1 cut(s) 363
Eco57I CTGAAG 4 cut(s) 37, 611, 624, 971
Eco88I CYCGRG 2 cut(s) 206, 311
EcoRII CCWGG 2 cut(s) 158, 263
EcoT22I ATGCAT 1 cut(s) 667
EcoT38I GRGCYC 1 cut(s) 363
EgeI GGCGCC 2 cut(s) 213, 318
EheI GGCGCC 2 cut(s) 213, 318
FaeI CATG 6 cut(s) 34, 392, 398, 430, 436, 599
FaiI YATR 7 cut(s) 32, 390, 396, 428, 434, 597, 1049
FalI AAGNNNNNCTT 4 cut(s) 704, 736, 1080, 1112
FatI CATG 6 cut(s) 30, 388, 394, 426, 432, 595
FauI CCCGC 2 cut(s) 156, 261
FbaI TGATCA 1 cut(s) 1081
FblI GTMKAC 2 cut(s) 132, 873
FokI GGATG 1 cut(s) 1047
FriOI GRGCYC 1 cut(s) 363
FspBI CTAG 1 cut(s) 845
GlaI GCGC 4 cut(s) 213, 318, 340, 584
GsuI CTGGAG 2 cut(s) 261, 366
HaeII RGCGCY 2 cut(s) 215, 320
HaeIII GGCC 3 cut(s) 46, 474, 809
HapII CCGG 9 cut(s) 47, 87, 175, 251, 280, 356, 471, 480, 681
HgaI GACGC 1 cut(s) 511
HhaI GCGC 4 cut(s) 214, 319, 341, 585
Hin1I GRCGYC 3 cut(s) 212, 317, 503
Hin1II CATG 6 cut(s) 34, 392, 398, 430, 436, 599
Hin6I GCGC 4 cut(s) 212, 317, 339, 583
HinP1I GCGC 4 cut(s) 212, 317, 339, 583
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 5 cut(s) 191, 296, 599, 717, 994
HpaII CCGG 9 cut(s) 47, 87, 175, 251, 280, 356, 471, 480, 681
Hpy166II GTNNAC 3 cut(s) 133, 438, 874
Hpy188I TCNGA 5 cut(s) 511, 604, 778, 1042, 1086
Hpy8I GTNNAC 3 cut(s) 133, 438, 874
Hpy99I CGWCG 5 cut(s) 137, 505, 511, 533, 536
HpyAV CCTTC 1 cut(s) 507
HpyCH4III ACNGT 4 cut(s) 9, 383, 858, 881
HpyCH4V TGCA 8 cut(s) 80, 220, 325, 624, 665, 740, 766, 902
HpyF3I CTNAG 2 cut(s) 912, 971
Hsp92I GRCGYC 3 cut(s) 212, 317, 503
Hsp92II CATG 6 cut(s) 34, 392, 398, 430, 436, 599
HspAI GCGC 4 cut(s) 212, 317, 339, 583
KasI GGCGCC 2 cut(s) 211, 316
KroI GCCGGC 1 cut(s) 470
KroNI GCCGGC 1 cut(s) 472
Ksp22I TGATCA 1 cut(s) 1081
Kzo9I GATC 9 cut(s) 167, 179, 272, 284, 511, 655, 746, 847, 1081
LmnI GCTCC 5 cut(s) 239, 242, 253, 347, 358
LweI GCATC 3 cut(s) 674, 922, 1057
MaeI CTAG 1 cut(s) 845
MaeIII GTNAC 5 cut(s) 9, 383, 569, 793, 825
MalI GATC 9 cut(s) 169, 181, 274, 286, 513, 657, 748, 849, 1083
MbiI CCGCTC 1 cut(s) 234
MboI GATC 9 cut(s) 167, 179, 272, 284, 511, 655, 746, 847, 1081
MboII GAAGA 6 cut(s) 589, 617, 724, 964, 1015, 1101
MflI RGATCY 4 cut(s) 167, 179, 272, 284
MhlI GDGCHC 5 cut(s) 247, 352, 363, 491, 886
MluCI AATT 3 cut(s) 626, 693, 897
Mly113I GGCGCC 2 cut(s) 212, 317
MlyI GAGTC 2 cut(s) 185, 290
MmeI TCCRAC 1 cut(s) 489
Mph1103I ATGCAT 1 cut(s) 667
MroNI GCCGGC 1 cut(s) 470
MroXI GAANNNNTTC 1 cut(s) 1095
MseI TTAA 1 cut(s) 525
MslI CAYNNNNRTG 3 cut(s) 393, 431, 1065
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 9 cut(s) 47, 87, 175, 251, 280, 356, 471, 480, 681
MspR9I CCNGG 5 cut(s) 160, 251, 265, 356, 481
Mva1269I GAATGC 3 cut(s) 233, 338, 626
MvaI CCWGG 2 cut(s) 160, 265
MvnI CGCG 3 cut(s) 339, 585, 832
NaeI GCCGGC 1 cut(s) 472
NarI GGCGCC 2 cut(s) 212, 317
NciI CCSGG 3 cut(s) 251, 356, 481
NdeII GATC 9 cut(s) 167, 179, 272, 284, 511, 655, 746, 847, 1081
NgoMIV GCCGGC 1 cut(s) 470
NlaIII CATG 6 cut(s) 34, 392, 398, 430, 436, 599
NlaIV GGNNCC 6 cut(s) 24, 213, 255, 318, 360, 475
NmuCI GTSAC 3 cut(s) 383, 569, 825
NsiI ATGCAT 1 cut(s) 667
PaeR7I CTCGAG 2 cut(s) 206, 311
PagI TCATGA 1 cut(s) 394
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 497
PctI GAATGC 3 cut(s) 233, 338, 626
PdiI GCCGGC 1 cut(s) 472
PdmI GAANNNNTTC 1 cut(s) 1095
PfeI GAWTC 3 cut(s) 599, 717, 994
PflFI GACNNNGTC 1 cut(s) 505
PleI GAGTC 2 cut(s) 185, 290
PluTI GGCGCC 2 cut(s) 215, 320
PpsI GAGTC 2 cut(s) 185, 290
Psp6I CCWGG 2 cut(s) 158, 263
PspGI CCWGG 2 cut(s) 158, 263
PspN4I GGNNCC 6 cut(s) 24, 213, 255, 318, 360, 475
PspPI GGNCC 1 cut(s) 473
PstNI CAGNNNCTG 1 cut(s) 467
PsuI RGATCY 4 cut(s) 167, 179, 272, 284
PsyI GACNNNGTC 1 cut(s) 505
RseI CAYNNNNRTG 3 cut(s) 393, 431, 1065
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 525
Sau3AI GATC 9 cut(s) 167, 179, 272, 284, 511, 655, 746, 847, 1081
Sau96I GGNCC 1 cut(s) 473
SchI GAGTC 2 cut(s) 185, 290
ScrFI CCNGG 5 cut(s) 160, 251, 265, 356, 481
SduI GDGCHC 5 cut(s) 247, 352, 363, 491, 886
SetI ASST 7 cut(s) 24, 410, 561, 591, 765, 783, 800
SfaNI GCATC 3 cut(s) 674, 922, 1057
SfcI CTRYAG 1 cut(s) 803
SfoI GGCGCC 2 cut(s) 213, 318
Sfr274I CTCGAG 2 cut(s) 206, 311
SgrAI CRCCGGYG 1 cut(s) 86
SlaI CTCGAG 2 cut(s) 206, 311
SmiMI CAYNNNNRTG 3 cut(s) 393, 431, 1065
SmlI CTYRAG 3 cut(s) 206, 311, 998
SmoI CTYRAG 3 cut(s) 206, 311, 998
Sse9I AATT 3 cut(s) 626, 693, 897
SspDI GGCGCC 2 cut(s) 211, 316
SspMI CTAG 1 cut(s) 845
StyD4I CCNGG 5 cut(s) 158, 249, 263, 354, 479
TaaI ACNGT 4 cut(s) 9, 383, 858, 881
TaqI TCGA 7 cut(s) 132, 144, 207, 312, 402, 491, 500
TasI AATT 3 cut(s) 626, 693, 897
TauI GCSGC 7 cut(s) 93, 110, 234, 339, 458, 461, 467
TfiI GAWTC 3 cut(s) 599, 717, 994
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TscAI CASTG 4 cut(s) 796, 825, 886, 954
TseFI GTSAC 3 cut(s) 383, 569, 825
Tsp45I GTSAC 3 cut(s) 383, 569, 825
TspDTI ATGAA 6 cut(s) 383, 415, 462, 552, 612, 1022
TspGWI ACGGA 2 cut(s) 172, 277
TspRI CASTG 4 cut(s) 796, 825, 886, 954
Tth111I GACNNNGTC 1 cut(s) 505
XbaI TCTAGA 1 cut(s) 844
XhoI CTCGAG 2 cut(s) 206, 311
XmiI GTMKAC 2 cut(s) 132, 873
XmnI GAANNNNTTC 1 cut(s) 1095
XspI CTAG 1 cut(s) 845
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.