Rorug02G0281200
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006664
Physical Location & Seq
Forward (+)
30358609 .. 30359580
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0281200.1

Sequence Viewer

Length: 972 bp
ATGACTAATGAGAAGGGTCTGATCGTGAGTTTCGGGGAGATGCTGATCGACTTTGTGCCCACCGTTTCCGGTGTTTCGCTGGCGGATGCTCCGGCTTTCTTGAAAGCCCCCGGTGGCGCCCCCGCCAACGTGGCAATCGCGGTGGCTCGGCTCGGCGGCAACTCCTCATTCGTCGGGAAGCTTGGTGCCGACGAGTTCGGGCACATGCTCGCTGGAATCTTGAAGGAGAACGGGGTCTCCAACCAGGGCATCCTGTTCGACCAAGGCGCACGCACTGCTCTGGCCTTCGTGACCCTACGCGCCGATGGAGAGCGCGAGTTCATGTTCTATCGTCACCCTAGCGCAGATATGCTGCTCAACCCCGAAGAGCTCAATTTCGAGCTGATCAGATCCGCCAAAGTGTTCCATTATGGATCAATAAGCTTGATAGTAGAACCATGCAGGTCGGCACATCTAAAGGCAATGGAGGTGGCTAAAGATGCCGGTGCCCTGCTTTCCTACGACCCGAATCTCCGTCTACCACTGTGGCCCTCACCGGAGGAGGCACGCGAGCAGATAATGAGTATATGGGAAAAGGCAGAAGTGATCAAGGTCAGTGATGTGGAGCTTGAATTCCTCACAGGAAATCCCAACATTGATGATGAATCTGCAATGACTCTGTGGCACTCTAACTTGAAGCTCCTCCTCGTCACTCTTGGCGAAAAGGGTTGCAGATACTACGCGAAGAATTTCCGTGGATGTGTGGAAGCTTTTCATGTAACTGCGGTAGATACTACTGGTGCTGGTGATTCATTTGTGGGTGCTCTGCTTGCAAAGATTGTTGATGACCAATCTGTTCTTGATGATGAGCAAAGGTTGAGGGAAGTACTCAAATTCGCTAATGCATGTGGAGCAATAACAACTACTAAGAAGGGAGCAATTCCTGCACTCCCCACGGAGTCTGAAGTCCTCGCCCTAATCAAAGGGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009555 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0045893 GO:0045935 GO:0046907 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

323

Amino Acids

34.8

Weight (kDa)

5.05

Isoelectric Point (pI)

27.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 7 - 312 1.6e-73 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 432
AccB1I GGYRCC 3 cut(s) 116, 185, 485
AccI GTMKAC 1 cut(s) 517
AccII CGCG 5 cut(s) 140, 300, 315, 549, 722
AciI CCGC 6 cut(s) 83, 123, 140, 156, 393, 764
AclWI GGATC 2 cut(s) 384, 421
AcsI RAATTY 3 cut(s) 611, 727, 872
AcuI CTGAAG 1 cut(s) 963
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 867
AgsI TTSAA 4 cut(s) 103, 223, 611, 676
AjnI CCWGG 1 cut(s) 243
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 7 cut(s) 181, 370, 382, 423, 607, 679, 749
AluI AGCT 7 cut(s) 181, 370, 382, 423, 607, 679, 749
Alw21I GWGCWC 2 cut(s) 372, 805
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 2 cut(s) 384, 421
AoxI GGCC 2 cut(s) 282, 527
ApeKI GCWGC 1 cut(s) 352
ApoI RAATTY 3 cut(s) 611, 727, 872
Asp700I GAANNNNTTC 2 cut(s) 728, 750
AspLEI GCGC 5 cut(s) 119, 269, 302, 315, 344
AspS9I GGNCC 1 cut(s) 528
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 3 cut(s) 326, 525, 797
BaeGI GKGCMC 3 cut(s) 60, 204, 490
BanI GGYRCC 3 cut(s) 116, 185, 485
BanII GRGCYC 1 cut(s) 372
Bbv12I GWGCWC 2 cut(s) 372, 805
BbvI GCAGC 1 cut(s) 339
BccI CCATC 1 cut(s) 299
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciT130I CCWGG 1 cut(s) 245
BclI TGATCA 2 cut(s) 384, 585
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 1 cut(s) 339
BfoI RGCGCY 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 432
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 2 cut(s) 157, 353
BlsI GCNGC 2 cut(s) 158, 354
BmcAI AGTACT 1 cut(s) 867
Bme1390I CCNGG 2 cut(s) 111, 245
BmgT120I GGNCC 1 cut(s) 528
BmiI GGNNCC 3 cut(s) 118, 187, 487
BmrFI CCNGG 2 cut(s) 111, 245
BmsI GCATC 4 cut(s) 30, 76, 258, 469
BpuMI CCSGG 1 cut(s) 111
BsaBI GATNNNNATC 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 5 cut(s) 109, 244, 262, 733, 933
BsaWI WCCGGW 2 cut(s) 68, 535
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 1 cut(s) 781
Bse3DI GCAATG 2 cut(s) 468, 657
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 5 cut(s) 109, 244, 262, 733, 933
BseGI GGATG 3 cut(s) 91, 249, 743
BseJI GATNNNNATC 1 cut(s) 44
BseMI GCAATG 2 cut(s) 468, 657
BseNI ACTGG 1 cut(s) 781
BseRI GAGGAG 4 cut(s) 154, 554, 671, 674
BseSI GKGCMC 3 cut(s) 60, 204, 490
BseXI GCAGC 1 cut(s) 339
BsgI GTGCAG 1 cut(s) 909
Bsh1236I CGCG 5 cut(s) 140, 300, 315, 549, 722
BshFI GGCC 2 cut(s) 284, 529
BshNI GGYRCC 3 cut(s) 116, 185, 485
BsiHKAI GWGCWC 2 cut(s) 372, 805
BsiSI CCGG 5 cut(s) 69, 92, 111, 483, 536
BsmAI GTCTC 1 cut(s) 241
BsnI GGCC 2 cut(s) 284, 529
Bso31I GGTCTC 1 cut(s) 241
Bsp1286I GDGCHC 5 cut(s) 60, 204, 372, 490, 805
Bsp143I GATC 6 cut(s) 21, 45, 384, 389, 413, 585
BspACI CCGC 6 cut(s) 83, 123, 140, 156, 393, 764
BspANI GGCC 2 cut(s) 284, 529
BspFNI CGCG 5 cut(s) 140, 300, 315, 549, 722
BspLI GGNNCC 3 cut(s) 118, 187, 487
BspMI ACCTGC 1 cut(s) 432
BspPI GGATC 2 cut(s) 384, 421
BspQI GCTCTTC 1 cut(s) 360
BspT107I GGYRCC 3 cut(s) 116, 185, 485
BspTNI GGTCTC 1 cut(s) 241
BsrDI GCAATG 2 cut(s) 468, 657
BsrFI RCCGGY 1 cut(s) 482
BsrI ACTGG 1 cut(s) 781
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 5 cut(s) 109, 244, 262, 733, 933
BssMI GATC 6 cut(s) 21, 45, 384, 389, 413, 585
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 64, 525
Bst6I CTCTTC 1 cut(s) 360
BstACI GRCGYC 1 cut(s) 117
BstAPI GCANNNNNTGC 2 cut(s) 275, 923
BstC8I GCNNGC 6 cut(s) 81, 210, 271, 547, 551, 810
BstDEI CTNAG 1 cut(s) 906
BstDSI CCRYGG 2 cut(s) 733, 933
BstF5I GGATG 3 cut(s) 91, 249, 743
BstFNI CGCG 5 cut(s) 140, 300, 315, 549, 722
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 5 cut(s) 119, 269, 302, 315, 344
BstKTI GATC 6 cut(s) 24, 48, 387, 392, 416, 588
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 6 cut(s) 21, 45, 384, 389, 413, 585
BstMWI GCNNNNNNNGC 6 cut(s) 131, 275, 479, 809, 890, 923
BstNI CCWGG 1 cut(s) 245
BstNSI RCATGY 2 cut(s) 208, 888
BstSCI CCNGG 2 cut(s) 109, 243
BstSLI GKGCMC 3 cut(s) 60, 204, 490
BstUI CGCG 5 cut(s) 140, 300, 315, 549, 722
BstV1I GCAGC 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 389
BstYI RGATCY 1 cut(s) 389
BsuRI GGCC 2 cut(s) 284, 529
BtgI CCRYGG 2 cut(s) 733, 933
BtsCI GGATG 3 cut(s) 91, 249, 743
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 3 cut(s) 273, 521, 601
BveI ACCTGC 1 cut(s) 432
Cac8I GCNNGC 6 cut(s) 81, 210, 271, 547, 551, 810
CfoI GCGC 5 cut(s) 119, 269, 302, 315, 344
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 1 cut(s) 528
Csp6I GTAC 1 cut(s) 866
CspCI CAANNNNNGTGG 4 cut(s) 123, 158, 450, 485
CviAII CATG 5 cut(s) 205, 322, 438, 755, 885
CviQI GTAC 1 cut(s) 866
DdeI CTNAG 1 cut(s) 906
DinI GGCGCC 1 cut(s) 118
DpnI GATC 6 cut(s) 23, 47, 386, 391, 415, 587
DpnII GATC 6 cut(s) 21, 45, 384, 389, 413, 585
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
EciI GGCGGA 2 cut(s) 98, 382
Ecl136II GAGCTC 1 cut(s) 370
Eco130I CCWWGG 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 963
EcoICRI GAGCTC 1 cut(s) 370
EcoRI GAATTC 1 cut(s) 611
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 886
EcoT38I GRGCYC 1 cut(s) 372
EgeI GGCGCC 1 cut(s) 118
EheI GGCGCC 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 5 cut(s) 208, 325, 441, 758, 888
FatI CATG 5 cut(s) 204, 321, 437, 754, 884
FauI CCCGC 1 cut(s) 130
FbaI TGATCA 2 cut(s) 384, 585
FblI GTMKAC 1 cut(s) 517
Fnu4HI GCNGC 2 cut(s) 157, 353
FokI GGATG 3 cut(s) 98, 236, 750
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 2 cut(s) 157, 353
FspBI CTAG 1 cut(s) 339
GlaI GCGC 5 cut(s) 118, 268, 301, 314, 343
GluI GCNGC 2 cut(s) 157, 353
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 2 cut(s) 284, 529
HapII CCGG 5 cut(s) 69, 92, 111, 483, 536
HhaI GCGC 5 cut(s) 119, 269, 302, 315, 344
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 5 cut(s) 208, 325, 441, 758, 888
Hin6I GCGC 5 cut(s) 117, 267, 300, 313, 342
HinP1I GCGC 5 cut(s) 117, 267, 300, 313, 342
HindIII AAGCTT 3 cut(s) 179, 421, 747
HinfI GANTC 6 cut(s) 216, 508, 644, 655, 788, 938
HpaII CCGG 5 cut(s) 69, 92, 111, 483, 536
HphI GGTGA 3 cut(s) 326, 525, 797
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 3 cut(s) 21, 389, 943
Hpy188III TCNNGA 6 cut(s) 25, 100, 175, 220, 289, 839
Hpy8I GTNNAC 1 cut(s) 518
Hpy99I CGWCG 2 cut(s) 176, 194
HpyAV CCTTC 4 cut(s) 7, 217, 295, 904
HpyCH4III ACNGT 2 cut(s) 64, 525
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 6 cut(s) 441, 650, 711, 812, 884, 926
HpyF10VI GCNNNNNNNGC 6 cut(s) 131, 275, 479, 809, 890, 923
HpyF3I CTNAG 1 cut(s) 906
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 5 cut(s) 208, 325, 441, 758, 888
HspAI GCGC 5 cut(s) 117, 267, 300, 313, 342
KasI GGCGCC 1 cut(s) 116
Ksp22I TGATCA 2 cut(s) 384, 585
Kzo9I GATC 6 cut(s) 21, 45, 384, 389, 413, 585
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 5 cut(s) 94, 604, 684, 890, 914
Lsp1109I GCAGC 1 cut(s) 339
LweI GCATC 4 cut(s) 30, 76, 258, 469
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 4 cut(s) 289, 332, 688, 757
MalI GATC 6 cut(s) 23, 47, 386, 391, 415, 587
MboI GATC 6 cut(s) 21, 45, 384, 389, 413, 585
MboII GAAGA 2 cut(s) 377, 736
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 5 cut(s) 60, 204, 372, 490, 805
MluCI AATT 5 cut(s) 373, 611, 727, 872, 918
Mly113I GGCGCC 1 cut(s) 117
MlyI GAGTC 2 cut(s) 649, 947
MmeI TCCRAC 1 cut(s) 264
Mph1103I ATGCAT 1 cut(s) 886
MroXI GAANNNNTTC 2 cut(s) 728, 750
MspI CCGG 5 cut(s) 69, 92, 111, 483, 536
MspR9I CCNGG 2 cut(s) 111, 245
MvaI CCWGG 1 cut(s) 245
MvnI CGCG 5 cut(s) 140, 300, 315, 549, 722
MwoI GCNNNNNNNGC 6 cut(s) 131, 275, 479, 809, 890, 923
NarI GGCGCC 1 cut(s) 117
NciI CCSGG 1 cut(s) 111
NdeII GATC 6 cut(s) 21, 45, 384, 389, 413, 585
NlaIII CATG 5 cut(s) 208, 325, 441, 758, 888
NlaIV GGNNCC 3 cut(s) 118, 187, 487
NmeAIII GCCGAG 2 cut(s) 127, 132
NmuCI GTSAC 3 cut(s) 289, 332, 688
NsiI ATGCAT 1 cut(s) 886
NspI RCATGY 2 cut(s) 208, 888
PciSI GCTCTTC 1 cut(s) 360
PdmI GAANNNNTTC 2 cut(s) 728, 750
PfeI GAWTC 4 cut(s) 216, 508, 644, 788
PkrI GCNGC 2 cut(s) 158, 354
PleI GAGTC 2 cut(s) 649, 946
PluTI GGCGCC 1 cut(s) 120
PpsI GAGTC 2 cut(s) 649, 946
Psp124BI GAGCTC 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 3 cut(s) 118, 187, 487
PspPI GGNCC 1 cut(s) 528
PsuI RGATCY 1 cut(s) 389
RsaI GTAC 1 cut(s) 867
RsaNI GTAC 1 cut(s) 866
SacI GAGCTC 1 cut(s) 372
SapI GCTCTTC 1 cut(s) 360
SatI GCNGC 2 cut(s) 157, 353
Sau3AI GATC 6 cut(s) 21, 45, 384, 389, 413, 585
Sau96I GGNCC 1 cut(s) 528
ScaI AGTACT 1 cut(s) 867
SchI GAGTC 2 cut(s) 649, 947
ScrFI CCNGG 2 cut(s) 111, 245
SduI GDGCHC 5 cut(s) 60, 204, 372, 490, 805
SfaNI GCATC 4 cut(s) 30, 76, 258, 469
SfoI GGCGCC 1 cut(s) 118
Sse9I AATT 5 cut(s) 373, 611, 727, 872, 918
SsiI CCGC 6 cut(s) 83, 123, 140, 156, 393, 764
SspDI GGCGCC 1 cut(s) 116
SspMI CTAG 1 cut(s) 339
SstI GAGCTC 1 cut(s) 372
StyD4I CCNGG 2 cut(s) 109, 243
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 2 cut(s) 64, 525
TaiI ACGT 1 cut(s) 132
TaqI TCGA 3 cut(s) 48, 258, 378
TasI AATT 5 cut(s) 373, 611, 727, 872, 918
TatI WGTACW 1 cut(s) 865
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 4 cut(s) 216, 508, 644, 788
TscAI CASTG 3 cut(s) 280, 528, 601
TseFI GTSAC 3 cut(s) 289, 332, 688
TseI GCWGC 1 cut(s) 352
Tsp45I GTSAC 3 cut(s) 289, 332, 688
TspDTI ATGAA 4 cut(s) 310, 657, 743, 780
TspGWI ACGGA 3 cut(s) 503, 722, 950
TspRI CASTG 3 cut(s) 280, 528, 601
XapI RAATTY 3 cut(s) 611, 727, 872
XceI RCATGY 2 cut(s) 208, 888
XmiI GTMKAC 1 cut(s) 517
XmnI GAANNNNTTC 2 cut(s) 728, 750
XspI CTAG 1 cut(s) 339
ZrmI AGTACT 1 cut(s) 867
Zsp2I ATGCAT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.