Rroxscaffold_2G00115250
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006664
Physical Location & Seq
Reverse (-)
41453311 .. 41456416
3106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00115250.1

Sequence Viewer

Length: 924 bp
ATGGCACAGTTACCCCCAAAGGTTCCAAACATGACCCCAAGTTGGCCGGACTTCAGCCACCAAAAGATGTCGTGTTTTGCACCCACCGGCGGCAACAACGGCAATGCCGCCTCCCAAAACCCTTGTTGGGTCGACGAGTTCCTCGACTTCTCGTCGGCCAGGCGGGGATCTCACCGGAGATCCGTCAGCGACTCCATCACATTTCTCGAGGAGCCAATGCAGGACGAATGCCGCGCCTCCGGAGCACCCCCGGAGCCCAGCAACAACAACAACAGTCACCATGTTCATGAGTTCGATAGGTTTGACGATGAGCAGTTCATGTCCATGTTTACCACCGATGAAATCAACGCCGCCGCAGCCGCTGCCGGCCCCACCGGGTCGTGCTCGAACCCTTCGACGCCGTCGGATCACAACAGCATTAACGACGACGATGAACACCAGCAGCAGCAGCAGCAGCTTCATGATGGTGACAAGAAGAAGCGAGAGCTGAAGCATGAATCTGAAGAGGCGGAGAGCGAATGCAAATTGGAGGCACAACAAACCCAGAATGGGGATCGCAATGCATCAAAAAACACAACCGGCGACAGAAAAATTGACCCAAAAAGGGTGAAGAGAATCTTGGCAAACAGACAATCTGCACAAAGATCACGGGTGAGGAAGCTGCAATACATTTCAGAGCTGGAACGCAGTGTTACCTCTCTACAGGCCGAAGTTTCAGTGCTGTCACCGCGAGTTGCGTTTCTAGATCACCAACGGTTGCTTCTAAATGTAGACAACAGTGCTCTCAAACAAAGAATTGCAGCATTGGCTCAGGATAAGATTTTCAAAGATGACAACAACAACACTGAAGAGGGAAATGAACAATCACAACAAACTCAAGAAGATGGACAACACAACATAACAATCACCAAACTCGGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009555 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0045893 GO:0045935 GO:0046907 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

307

Amino Acids

34.38

Weight (kDa)

5.4

Isoelectric Point (pI)

58.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 199 - 246 1.2e-08 Basic region leucine zipper
bZIP_1 PF00170 201 - 244 5.2e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 132, 771
AccII CGCG 2 cut(s) 234, 730
AccIII TCCGGA 1 cut(s) 239
AciI CCGC 9 cut(s) 90, 108, 163, 232, 351, 354, 360, 509, 728
AclWI GGATC 4 cut(s) 174, 175, 414, 561
AcoI YGGCCR 2 cut(s) 44, 156
AcuI CTGAAG 4 cut(s) 37, 509, 522, 867
AcyI GRCGYC 1 cut(s) 398
AfiI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 549, 550, 604
AgsI TTSAA 1 cut(s) 826
AhdI GACNNNNNGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 158
AjuI GAANNNNNNNTTGG 4 cut(s) 602, 634, 744, 776
AluBI AGCT 4 cut(s) 457, 487, 661, 679
AluI AGCT 4 cut(s) 457, 487, 661, 679
Alw21I GWGCWC 3 cut(s) 247, 386, 784
AlwI GGATC 4 cut(s) 174, 175, 414, 561
AlwNI CAGNNNCTG 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 206
Aor13HI TCCGGA 1 cut(s) 239
AoxI GGCC 4 cut(s) 44, 156, 367, 705
ApeKI GCWGC 9 cut(s) 356, 362, 442, 445, 448, 451, 454, 661, 800
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 368
AsuC2I CCSGG 2 cut(s) 251, 376
AsuHPI GGTGA 8 cut(s) 164, 269, 479, 619, 664, 717, 740, 898
AvaI CYCGRG 1 cut(s) 206
BanII GRGCYC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 650, 682
Bbv12I GWGCWC 3 cut(s) 247, 386, 784
BbvI GCAGC 9 cut(s) 349, 368, 454, 457, 460, 463, 466, 648, 812
BccI CCATC 3 cut(s) 203, 458, 878
BceAI ACGGC 2 cut(s) 115, 385
BciT130I CCWGG 1 cut(s) 160
BcnI CCSGG 2 cut(s) 251, 376
BfaI CTAG 1 cut(s) 743
BfmI CTRYAG 1 cut(s) 701
Bme1390I CCNGG 3 cut(s) 160, 251, 376
BmeRI GACNNNNNGTC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 4 cut(s) 24, 213, 255, 370
BmrFI CCNGG 3 cut(s) 160, 251, 376
BmsI GCATC 1 cut(s) 572
Bpu10I CCTNAGC 1 cut(s) 810
BpuEI CTTGAG 1 cut(s) 861
BpuMI CCSGG 2 cut(s) 251, 376
BsaHI GRCGYC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 2 cut(s) 174, 239
Bsc4I CCNNNNNNNGG 6 cut(s) 42, 89, 127, 549, 550, 604
Bse118I RCCGGY 3 cut(s) 86, 365, 578
Bse3DI GCAATG 2 cut(s) 109, 565
BseAI TCCGGA 1 cut(s) 239
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 249
BseLI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 549, 550, 604
BseMI GCAATG 2 cut(s) 109, 565
BseMII CTCAG 1 cut(s) 824
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 9 cut(s) 349, 368, 454, 457, 460, 463, 466, 648, 812
BseYI CCCAGC 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 621
Bsh1236I CGCG 2 cut(s) 234, 730
BshFI GGCC 4 cut(s) 46, 158, 369, 707
BsiHKAI GWGCWC 3 cut(s) 247, 386, 784
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 8 cut(s) 47, 87, 175, 240, 251, 366, 375, 579
BslI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 549, 550, 604
BsmI GAATGC 2 cut(s) 233, 524
BsnI GGCC 4 cut(s) 46, 158, 369, 707
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 4 cut(s) 247, 258, 386, 784
Bsp13I TCCGGA 1 cut(s) 239
Bsp143I GATC 6 cut(s) 167, 179, 406, 553, 644, 745
BspACI CCGC 9 cut(s) 90, 108, 163, 232, 351, 354, 360, 509, 728
BspANI GGCC 4 cut(s) 46, 158, 369, 707
BspCNI CTCAG 1 cut(s) 823
BspEI TCCGGA 1 cut(s) 239
BspFNI CGCG 2 cut(s) 234, 730
BspHI TCATGA 2 cut(s) 286, 460
BspLI GGNNCC 4 cut(s) 24, 213, 255, 370
BspPI GGATC 4 cut(s) 174, 175, 414, 561
BsrDI GCAATG 2 cut(s) 109, 565
BsrFI RCCGGY 3 cut(s) 86, 365, 578
BssAI RCCGGY 3 cut(s) 86, 365, 578
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 6 cut(s) 167, 179, 406, 553, 644, 745
BssNI GRCGYC 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 4 cut(s) 9, 275, 756, 779
Bst6I CTCTTC 3 cut(s) 498, 605, 843
BstACI GRCGYC 1 cut(s) 398
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 1 cut(s) 810
BstFNI CGCG 2 cut(s) 234, 730
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 6 cut(s) 170, 182, 409, 556, 647, 748
BstMBI GATC 6 cut(s) 167, 179, 406, 553, 644, 745
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 3 cut(s) 158, 249, 374
BstSFI CTRYAG 1 cut(s) 701
BstUI CGCG 2 cut(s) 234, 730
BstV1I GCAGC 9 cut(s) 349, 368, 454, 457, 460, 463, 466, 648, 812
BstX2I RGATCY 2 cut(s) 167, 179
BstYI RGATCY 2 cut(s) 167, 179
BsuRI GGCC 4 cut(s) 46, 158, 369, 707
BtsI GCAGTG 1 cut(s) 694
BtsIMutI CAGTG 4 cut(s) 694, 723, 784, 843
Cac8I GCNNGC 1 cut(s) 367
CaiI CAGNNNCTG 1 cut(s) 362
CciI TCATGA 2 cut(s) 286, 460
CfoI GCGC 1 cut(s) 236
Cfr10I RCCGGY 3 cut(s) 86, 365, 578
Cfr13I GGNCC 1 cut(s) 368
CseI GACGC 1 cut(s) 406
CviAII CATG 7 cut(s) 31, 281, 287, 319, 325, 461, 494
DdeI CTNAG 1 cut(s) 810
DpnI GATC 6 cut(s) 169, 181, 408, 555, 646, 747
DpnII GATC 6 cut(s) 167, 179, 406, 553, 644, 745
DriI GACNNNNNGTC 1 cut(s) 151
EaeI YGGCCR 2 cut(s) 44, 156
Eam1104I CTCTTC 3 cut(s) 498, 605, 843
Eam1105I GACNNNNNGTC 1 cut(s) 151
EarI CTCTTC 3 cut(s) 498, 605, 843
EciI GGCGGA 1 cut(s) 524
Eco24I GRGCYC 1 cut(s) 258
Eco57I CTGAAG 4 cut(s) 37, 509, 522, 867
Eco88I CYCGRG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 565
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 7 cut(s) 34, 284, 290, 322, 328, 464, 497
FaiI YATR 9 cut(s) 32, 282, 288, 320, 326, 462, 495, 899, 922
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FatI CATG 7 cut(s) 30, 280, 286, 318, 324, 460, 493
FauI CCCGC 1 cut(s) 156
FblI GTMKAC 2 cut(s) 132, 771
FriOI GRGCYC 1 cut(s) 258
FspBI CTAG 1 cut(s) 743
GlaI GCGC 1 cut(s) 235
GsaI CCCAGC 1 cut(s) 261
HaeIII GGCC 4 cut(s) 46, 158, 369, 707
HapII CCGG 8 cut(s) 47, 87, 175, 240, 251, 366, 375, 579
HgaI GACGC 1 cut(s) 406
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 7 cut(s) 34, 284, 290, 322, 328, 464, 497
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 3 cut(s) 191, 497, 615
HpaII CCGG 8 cut(s) 47, 87, 175, 240, 251, 366, 375, 579
HphI GGTGA 8 cut(s) 164, 269, 479, 619, 664, 717, 740, 898
Hpy166II GTNNAC 3 cut(s) 133, 330, 772
Hpy188I TCNGA 4 cut(s) 406, 502, 676, 917
Hpy188III TCNNGA 7 cut(s) 206, 240, 287, 461, 743, 812, 878
Hpy8I GTNNAC 3 cut(s) 133, 330, 772
Hpy99I CGWCG 6 cut(s) 137, 157, 400, 406, 428, 431
HpyAV CCTTC 1 cut(s) 402
HpyCH4III ACNGT 4 cut(s) 9, 275, 756, 779
HpyCH4V TGCA 7 cut(s) 80, 220, 522, 563, 638, 664, 800
HpyF3I CTNAG 1 cut(s) 810
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 7 cut(s) 34, 284, 290, 322, 328, 464, 497
HspAI GCGC 1 cut(s) 234
Kpn2I TCCGGA 1 cut(s) 239
KroI GCCGGC 1 cut(s) 365
KroNI GCCGGC 1 cut(s) 367
Kzo9I GATC 6 cut(s) 167, 179, 406, 553, 644, 745
LmnI GCTCC 3 cut(s) 211, 242, 253
Lsp1109I GCAGC 9 cut(s) 349, 368, 454, 457, 460, 463, 466, 648, 812
LweI GCATC 1 cut(s) 572
MaeI CTAG 1 cut(s) 743
MaeIII GTNAC 5 cut(s) 9, 275, 467, 691, 723
MalI GATC 6 cut(s) 169, 181, 408, 555, 646, 747
MboI GATC 6 cut(s) 167, 179, 406, 553, 644, 745
MboII GAAGA 5 cut(s) 487, 515, 622, 860, 893
MflI RGATCY 2 cut(s) 167, 179
MhlI GDGCHC 4 cut(s) 247, 258, 386, 784
MluCI AATT 3 cut(s) 524, 591, 795
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 9 cut(s) 121, 152, 202, 247, 499, 523, 648, 706, 844
Mph1103I ATGCAT 1 cut(s) 565
MroI TCCGGA 1 cut(s) 239
MroNI GCCGGC 1 cut(s) 365
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 3 cut(s) 285, 323, 465
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 8 cut(s) 47, 87, 175, 240, 251, 366, 375, 579
MspR9I CCNGG 3 cut(s) 160, 251, 376
Mva1269I GAATGC 2 cut(s) 233, 524
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 2 cut(s) 234, 730
NaeI GCCGGC 1 cut(s) 367
NciI CCSGG 2 cut(s) 251, 376
NdeII GATC 6 cut(s) 167, 179, 406, 553, 644, 745
NgoMIV GCCGGC 1 cut(s) 365
NlaIII CATG 7 cut(s) 34, 284, 290, 322, 328, 464, 497
NlaIV GGNNCC 4 cut(s) 24, 213, 255, 370
NmuCI GTSAC 3 cut(s) 275, 467, 723
NsiI ATGCAT 1 cut(s) 565
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 2 cut(s) 286, 460
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 392
PctI GAATGC 2 cut(s) 233, 524
PdiI GCCGGC 1 cut(s) 367
PfeI GAWTC 2 cut(s) 497, 615
PflFI GACNNNGTC 1 cut(s) 400
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 4 cut(s) 24, 213, 255, 370
PspPI GGNCC 1 cut(s) 368
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 2 cut(s) 167, 179
PsyI GACNNNGTC 1 cut(s) 400
RseI CAYNNNNRTG 3 cut(s) 285, 323, 465
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 420
Sau3AI GATC 6 cut(s) 167, 179, 406, 553, 644, 745
Sau96I GGNCC 1 cut(s) 368
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 3 cut(s) 160, 251, 376
SduI GDGCHC 4 cut(s) 247, 258, 386, 784
SetI ASST 7 cut(s) 24, 302, 459, 489, 663, 681, 698
SfaNI GCATC 1 cut(s) 572
SfcI CTRYAG 1 cut(s) 701
Sfr274I CTCGAG 1 cut(s) 206
SgrAI CRCCGGYG 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 3 cut(s) 285, 323, 465
SmlI CTYRAG 2 cut(s) 206, 876
SmoI CTYRAG 2 cut(s) 206, 876
Sse9I AATT 3 cut(s) 524, 591, 795
SsiI CCGC 9 cut(s) 90, 108, 163, 232, 351, 354, 360, 509, 728
SspMI CTAG 1 cut(s) 743
StyD4I CCNGG 3 cut(s) 158, 249, 374
TaaI ACNGT 4 cut(s) 9, 275, 756, 779
TaqI TCGA 6 cut(s) 132, 144, 207, 294, 386, 395
TasI AATT 3 cut(s) 524, 591, 795
TauI GCSGC 6 cut(s) 93, 110, 234, 353, 356, 362
TfiI GAWTC 2 cut(s) 497, 615
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 4 cut(s) 694, 723, 784, 850
TseFI GTSAC 3 cut(s) 275, 467, 723
TseI GCWGC 9 cut(s) 356, 362, 442, 445, 448, 451, 454, 661, 800
Tsp45I GTSAC 3 cut(s) 275, 467, 723
TspDTI ATGAA 7 cut(s) 275, 307, 354, 447, 449, 510, 873
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 4 cut(s) 694, 723, 784, 850
Tth111I GACNNNGTC 1 cut(s) 400
XbaI TCTAGA 1 cut(s) 742
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 2 cut(s) 132, 771
XspI CTAG 1 cut(s) 743
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.