Rh2CG320900
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006664
Physical Location & Seq
Forward (+)
41217876 .. 41221525
3650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG320900.1

Sequence Viewer

Length: 894 bp
ATGGCACAGTTACCCCCAAAGGTTCCAAACATGACCCCAAGTTGGCCGGACTTCAGCCACCAAAAGATGTCGTGTTTTGCACCCACCGGCGGCAACAACGGCAATGCCGCCTCCCAAAACCCTTGTTGGGTCGACGAGTTCCTCGACTTTTCGTCAGCCAGGCGGGGATCTCACCGGAGATCCGTCAGCGACTCCATCACATTTCTCGAGGCGCCAATGCAGCACGAATGCCGCGCCTCTGGAGCACCCCCGGAGCCCAACAACAACAACAGCAGTCACCATGTTCATGAGTTCGATAGGTTTGACGATGAGCAGTTCATGTCCATGTTTACCACCGATGAAATCGCCGCCGCCGCCGCTGCAGGCCCCACCGGGTCGTGCTCGAACCCTTCGACGCCGTCGGATCACAACAGCATTAACGACGACGATGAACACCAGCAGCAGCAGCAGCTTGATGATGGTGACAAGAAGAAGCGAGAGCTGAAGCATGAATCTGAAGAGGCGGAGAGCGAATGCAAATTGGAGGCACAACAAACCCAGAATGGGGATCGCAATGCATCAAAAAACACAACCGGCGACAGAAAAATTGACCCAAAAAGGGTGAAGAGAATCTTGGCAAACAGACAATCTGCACAAAGATCACGGGTGAGGAAGCTGCAATACATTTCAGAGCTGGAACGCAGTGTTACCTCTCTACAGGCCGAAGTTTCAGTGCTGTCACCGCGAGTTGCGTTTCTAGATCACCAACGGTTGCTTCTAAATGTAGACAACAGTGCTCTCAAACAAAGAATTGCAGCATTGGCTCAGGATAAGATTTTCAAAGATGGTAATTATTCTTTCCTTTTCTTTTGCCAATATGTGAAGCTTGCATTTTCTTTACTGCTTTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009555 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0045893 GO:0045935 GO:0046907 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

297

Amino Acids

33.37

Weight (kDa)

5.94

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 197 - 244 1.1e-08 Basic region leucine zipper
bZIP_1 PF00170 199 - 243 5.9e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AccI GTMKAC 2 cut(s) 132, 765
AccII CGCG 2 cut(s) 234, 724
AclWI GGATC 4 cut(s) 174, 175, 411, 555
AcoI YGGCCR 1 cut(s) 44
AcuI CTGAAG 3 cut(s) 37, 503, 516
AcyI GRCGYC 2 cut(s) 212, 395
AfiI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 543, 544, 598
AgsI TTSAA 1 cut(s) 820
AhdI GACNNNNNGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 158
AjuI GAANNNNNNNTTGG 4 cut(s) 596, 628, 738, 770
AluBI AGCT 5 cut(s) 451, 481, 655, 673, 865
AluI AGCT 5 cut(s) 451, 481, 655, 673, 865
Alw21I GWGCWC 3 cut(s) 247, 383, 778
AlwI GGATC 4 cut(s) 174, 175, 411, 555
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 3 cut(s) 44, 364, 699
ApeKI GCWGC 8 cut(s) 220, 359, 439, 442, 445, 448, 655, 794
AspLEI GCGC 2 cut(s) 214, 236
AspS9I GGNCC 1 cut(s) 365
AsuC2I CCSGG 2 cut(s) 251, 373
AsuHPI GGTGA 7 cut(s) 164, 269, 473, 613, 658, 711, 734
AvaI CYCGRG 1 cut(s) 206
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 644, 676
Bbv12I GWGCWC 3 cut(s) 247, 383, 778
BbvI GCAGC 8 cut(s) 232, 346, 451, 454, 457, 460, 642, 806
BccI CCATC 3 cut(s) 203, 452, 818
BceAI ACGGC 2 cut(s) 115, 382
BciT130I CCWGG 1 cut(s) 160
BcnI CCSGG 2 cut(s) 251, 373
BfaI CTAG 1 cut(s) 737
BfmI CTRYAG 2 cut(s) 360, 695
BfoI RGCGCY 1 cut(s) 215
Bme1390I CCNGG 3 cut(s) 160, 251, 373
BmeRI GACNNNNNGTC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 4 cut(s) 24, 213, 255, 367
BmrFI CCNGG 3 cut(s) 160, 251, 373
BmsI GCATC 1 cut(s) 566
BpmI CTGGAG 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 804
BpuMI CCSGG 2 cut(s) 251, 373
BsaHI GRCGYC 2 cut(s) 212, 395
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 1 cut(s) 174
Bsc4I CCNNNNNNNGG 6 cut(s) 42, 89, 127, 543, 544, 598
Bse118I RCCGGY 2 cut(s) 86, 572
Bse3DI GCAATG 2 cut(s) 109, 559
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 249
BseLI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 543, 544, 598
BseMI GCAATG 2 cut(s) 109, 559
BseMII CTCAG 1 cut(s) 818
BseXI GCAGC 8 cut(s) 232, 346, 451, 454, 457, 460, 642, 806
BsgI GTGCAG 1 cut(s) 615
Bsh1236I CGCG 2 cut(s) 234, 724
BshFI GGCC 3 cut(s) 46, 366, 701
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 3 cut(s) 247, 383, 778
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 6 cut(s) 47, 87, 175, 251, 372, 573
BslI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 543, 544, 598
BsmI GAATGC 2 cut(s) 233, 518
BsnI GGCC 3 cut(s) 46, 366, 701
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 4 cut(s) 247, 258, 383, 778
Bsp143I GATC 6 cut(s) 167, 179, 403, 547, 638, 739
BspANI GGCC 3 cut(s) 46, 366, 701
BspCNI CTCAG 1 cut(s) 817
BspFNI CGCG 2 cut(s) 234, 724
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 4 cut(s) 24, 213, 255, 367
BspMAI CTGCAG 1 cut(s) 364
BspPI GGATC 4 cut(s) 174, 175, 411, 555
BspT107I GGYRCC 1 cut(s) 211
BsrDI GCAATG 2 cut(s) 109, 559
BsrFI RCCGGY 2 cut(s) 86, 572
BssAI RCCGGY 2 cut(s) 86, 572
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 6 cut(s) 167, 179, 403, 547, 638, 739
BssNI GRCGYC 2 cut(s) 212, 395
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 3 cut(s) 9, 750, 773
Bst6I CTCTTC 2 cut(s) 492, 599
BstACI GRCGYC 2 cut(s) 212, 395
BstC8I GCNNGC 2 cut(s) 364, 867
BstDEI CTNAG 1 cut(s) 804
BstFNI CGCG 2 cut(s) 234, 724
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 2 cut(s) 214, 236
BstKTI GATC 6 cut(s) 170, 182, 406, 550, 641, 742
BstMBI GATC 6 cut(s) 167, 179, 403, 547, 638, 739
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 3 cut(s) 158, 249, 371
BstSFI CTRYAG 2 cut(s) 360, 695
BstUI CGCG 2 cut(s) 234, 724
BstV1I GCAGC 8 cut(s) 232, 346, 451, 454, 457, 460, 642, 806
BstX2I RGATCY 2 cut(s) 167, 179
BstYI RGATCY 2 cut(s) 167, 179
BsuRI GGCC 3 cut(s) 46, 366, 701
BtsI GCAGTG 1 cut(s) 688
BtsIMutI CAGTG 3 cut(s) 688, 717, 778
Cac8I GCNNGC 2 cut(s) 364, 867
CciI TCATGA 1 cut(s) 286
CfoI GCGC 2 cut(s) 214, 236
Cfr10I RCCGGY 2 cut(s) 86, 572
Cfr13I GGNCC 1 cut(s) 365
CseI GACGC 1 cut(s) 403
CviAII CATG 6 cut(s) 31, 281, 287, 319, 325, 488
DdeI CTNAG 1 cut(s) 804
DinI GGCGCC 1 cut(s) 213
DpnI GATC 6 cut(s) 169, 181, 405, 549, 640, 741
DpnII GATC 6 cut(s) 167, 179, 403, 547, 638, 739
DriI GACNNNNNGTC 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 44
Eam1104I CTCTTC 2 cut(s) 492, 599
Eam1105I GACNNNNNGTC 1 cut(s) 151
EarI CTCTTC 2 cut(s) 492, 599
EciI GGCGGA 1 cut(s) 518
Eco24I GRGCYC 1 cut(s) 258
Eco57I CTGAAG 3 cut(s) 37, 503, 516
Eco88I CYCGRG 1 cut(s) 206
EcoO109I RGGNCCY 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 258
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
FaeI CATG 6 cut(s) 34, 284, 290, 322, 328, 491
FaiI YATR 7 cut(s) 32, 282, 288, 320, 326, 489, 858
FalI AAGNNNNNCTT 2 cut(s) 596, 628
FatI CATG 6 cut(s) 30, 280, 286, 318, 324, 487
FauI CCCGC 1 cut(s) 156
FblI GTMKAC 2 cut(s) 132, 765
FriOI GRGCYC 1 cut(s) 258
FspBI CTAG 1 cut(s) 737
GlaI GCGC 2 cut(s) 213, 235
GsuI CTGGAG 1 cut(s) 261
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 3 cut(s) 46, 366, 701
HapII CCGG 6 cut(s) 47, 87, 175, 251, 372, 573
HgaI GACGC 1 cut(s) 403
HhaI GCGC 2 cut(s) 214, 236
Hin1I GRCGYC 2 cut(s) 212, 395
Hin1II CATG 6 cut(s) 34, 284, 290, 322, 328, 491
Hin6I GCGC 2 cut(s) 212, 234
HinP1I GCGC 2 cut(s) 212, 234
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 863
HinfI GANTC 3 cut(s) 191, 491, 609
HpaII CCGG 6 cut(s) 47, 87, 175, 251, 372, 573
HphI GGTGA 7 cut(s) 164, 269, 473, 613, 658, 711, 734
Hpy166II GTNNAC 3 cut(s) 133, 330, 766
Hpy188I TCNGA 3 cut(s) 403, 496, 670
Hpy188III TCNNGA 5 cut(s) 206, 240, 287, 737, 806
Hpy8I GTNNAC 3 cut(s) 133, 330, 766
Hpy99I CGWCG 5 cut(s) 137, 397, 403, 425, 428
HpyAV CCTTC 1 cut(s) 399
HpyCH4III ACNGT 3 cut(s) 9, 750, 773
HpyCH4V TGCA 9 cut(s) 80, 220, 362, 516, 557, 632, 658, 794, 869
HpyF3I CTNAG 1 cut(s) 804
Hsp92I GRCGYC 2 cut(s) 212, 395
Hsp92II CATG 6 cut(s) 34, 284, 290, 322, 328, 491
HspAI GCGC 2 cut(s) 212, 234
KasI GGCGCC 1 cut(s) 211
Kzo9I GATC 6 cut(s) 167, 179, 403, 547, 638, 739
LmnI GCTCC 2 cut(s) 242, 253
Lsp1109I GCAGC 8 cut(s) 232, 346, 451, 454, 457, 460, 642, 806
LweI GCATC 1 cut(s) 566
MaeI CTAG 1 cut(s) 737
MaeIII GTNAC 5 cut(s) 9, 275, 461, 685, 717
MalI GATC 6 cut(s) 169, 181, 405, 549, 640, 741
MboI GATC 6 cut(s) 167, 179, 403, 547, 638, 739
MboII GAAGA 3 cut(s) 481, 509, 616
MflI RGATCY 2 cut(s) 167, 179
MhlI GDGCHC 4 cut(s) 247, 258, 383, 778
MluCI AATT 4 cut(s) 518, 585, 789, 829
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 8 cut(s) 121, 152, 202, 247, 493, 517, 642, 700
Mph1103I ATGCAT 1 cut(s) 559
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 2 cut(s) 285, 323
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 6 cut(s) 47, 87, 175, 251, 372, 573
MspR9I CCNGG 3 cut(s) 160, 251, 373
Mva1269I GAATGC 2 cut(s) 233, 518
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 2 cut(s) 234, 724
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 2 cut(s) 251, 373
NdeII GATC 6 cut(s) 167, 179, 403, 547, 638, 739
NlaIII CATG 6 cut(s) 34, 284, 290, 322, 328, 491
NlaIV GGNNCC 4 cut(s) 24, 213, 255, 367
NmuCI GTSAC 3 cut(s) 275, 461, 717
NsiI ATGCAT 1 cut(s) 559
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 1 cut(s) 286
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 389
PctI GAATGC 2 cut(s) 233, 518
PfeI GAWTC 2 cut(s) 491, 609
PflFI GACNNNGTC 1 cut(s) 397
PleI GAGTC 1 cut(s) 185
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 4 cut(s) 24, 213, 255, 367
PspPI GGNCC 1 cut(s) 365
PstI CTGCAG 1 cut(s) 364
PsuI RGATCY 2 cut(s) 167, 179
PsyI GACNNNGTC 1 cut(s) 397
RseI CAYNNNNRTG 2 cut(s) 285, 323
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 417
Sau3AI GATC 6 cut(s) 167, 179, 403, 547, 638, 739
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 3 cut(s) 160, 251, 373
SduI GDGCHC 4 cut(s) 247, 258, 383, 778
SetI ASST 8 cut(s) 24, 302, 453, 483, 657, 675, 692, 867
SfaNI GCATC 1 cut(s) 566
SfcI CTRYAG 2 cut(s) 360, 695
SfoI GGCGCC 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 206
SgrAI CRCCGGYG 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 2 cut(s) 285, 323
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 4 cut(s) 518, 585, 789, 829
SspDI GGCGCC 1 cut(s) 211
SspMI CTAG 1 cut(s) 737
StyD4I CCNGG 3 cut(s) 158, 249, 371
TaaI ACNGT 3 cut(s) 9, 750, 773
TaqI TCGA 6 cut(s) 132, 144, 207, 294, 383, 392
TasI AATT 4 cut(s) 518, 585, 789, 829
TauI GCSGC 7 cut(s) 93, 110, 234, 350, 353, 356, 359
TfiI GAWTC 2 cut(s) 491, 609
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 3 cut(s) 688, 717, 778
TseFI GTSAC 3 cut(s) 275, 461, 717
TseI GCWGC 8 cut(s) 220, 359, 439, 442, 445, 448, 655, 794
Tsp45I GTSAC 3 cut(s) 275, 461, 717
TspDTI ATGAA 5 cut(s) 275, 307, 354, 444, 504
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 3 cut(s) 688, 717, 778
Tth111I GACNNNGTC 1 cut(s) 397
XbaI TCTAGA 1 cut(s) 736
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 2 cut(s) 132, 765
XspI CTAG 1 cut(s) 737
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.