Rh2AG334000
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006664
Physical Location & Seq
Forward (+)
48377741 .. 48381474
3734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG334000.1

Sequence Viewer

Length: 900 bp
ATGGCACAGTTACCCCCAAAGGTTCCAAACATGACCCCAAGTTGGCCGGACTTCAGCCACCAAAAGATGTCGTGTTTTGCACCCACCGGCGGCAACAACGGCAATGCCGCCTCCCAAAACCCTTGTTGGGTCGACGAGTTCCTCGACTTCTCGTCAGCCAGGCGGGGATCCCACCGGAGATCCGTCAGCGACTCCATCACATTTCTCGAGGCGCCAATGCAGCACGAATGCCGCGCCTCTGGAGCACCCCCGGAGCCCAACAACAACAACAACAGTCACCATGTTCATGAGTTCGATAGGTTTGACGATGAGCAGTTCATGTCCATGTTTACCACCGATGAAATCGCCGCCGCCACCGCCGCCGCTGCCGGCCCCACTGGGTCGTGCTCGAACCCTTCGACGCCGTCGGATCACAACAGCATTAACGACGACGATGAACACCAGCAGCAGCAGCAGCTTGATGATGGTGACAAGAAGAAGCGAGAGCTGAAGCATGAATCTGAAGAGGCGGAGAGCGAATGCAAATTGGAGGCACAACAAACCCAGAATGGGGATCGCAATGCATCAAAAAACACAACCGGCGACAGAAAAATTGACCCAAAAAGGGTGAAGAGAATCTTGGCAAACAGACAATCTGCACAAAGATCACGGGTGAGGAAGCTGCAATACATTTCAGAGCTGGAACGCAGTGTTACCTCTCTACAGGCCGAAGTTTCAGTGCTGTCACCGCGAGTTGCGTTTCTAGATCACCAACGGTTGCTTCTAAATGTAGACAACAGTGCTCTCAAACAAAGAATTGCAGCATTGGCTCAGGATAAGATTTTCAAAGATGGTAATTATTCTTTCCTTTTCTTTTGCCAATATGTGAAGCTTGCATTTTCTTTACTGCTTTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009555 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0045893 GO:0045935 GO:0046907 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

299

Amino Acids

33.57

Weight (kDa)

5.94

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 199 - 246 1.2e-08 Basic region leucine zipper
bZIP_1 PF00170 201 - 245 6e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AccI GTMKAC 2 cut(s) 132, 771
AccII CGCG 2 cut(s) 234, 730
AclWI GGATC 5 cut(s) 162, 174, 175, 417, 561
AcoI YGGCCR 1 cut(s) 44
AcuI CTGAAG 3 cut(s) 37, 509, 522
AcyI GRCGYC 2 cut(s) 212, 401
AfiI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 549, 550, 604
AgsI TTSAA 1 cut(s) 826
AhdI GACNNNNNGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 158
AjuI GAANNNNNNNTTGG 4 cut(s) 602, 634, 744, 776
AluBI AGCT 5 cut(s) 457, 487, 661, 679, 871
AluI AGCT 5 cut(s) 457, 487, 661, 679, 871
Alw21I GWGCWC 3 cut(s) 247, 389, 784
AlwI GGATC 5 cut(s) 162, 174, 175, 417, 561
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 3 cut(s) 44, 370, 705
ApeKI GCWGC 8 cut(s) 220, 365, 445, 448, 451, 454, 661, 800
AspLEI GCGC 2 cut(s) 214, 236
AspS9I GGNCC 1 cut(s) 371
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 6 cut(s) 269, 479, 619, 664, 717, 740
AvaI CYCGRG 1 cut(s) 206
BamHI GGATCC 1 cut(s) 167
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 650, 682
Bbv12I GWGCWC 3 cut(s) 247, 389, 784
BbvI GCAGC 8 cut(s) 232, 352, 457, 460, 463, 466, 648, 812
BccI CCATC 3 cut(s) 203, 458, 824
BceAI ACGGC 2 cut(s) 115, 388
BciT130I CCWGG 1 cut(s) 160
BcnI CCSGG 1 cut(s) 251
BfaI CTAG 1 cut(s) 743
BfmI CTRYAG 1 cut(s) 701
BfoI RGCGCY 1 cut(s) 215
Bme1390I CCNGG 2 cut(s) 160, 251
BmeRI GACNNNNNGTC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 5 cut(s) 24, 169, 213, 255, 373
BmrFI CCNGG 2 cut(s) 160, 251
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 1 cut(s) 572
BmuI ACTGGG 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 810
BpuMI CCSGG 1 cut(s) 251
BsaHI GRCGYC 2 cut(s) 212, 401
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 1 cut(s) 174
Bsc4I CCNNNNNNNGG 6 cut(s) 42, 89, 127, 549, 550, 604
Bse118I RCCGGY 3 cut(s) 86, 368, 578
Bse1I ACTGG 1 cut(s) 382
Bse3DI GCAATG 2 cut(s) 109, 565
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 249
BseLI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 549, 550, 604
BseMI GCAATG 2 cut(s) 109, 565
BseMII CTCAG 1 cut(s) 824
BseNI ACTGG 1 cut(s) 382
BseXI GCAGC 8 cut(s) 232, 352, 457, 460, 463, 466, 648, 812
BsgI GTGCAG 1 cut(s) 621
Bsh1236I CGCG 2 cut(s) 234, 730
BshFI GGCC 3 cut(s) 46, 372, 707
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 3 cut(s) 247, 389, 784
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 6 cut(s) 47, 87, 175, 251, 369, 579
BslI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 549, 550, 604
BsmI GAATGC 2 cut(s) 233, 524
BsnI GGCC 3 cut(s) 46, 372, 707
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 4 cut(s) 247, 258, 389, 784
Bsp143I GATC 6 cut(s) 167, 179, 409, 553, 644, 745
BspANI GGCC 3 cut(s) 46, 372, 707
BspCNI CTCAG 1 cut(s) 823
BspFNI CGCG 2 cut(s) 234, 730
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 5 cut(s) 24, 169, 213, 255, 373
BspPI GGATC 5 cut(s) 162, 174, 175, 417, 561
BspT107I GGYRCC 1 cut(s) 211
BsrDI GCAATG 2 cut(s) 109, 565
BsrFI RCCGGY 3 cut(s) 86, 368, 578
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 3 cut(s) 86, 368, 578
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 6 cut(s) 167, 179, 409, 553, 644, 745
BssNI GRCGYC 2 cut(s) 212, 401
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 4 cut(s) 9, 275, 756, 779
Bst6I CTCTTC 2 cut(s) 498, 605
BstACI GRCGYC 2 cut(s) 212, 401
BstC8I GCNNGC 2 cut(s) 370, 873
BstDEI CTNAG 1 cut(s) 810
BstFNI CGCG 2 cut(s) 234, 730
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 2 cut(s) 214, 236
BstKTI GATC 6 cut(s) 170, 182, 412, 556, 647, 748
BstMBI GATC 6 cut(s) 167, 179, 409, 553, 644, 745
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 158, 249
BstSFI CTRYAG 1 cut(s) 701
BstUI CGCG 2 cut(s) 234, 730
BstV1I GCAGC 8 cut(s) 232, 352, 457, 460, 463, 466, 648, 812
BstX2I RGATCY 2 cut(s) 167, 179
BstYI RGATCY 2 cut(s) 167, 179
BsuRI GGCC 3 cut(s) 46, 372, 707
BtsI GCAGTG 1 cut(s) 694
BtsIMutI CAGTG 4 cut(s) 375, 694, 723, 784
Cac8I GCNNGC 2 cut(s) 370, 873
CciI TCATGA 1 cut(s) 286
CfoI GCGC 2 cut(s) 214, 236
Cfr10I RCCGGY 3 cut(s) 86, 368, 578
Cfr13I GGNCC 1 cut(s) 371
CseI GACGC 1 cut(s) 409
CviAII CATG 6 cut(s) 31, 281, 287, 319, 325, 494
DdeI CTNAG 1 cut(s) 810
DinI GGCGCC 1 cut(s) 213
DpnI GATC 6 cut(s) 169, 181, 411, 555, 646, 747
DpnII GATC 6 cut(s) 167, 179, 409, 553, 644, 745
DriI GACNNNNNGTC 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 44
Eam1104I CTCTTC 2 cut(s) 498, 605
Eam1105I GACNNNNNGTC 1 cut(s) 151
EarI CTCTTC 2 cut(s) 498, 605
EciI GGCGGA 1 cut(s) 524
Eco24I GRGCYC 1 cut(s) 258
Eco57I CTGAAG 3 cut(s) 37, 509, 522
Eco88I CYCGRG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 565
EcoT38I GRGCYC 1 cut(s) 258
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
FaeI CATG 6 cut(s) 34, 284, 290, 322, 328, 497
FaiI YATR 7 cut(s) 32, 282, 288, 320, 326, 495, 864
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FatI CATG 6 cut(s) 30, 280, 286, 318, 324, 493
FauI CCCGC 1 cut(s) 156
FblI GTMKAC 2 cut(s) 132, 771
FriOI GRGCYC 1 cut(s) 258
FspBI CTAG 1 cut(s) 743
GlaI GCGC 2 cut(s) 213, 235
GsuI CTGGAG 1 cut(s) 261
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 3 cut(s) 46, 372, 707
HapII CCGG 6 cut(s) 47, 87, 175, 251, 369, 579
HgaI GACGC 1 cut(s) 409
HhaI GCGC 2 cut(s) 214, 236
Hin1I GRCGYC 2 cut(s) 212, 401
Hin1II CATG 6 cut(s) 34, 284, 290, 322, 328, 497
Hin6I GCGC 2 cut(s) 212, 234
HinP1I GCGC 2 cut(s) 212, 234
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 869
HinfI GANTC 3 cut(s) 191, 497, 615
HpaII CCGG 6 cut(s) 47, 87, 175, 251, 369, 579
HphI GGTGA 6 cut(s) 269, 479, 619, 664, 717, 740
Hpy166II GTNNAC 3 cut(s) 133, 330, 772
Hpy188I TCNGA 3 cut(s) 409, 502, 676
Hpy188III TCNNGA 5 cut(s) 206, 240, 287, 743, 812
Hpy8I GTNNAC 3 cut(s) 133, 330, 772
Hpy99I CGWCG 5 cut(s) 137, 403, 409, 431, 434
HpyAV CCTTC 1 cut(s) 405
HpyCH4III ACNGT 4 cut(s) 9, 275, 756, 779
HpyCH4V TGCA 8 cut(s) 80, 220, 522, 563, 638, 664, 800, 875
HpyF3I CTNAG 1 cut(s) 810
Hsp92I GRCGYC 2 cut(s) 212, 401
Hsp92II CATG 6 cut(s) 34, 284, 290, 322, 328, 497
HspAI GCGC 2 cut(s) 212, 234
KasI GGCGCC 1 cut(s) 211
KroI GCCGGC 1 cut(s) 368
KroNI GCCGGC 1 cut(s) 370
Kzo9I GATC 6 cut(s) 167, 179, 409, 553, 644, 745
LmnI GCTCC 2 cut(s) 242, 253
Lsp1109I GCAGC 8 cut(s) 232, 352, 457, 460, 463, 466, 648, 812
LweI GCATC 1 cut(s) 572
MaeI CTAG 1 cut(s) 743
MaeIII GTNAC 5 cut(s) 9, 275, 467, 691, 723
MalI GATC 6 cut(s) 169, 181, 411, 555, 646, 747
MboI GATC 6 cut(s) 167, 179, 409, 553, 644, 745
MboII GAAGA 3 cut(s) 487, 515, 622
MflI RGATCY 2 cut(s) 167, 179
MhlI GDGCHC 4 cut(s) 247, 258, 389, 784
MluCI AATT 4 cut(s) 524, 591, 795, 835
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 8 cut(s) 121, 152, 202, 247, 499, 523, 648, 706
Mph1103I ATGCAT 1 cut(s) 565
MroNI GCCGGC 1 cut(s) 368
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 2 cut(s) 285, 323
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 6 cut(s) 47, 87, 175, 251, 369, 579
MspR9I CCNGG 2 cut(s) 160, 251
Mva1269I GAATGC 2 cut(s) 233, 524
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 2 cut(s) 234, 730
NaeI GCCGGC 1 cut(s) 370
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 1 cut(s) 251
NdeII GATC 6 cut(s) 167, 179, 409, 553, 644, 745
NgoMIV GCCGGC 1 cut(s) 368
NlaIII CATG 6 cut(s) 34, 284, 290, 322, 328, 497
NlaIV GGNNCC 5 cut(s) 24, 169, 213, 255, 373
NmuCI GTSAC 3 cut(s) 275, 467, 723
NsiI ATGCAT 1 cut(s) 565
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 1 cut(s) 286
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 395
PctI GAATGC 2 cut(s) 233, 524
PdiI GCCGGC 1 cut(s) 370
PfeI GAWTC 2 cut(s) 497, 615
PflFI GACNNNGTC 1 cut(s) 403
PleI GAGTC 1 cut(s) 185
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 5 cut(s) 24, 169, 213, 255, 373
PspPI GGNCC 1 cut(s) 371
PsuI RGATCY 2 cut(s) 167, 179
PsyI GACNNNGTC 1 cut(s) 403
RseI CAYNNNNRTG 2 cut(s) 285, 323
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 423
Sau3AI GATC 6 cut(s) 167, 179, 409, 553, 644, 745
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 2 cut(s) 160, 251
SduI GDGCHC 4 cut(s) 247, 258, 389, 784
SetI ASST 8 cut(s) 24, 302, 459, 489, 663, 681, 698, 873
SfaNI GCATC 1 cut(s) 572
SfcI CTRYAG 1 cut(s) 701
SfoI GGCGCC 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 206
SgrAI CRCCGGYG 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 2 cut(s) 285, 323
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 4 cut(s) 524, 591, 795, 835
SspDI GGCGCC 1 cut(s) 211
SspMI CTAG 1 cut(s) 743
StyD4I CCNGG 2 cut(s) 158, 249
TaaI ACNGT 4 cut(s) 9, 275, 756, 779
TaqI TCGA 6 cut(s) 132, 144, 207, 294, 389, 398
TasI AATT 4 cut(s) 524, 591, 795, 835
TauI GCSGC 7 cut(s) 93, 110, 234, 350, 353, 362, 365
TfiI GAWTC 2 cut(s) 497, 615
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 4 cut(s) 382, 694, 723, 784
TseFI GTSAC 3 cut(s) 275, 467, 723
TseI GCWGC 8 cut(s) 220, 365, 445, 448, 451, 454, 661, 800
Tsp45I GTSAC 3 cut(s) 275, 467, 723
TspDTI ATGAA 5 cut(s) 275, 307, 354, 450, 510
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 4 cut(s) 382, 694, 723, 784
Tth111I GACNNNGTC 1 cut(s) 403
XbaI TCTAGA 1 cut(s) 742
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 2 cut(s) 132, 771
XspI CTAG 1 cut(s) 743
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.