Rh2BG342000
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006664
Physical Location & Seq
Forward (+)
45689688 .. 45693351
3664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG342000.1

Sequence Viewer

Length: 708 bp
ATGGCACAGTTACCCCCAAAGGTTCCAAACATGACCCCAAGTTGGCCGGACTTCAGCCACCAAAAGATGTCGTGTTTTGCACCCACCGGCGGCAACAACGGCAATGCCGCCTCCCAAAACCCTTGTTGGGTCGACGAGTTCCTCGACTTCTCGTCAGCCAGGCGGGGATCTCACCGGAGATCCGTCAGCGACTCCATCACATTTCTCGAGGCGCCAATGCAGCACGAATGCCGCGCCTCTGGAGCACCCCCGGAGCCCAACAACAACAACAACAGTCACCATGTTCATGAGTTCGATAGGTTTGACGATGAGCAGTTCATGTCCATGTTTACCACCGATGAAATCGCCGCCGCAGCCGCTGCCGGCCCCACCGGGTCGTGCTCGAACCCTTCGACGCCGTCGGATCACAACAGCATTAACGACGACGATGAACACCAGCAGCAGCAGCAGCTTGATGATGGTGACAAGAAGAAGCGCGAGCTGAAGCATGAATCTGAAGAGGCGGAGAGCGAATGCAAATTGGAGGCACAACAAACCCAGAATGGGGATCGCAATGCATCAAAAAACACAACCGGCGACAGAAAAATTGACCCAAAAAGGGTGAAGAGAATCTTGGCAAACAGACAATCTGCACAAAGATCACGGGTGAGGAAGCTGCAATACATTTCAGAGCTGGAACGCAGTGTTACCTCTCTACAGGTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006810 GO:0006811 GO:0006820 GO:0006913 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0008150 GO:0008272 GO:0009267 GO:0009292 GO:0009294 GO:0009555 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009970 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015698 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045595 GO:0045596 GO:0045893 GO:0045935 GO:0046907 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051019 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071496 GO:0072348 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1 bZIP_2

Protein Analysis

235

Amino Acids

26.3

Weight (kDa)

5.72

Isoelectric Point (pI)

59.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 197 - 233 1e-06 Basic region leucine zipper
bZIP_1 PF00170 199 - 233 6e-08 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AccI GTMKAC 1 cut(s) 132
AccII CGCG 2 cut(s) 234, 477
AciI CCGC 8 cut(s) 90, 108, 163, 232, 348, 351, 357, 503
AclWI GGATC 4 cut(s) 174, 175, 411, 555
AcoI YGGCCR 1 cut(s) 44
AcuI CTGAAG 3 cut(s) 37, 503, 516
AcyI GRCGYC 2 cut(s) 212, 395
AfiI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 543, 544, 598
AhdI GACNNNNNGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 158
AjuI GAANNNNNNNTTGG 2 cut(s) 596, 628
AluBI AGCT 4 cut(s) 451, 481, 655, 673
AluI AGCT 4 cut(s) 451, 481, 655, 673
Alw21I GWGCWC 2 cut(s) 247, 383
AlwI GGATC 4 cut(s) 174, 175, 411, 555
AlwNI CAGNNNCTG 1 cut(s) 359
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 2 cut(s) 44, 364
ApeKI GCWGC 8 cut(s) 220, 353, 359, 439, 442, 445, 448, 655
AspLEI GCGC 3 cut(s) 214, 236, 477
AspS9I GGNCC 1 cut(s) 365
AsuC2I CCSGG 2 cut(s) 251, 373
AsuHPI GGTGA 5 cut(s) 164, 269, 473, 613, 658
AvaI CYCGRG 1 cut(s) 206
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 258
BarI GAAGNNNNNNTAC 2 cut(s) 644, 676
Bbv12I GWGCWC 2 cut(s) 247, 383
BbvI GCAGC 8 cut(s) 232, 346, 365, 451, 454, 457, 460, 642
BccI CCATC 2 cut(s) 203, 452
BceAI ACGGC 2 cut(s) 115, 382
BciT130I CCWGG 1 cut(s) 160
BcnI CCSGG 2 cut(s) 251, 373
BfmI CTRYAG 1 cut(s) 695
BfoI RGCGCY 1 cut(s) 215
Bme1390I CCNGG 3 cut(s) 160, 251, 373
BmeRI GACNNNNNGTC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 4 cut(s) 24, 213, 255, 367
BmrFI CCNGG 3 cut(s) 160, 251, 373
BmsI GCATC 1 cut(s) 566
BpmI CTGGAG 1 cut(s) 261
BpuMI CCSGG 2 cut(s) 251, 373
BsaHI GRCGYC 2 cut(s) 212, 395
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 1 cut(s) 174
Bsc4I CCNNNNNNNGG 6 cut(s) 42, 89, 127, 543, 544, 598
Bse118I RCCGGY 3 cut(s) 86, 362, 572
Bse3DI GCAATG 2 cut(s) 109, 559
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 249
BseLI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 543, 544, 598
BseMI GCAATG 2 cut(s) 109, 559
BseXI GCAGC 8 cut(s) 232, 346, 365, 451, 454, 457, 460, 642
BsgI GTGCAG 1 cut(s) 615
Bsh1236I CGCG 2 cut(s) 234, 477
BshFI GGCC 2 cut(s) 46, 366
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 2 cut(s) 247, 383
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 7 cut(s) 47, 87, 175, 251, 363, 372, 573
BslI CCNNNNNNNGG 6 cut(s) 42, 89, 127, 543, 544, 598
BsmI GAATGC 2 cut(s) 233, 518
BsnI GGCC 2 cut(s) 46, 366
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 3 cut(s) 247, 258, 383
Bsp143I GATC 5 cut(s) 167, 179, 403, 547, 638
BspACI CCGC 8 cut(s) 90, 108, 163, 232, 348, 351, 357, 503
BspANI GGCC 2 cut(s) 46, 366
BspFNI CGCG 2 cut(s) 234, 477
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 4 cut(s) 24, 213, 255, 367
BspPI GGATC 4 cut(s) 174, 175, 411, 555
BspT107I GGYRCC 1 cut(s) 211
BsrDI GCAATG 2 cut(s) 109, 559
BsrFI RCCGGY 3 cut(s) 86, 362, 572
BssAI RCCGGY 3 cut(s) 86, 362, 572
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 5 cut(s) 167, 179, 403, 547, 638
BssNI GRCGYC 2 cut(s) 212, 395
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 2 cut(s) 9, 275
Bst6I CTCTTC 2 cut(s) 492, 599
BstACI GRCGYC 2 cut(s) 212, 395
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 2 cut(s) 364, 479
BstFNI CGCG 2 cut(s) 234, 477
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 3 cut(s) 214, 236, 477
BstKTI GATC 5 cut(s) 170, 182, 406, 550, 641
BstMBI GATC 5 cut(s) 167, 179, 403, 547, 638
BstMWI GCNNNNNNNGC 8 cut(s) 99, 220, 242, 353, 356, 359, 445, 448
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 3 cut(s) 158, 249, 371
BstSFI CTRYAG 1 cut(s) 695
BstUI CGCG 2 cut(s) 234, 477
BstV1I GCAGC 8 cut(s) 232, 346, 365, 451, 454, 457, 460, 642
BstX2I RGATCY 2 cut(s) 167, 179
BstYI RGATCY 2 cut(s) 167, 179
BsuRI GGCC 2 cut(s) 46, 366
BtsI GCAGTG 1 cut(s) 688
BtsIMutI CAGTG 1 cut(s) 688
Cac8I GCNNGC 2 cut(s) 364, 479
CaiI CAGNNNCTG 1 cut(s) 359
CciI TCATGA 1 cut(s) 286
CfoI GCGC 3 cut(s) 214, 236, 477
Cfr10I RCCGGY 3 cut(s) 86, 362, 572
Cfr13I GGNCC 1 cut(s) 365
CseI GACGC 1 cut(s) 403
CviAII CATG 6 cut(s) 31, 281, 287, 319, 325, 488
DinI GGCGCC 1 cut(s) 213
DpnI GATC 5 cut(s) 169, 181, 405, 549, 640
DpnII GATC 5 cut(s) 167, 179, 403, 547, 638
DriI GACNNNNNGTC 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 44
Eam1104I CTCTTC 2 cut(s) 492, 599
Eam1105I GACNNNNNGTC 1 cut(s) 151
EarI CTCTTC 2 cut(s) 492, 599
EciI GGCGGA 1 cut(s) 518
Eco24I GRGCYC 1 cut(s) 258
Eco57I CTGAAG 3 cut(s) 37, 503, 516
Eco88I CYCGRG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 258
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
FaeI CATG 6 cut(s) 34, 284, 290, 322, 328, 491
FaiI YATR 7 cut(s) 32, 282, 288, 320, 326, 489, 703
FalI AAGNNNNNCTT 2 cut(s) 596, 628
FatI CATG 6 cut(s) 30, 280, 286, 318, 324, 487
FauI CCCGC 1 cut(s) 156
FblI GTMKAC 1 cut(s) 132
FriOI GRGCYC 1 cut(s) 258
GlaI GCGC 3 cut(s) 213, 235, 476
GsuI CTGGAG 1 cut(s) 261
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 2 cut(s) 46, 366
HapII CCGG 7 cut(s) 47, 87, 175, 251, 363, 372, 573
HgaI GACGC 1 cut(s) 403
HhaI GCGC 3 cut(s) 214, 236, 477
Hin1I GRCGYC 2 cut(s) 212, 395
Hin1II CATG 6 cut(s) 34, 284, 290, 322, 328, 491
Hin6I GCGC 3 cut(s) 212, 234, 475
HinP1I GCGC 3 cut(s) 212, 234, 475
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 3 cut(s) 191, 491, 609
HpaII CCGG 7 cut(s) 47, 87, 175, 251, 363, 372, 573
HphI GGTGA 5 cut(s) 164, 269, 473, 613, 658
Hpy166II GTNNAC 2 cut(s) 133, 330
Hpy188I TCNGA 3 cut(s) 403, 496, 670
Hpy188III TCNNGA 3 cut(s) 206, 240, 287
Hpy8I GTNNAC 2 cut(s) 133, 330
Hpy99I CGWCG 5 cut(s) 137, 397, 403, 425, 428
HpyAV CCTTC 1 cut(s) 399
HpyCH4III ACNGT 2 cut(s) 9, 275
HpyCH4V TGCA 6 cut(s) 80, 220, 516, 557, 632, 658
HpyF10VI GCNNNNNNNGC 8 cut(s) 99, 220, 242, 353, 356, 359, 445, 448
Hsp92I GRCGYC 2 cut(s) 212, 395
Hsp92II CATG 6 cut(s) 34, 284, 290, 322, 328, 491
HspAI GCGC 3 cut(s) 212, 234, 475
KasI GGCGCC 1 cut(s) 211
KroI GCCGGC 1 cut(s) 362
KroNI GCCGGC 1 cut(s) 364
Kzo9I GATC 5 cut(s) 167, 179, 403, 547, 638
LmnI GCTCC 2 cut(s) 242, 253
Lsp1109I GCAGC 8 cut(s) 232, 346, 365, 451, 454, 457, 460, 642
LweI GCATC 1 cut(s) 566
MaeIII GTNAC 4 cut(s) 9, 275, 461, 685
MalI GATC 5 cut(s) 169, 181, 405, 549, 640
MboI GATC 5 cut(s) 167, 179, 403, 547, 638
MboII GAAGA 3 cut(s) 481, 509, 616
MflI RGATCY 2 cut(s) 167, 179
MhlI GDGCHC 3 cut(s) 247, 258, 383
MluCI AATT 2 cut(s) 518, 585
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 8 cut(s) 121, 152, 202, 247, 493, 517, 642, 700
Mph1103I ATGCAT 1 cut(s) 559
MroNI GCCGGC 1 cut(s) 362
MseI TTAA 2 cut(s) 417, 706
MslI CAYNNNNRTG 2 cut(s) 285, 323
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 7 cut(s) 47, 87, 175, 251, 363, 372, 573
MspR9I CCNGG 3 cut(s) 160, 251, 373
Mva1269I GAATGC 2 cut(s) 233, 518
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 2 cut(s) 234, 477
MwoI GCNNNNNNNGC 8 cut(s) 99, 220, 242, 353, 356, 359, 445, 448
NaeI GCCGGC 1 cut(s) 364
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 2 cut(s) 251, 373
NdeII GATC 5 cut(s) 167, 179, 403, 547, 638
NgoMIV GCCGGC 1 cut(s) 362
NlaIII CATG 6 cut(s) 34, 284, 290, 322, 328, 491
NlaIV GGNNCC 4 cut(s) 24, 213, 255, 367
NmuCI GTSAC 2 cut(s) 275, 461
NsiI ATGCAT 1 cut(s) 559
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 1 cut(s) 286
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 389
PctI GAATGC 2 cut(s) 233, 518
PdiI GCCGGC 1 cut(s) 364
PfeI GAWTC 2 cut(s) 491, 609
PflFI GACNNNGTC 1 cut(s) 397
PleI GAGTC 1 cut(s) 185
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 4 cut(s) 24, 213, 255, 367
PspPI GGNCC 1 cut(s) 365
PstNI CAGNNNCTG 1 cut(s) 359
PsuI RGATCY 2 cut(s) 167, 179
PsyI GACNNNGTC 1 cut(s) 397
RseI CAYNNNNRTG 2 cut(s) 285, 323
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 417, 706
Sau3AI GATC 5 cut(s) 167, 179, 403, 547, 638
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 3 cut(s) 160, 251, 373
SduI GDGCHC 3 cut(s) 247, 258, 383
SetI ASST 8 cut(s) 24, 302, 453, 483, 657, 675, 692, 702
SfaNI GCATC 1 cut(s) 566
SfcI CTRYAG 1 cut(s) 695
SfoI GGCGCC 1 cut(s) 213
Sfr274I CTCGAG 1 cut(s) 206
SgrAI CRCCGGYG 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 2 cut(s) 285, 323
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 2 cut(s) 518, 585
SsiI CCGC 8 cut(s) 90, 108, 163, 232, 348, 351, 357, 503
SspDI GGCGCC 1 cut(s) 211
StyD4I CCNGG 3 cut(s) 158, 249, 371
TaaI ACNGT 2 cut(s) 9, 275
TaqI TCGA 6 cut(s) 132, 144, 207, 294, 383, 392
TasI AATT 2 cut(s) 518, 585
TauI GCSGC 6 cut(s) 93, 110, 234, 350, 353, 359
TfiI GAWTC 2 cut(s) 491, 609
Tru1I TTAA 2 cut(s) 417, 706
Tru9I TTAA 2 cut(s) 417, 706
TscAI CASTG 1 cut(s) 688
TseFI GTSAC 2 cut(s) 275, 461
TseI GCWGC 8 cut(s) 220, 353, 359, 439, 442, 445, 448, 655
Tsp45I GTSAC 2 cut(s) 275, 461
TspDTI ATGAA 5 cut(s) 275, 307, 354, 444, 504
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 1 cut(s) 688
Tth111I GACNNNGTC 1 cut(s) 397
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.