Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004826

Physical Location & Seq

Genomic Coordinates Forward (+)

18495215 .. 18496327

Gene Structure 1113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAGCTCATCTGATTCCGTTAATAACGGCGTTAACTCACGGATGTACTTCCGTAACCCGAGTTTCAGCAACGTTATCTTAAACGATAACTGGAGCGACTTGCCGTTAAGTGTCGACGATTCTCAAGACATGGCTATTTACAACACTCTCCGTGATGCCGTTAGCTCCGGCTGGACACCCTCCGTTCCTCCCGTTACCTCTCCGGCGGAGGAAAATAAGCCTCCGGCGACGAAGGCGAGTGGCTCACACGCGCCGAGGCAGAAGGGGATGCAGTACAGAGGAGTGAGGAGGAGGCCGTGGGGGAAATTCGCGGCGGAGATTAGGGATCCGAAGAAGAACGGAGCTAGGGTTTGGCTCGGGACTTACGAGACGCCGGAGGACGCGGCGGTGGCGTACGACCGAGCGGCGTTTCAGCTCAGAGGATCGAAAGCTAAGCTGAATTTTCCGCATTTGATTGGTTCTTGTAAGTATGAGCCGGTTAGGATTAGGCCTCGCCGTCGCTCGCCGGAACCGTCAGTCTCCGATCAGTTAACGTCGGAGCAGAAGAGGGAAAGCCACGTGGATGACGGCGAGTCTAGTTTGGTTGTACCGGAGTTGGATTTCACGGTGGATCAGTTTTACTTCGATGGTAGTTTATTAATGGACCAATCAGAATGTTCTTATTCTGATAATCGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

226

Amino Acids

25.35

Weight (kDa)

6.33

Isoelectric Point (pI)

64.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	91 - 141	8.3e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44840
fragaria_vesca	FvH4_7g10030 FvH4_7g10040
malus_domestica	MD02G1213600.v1.1 MD07G1104900.v1.1 MD07G1105900.v1.1
prunus_persica	Prupe.2G129300_v2.0.a1 Prupe.2G129500_v2.0.a1 Prupe.2G129700_v2.0.a1
pyrus_communis	pycom07g09030
rosa_chinensis	RchiOBHm_Chr1g0347621 RchiOBHm_Chr1g0347631
rosa_laevigata	RLG00000028727 RLG00000028728
rosa_multiflora	Rmu_sc0006452.1_g000003 Rmu_sc0006452.1_g000008 Rmu_sc0010342.1_g000003 Rmu_sc0010342.1_g000008
rosa_roxburghii	Rroxscaffold_4G00307550 Rroxscaffold_4G00307580
rosa_rugosa	Rorug01G0188300 Rorug01G0188300
rosa_samantha	Rh1AG205700 Rh1AG206000 Rh1BG171300 Rh1BG171400 Rh1CG190800 Rh1DG201300 Rh1DG201400
rosa_wichuraiana	Rw0G001810 Rw1G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	3 cut(s)	251, 311, 383
AciI	CCGC	7 cut(s)	206, 311, 314, 383, 386, 404, 446
AclI	AACGTT	1 cut(s)	72
AclWI	GGATC	4 cut(s)	320, 333, 430, 618
AcsI	RAATTY	2 cut(s)	305, 439
AcvI	CACGTG	1 cut(s)	559
AcyI	GRCGYC	1 cut(s)	371
AfaI	GTAC	4 cut(s)	47, 275, 395, 588
AhdI	GACNNNNNGTC	1 cut(s)	571
AluBI	AGCT	6 cut(s)	6, 165, 344, 415, 431, 436
AluI	AGCT	6 cut(s)	6, 165, 344, 415, 431, 436
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	362, 523
AlwI	GGATC	4 cut(s)	320, 333, 430, 618
Ama87I	CYCGRG	2 cut(s)	58, 356
AoxI	GGCC	2 cut(s)	293, 488
ApoI	RAATTY	2 cut(s)	305, 439
AseI	ATTAAT	1 cut(s)	638
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	643
AvaI	CYCGRG	2 cut(s)	58, 356
AvaII	GGWCC	1 cut(s)	643
BamHI	GGATCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	8
BbrPI	CACGTG	1 cut(s)	559
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	620
BceAI	ACGGC	6 cut(s)	43, 88, 143, 280, 480, 583
BcoDI	GTCTC	2 cut(s)	362, 523
BfaI	CTAG	2 cut(s)	345, 576
BisI	GCNGC	3 cut(s)	312, 384, 405
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	3 cut(s)	313, 385, 406
Bme18I	GGWCC	1 cut(s)	643
BmeRI	GACNNNNNGTC	1 cut(s)	571
BmeT110I	CYCGRG	2 cut(s)	58, 356
BmgT120I	GGNCC	1 cut(s)	643
BmiI	GGNNCC	2 cut(s)	327, 510
BmsI	GCATC	2 cut(s)	145, 258
BpmI	CTGGAG	1 cut(s)	112
Bpu1102I	GCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	559
BsaHI	GRCGYC	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	254, 296
BsaWI	WCCGGW	1 cut(s)	589
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bse118I	RCCGGY	1 cut(s)	475
Bse1I	ACTGG	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	254, 296
BseGI	GGATG	3 cut(s)	48, 273, 568
BseMII	CTCAG	1 cut(s)	430
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	3 cut(s)	294, 301, 304
Bsh1236I	CGCG	3 cut(s)	251, 311, 383
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	2 cut(s)	295, 490
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	2 cut(s)	58, 356
BsiSI	CCGG	7 cut(s)	168, 203, 224, 374, 476, 506, 590
BsiWI	CGTACG	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	373
BsmAI	GTCTC	2 cut(s)	362, 523
BsmBI	CGTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	2 cut(s)	295, 490
BsoBI	CYCGRG	2 cut(s)	58, 356
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	325, 422, 523, 610
Bsp1720I	GCTNAGC	1 cut(s)	432
BspACI	CCGC	7 cut(s)	206, 311, 314, 383, 386, 404, 446
BspANI	GGCC	2 cut(s)	295, 490
BspCNI	CTCAG	1 cut(s)	429
BspFNI	CGCG	3 cut(s)	251, 311, 383
BspLI	GGNNCC	2 cut(s)	327, 510
BspPI	GGATC	4 cut(s)	320, 333, 430, 618
BsrBI	CCGCTC	1 cut(s)	404
BsrFI	RCCGGY	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	475
BssECI	CCNNGG	2 cut(s)	254, 296
BssMI	GATC	4 cut(s)	325, 422, 523, 610
BssNI	GRCGYC	1 cut(s)	371
Bst4CI	ACNGT	2 cut(s)	513, 607
Bst6I	CTCTTC	1 cut(s)	539
BstACI	GRCGYC	1 cut(s)	371
BstBAI	YACGTR	1 cut(s)	559
BstC8I	GCNNGC	1 cut(s)	503
BstDEI	CTNAG	2 cut(s)	416, 432
BstDSI	CCRYGG	1 cut(s)	296
BstF5I	GGATG	3 cut(s)	48, 273, 568
BstFNI	CGCG	3 cut(s)	251, 311, 383
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	4 cut(s)	328, 425, 526, 613
BstMAI	GTCTC	2 cut(s)	362, 523
BstMBI	GATC	4 cut(s)	325, 422, 523, 610
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 389
BstUI	CGCG	3 cut(s)	251, 311, 383
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	295, 490
BtgI	CCRYGG	1 cut(s)	296
BtsCI	GGATG	3 cut(s)	48, 273, 568
Cac8I	GCNNGC	1 cut(s)	503
CfoI	GCGC	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	475
Cfr13I	GGNCC	1 cut(s)	643
CseI	GACGC	2 cut(s)	379, 389
Csp6I	GTAC	4 cut(s)	46, 274, 394, 587
CviAII	CATG	1 cut(s)	130
CviQI	GTAC	4 cut(s)	46, 274, 394, 587
DdeI	CTNAG	2 cut(s)	416, 432
DpnI	GATC	4 cut(s)	327, 424, 525, 612
DpnII	GATC	4 cut(s)	325, 422, 523, 610
DriI	GACNNNNNGTC	1 cut(s)	571
Eam1104I	CTCTTC	1 cut(s)	539
Eam1105I	GACNNNNNGTC	1 cut(s)	571
EarI	CTCTTC	1 cut(s)	539
EciI	GGCGGA	2 cut(s)	221, 329
Ecl136II	GAGCTC	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	490
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	643
Eco53kI	GAGCTC	1 cut(s)	6
Eco72I	CACGTG	1 cut(s)	559
Eco88I	CYCGRG	2 cut(s)	58, 356
EcoICRI	GAGCTC	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	8
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	1 cut(s)	133
FaiI	YATR	3 cut(s)	131, 471, 679
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	3 cut(s)	312, 384, 405
FokI	GGATG	3 cut(s)	55, 280, 575
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	312, 384, 405
FspBI	CTAG	2 cut(s)	345, 576
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	3 cut(s)	312, 384, 405
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	2 cut(s)	295, 490
HapII	CCGG	7 cut(s)	168, 203, 224, 374, 476, 506, 590
HgaI	GACGC	2 cut(s)	379, 389
HhaI	GCGC	1 cut(s)	253
Hin1I	GRCGYC	1 cut(s)	371
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	3 cut(s)	34, 115, 531
HindII	GTYRAC	3 cut(s)	34, 115, 531
HinfI	GANTC	3 cut(s)	14, 119, 572
HpaI	GTTAAC	2 cut(s)	34, 531
HpaII	CCGG	7 cut(s)	168, 203, 224, 374, 476, 506, 590
Hpy166II	GTNNAC	3 cut(s)	34, 115, 531
Hpy188I	TCNGA	8 cut(s)	13, 330, 419, 523, 538, 652, 667, 675
Hpy188III	TCNNGA	2 cut(s)	125, 358
Hpy8I	GTNNAC	3 cut(s)	34, 115, 531
Hpy99I	CGWCG	4 cut(s)	119, 232, 501, 538
HpyAV	CCTTC	2 cut(s)	226, 256
HpyCH4III	ACNGT	2 cut(s)	513, 607
HpyCH4IV	ACGT	3 cut(s)	72, 533, 558
HpyCH4V	TGCA	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 389
HpyF3I	CTNAG	2 cut(s)	416, 432
HpySE526I	ACGT	3 cut(s)	72, 533, 558
Hsp92I	GRCGYC	1 cut(s)	371
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	1 cut(s)	251
KspAI	GTTAAC	2 cut(s)	34, 531
Kzo9I	GATC	4 cut(s)	325, 422, 523, 610
LmnI	GCTCC	4 cut(s)	93, 170, 341, 538
LpnPI	CCDG	9 cut(s)	76, 157, 181, 216, 237, 387, 489, 519, 603
LweI	GCATC	2 cut(s)	145, 258
MaeI	CTAG	2 cut(s)	345, 576
MaeII	ACGT	3 cut(s)	72, 533, 558
MaeIII	GTNAC	2 cut(s)	53, 193
MalI	GATC	4 cut(s)	327, 424, 525, 612
MbiI	CCGCTC	1 cut(s)	404
MboI	GATC	4 cut(s)	325, 422, 523, 610
MboII	GAAGA	3 cut(s)	343, 346, 556
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	305, 439
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	2 cut(s)	516, 576
MseI	TTAA	6 cut(s)	21, 33, 80, 107, 530, 638
MslI	CAYNNNNRTG	1 cut(s)	561
MspI	CCGG	7 cut(s)	168, 203, 224, 374, 476, 506, 590
MvnI	CGCG	3 cut(s)	251, 311, 383
MwoI	GCNNNNNNNGC	2 cut(s)	233, 389
NdeII	GATC	4 cut(s)	325, 422, 523, 610
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	2 cut(s)	327, 510
NmeAIII	GCCGAG	1 cut(s)	279
PceI	AGGCCT	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	2 cut(s)	363, 509
PfeI	GAWTC	2 cut(s)	14, 119
Pfl23II	CGTACG	1 cut(s)	393
PkrI	GCNGC	3 cut(s)	313, 385, 406
PleI	GAGTC	1 cut(s)	580
PmaCI	CACGTG	1 cut(s)	559
PmlI	CACGTG	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	580
Ppu21I	YACGTR	1 cut(s)	559
PshBI	ATTAAT	1 cut(s)	638
Psp124BI	GAGCTC	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	72
PspCI	CACGTG	1 cut(s)	559
PspLI	CGTACG	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	327, 510
PspPI	GGNCC	1 cut(s)	643
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	4 cut(s)	47, 275, 395, 588
RsaNI	GTAC	4 cut(s)	46, 274, 394, 587
RseI	CAYNNNNRTG	1 cut(s)	561
SacI	GAGCTC	1 cut(s)	8
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	6 cut(s)	21, 33, 80, 107, 530, 638
SatI	GCNGC	3 cut(s)	312, 384, 405
Sau3AI	GATC	4 cut(s)	325, 422, 523, 610
Sau96I	GGNCC	1 cut(s)	643
SchI	GAGTC	1 cut(s)	581
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	145, 258
SinI	GGWCC	1 cut(s)	643
SmiMI	CAYNNNNRTG	1 cut(s)	561
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	2 cut(s)	305, 439
SseBI	AGGCCT	1 cut(s)	490
SsiI	CCGC	7 cut(s)	206, 311, 314, 383, 386, 404, 446
SspMI	CTAG	2 cut(s)	345, 576
SstI	GAGCTC	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	490
TaaI	ACNGT	2 cut(s)	513, 607
TaiI	ACGT	3 cut(s)	75, 536, 561
TaqI	TCGA	3 cut(s)	114, 425, 624
TaqII	GACCGA	1 cut(s)	414
TasI	AATT	2 cut(s)	305, 439
TatI	WGTACW	2 cut(s)	45, 273
TauI	GCSGC	3 cut(s)	314, 386, 407
TfiI	GAWTC	2 cut(s)	14, 119
Tru1I	TTAA	6 cut(s)	21, 33, 80, 107, 530, 638
Tru9I	TTAA	6 cut(s)	21, 33, 80, 107, 530, 638
TspGWI	ACGGA	6 cut(s)	7, 41, 55, 140, 172, 354
VpaK11BI	GGWCC	1 cut(s)	643
VspI	ATTAAT	1 cut(s)	638
XapI	RAATTY	2 cut(s)	305, 439
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	2 cut(s)	345, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.