FvH4_7g10040

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004826
Physical Location & Seq
Forward (+)
9493707 .. 9494912
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10040.t1

Sequence Viewer

Length: 642 bp
ATGTACGGACAGACAACCCTAGAGTCGGTAGATTCCGACTTGGCTCTTCTTGAATCCATTCGTCAACACCTTCTAGGCGATCATATGGCGCCTCAGGCCGCCCTCTTCGGCGGCGGCGACGTCGACGACATCATCCCCTTGTTTTTCCCCAGCTCCGCTACTGCTTCAACCTGCATGAGTGGGTTTTTTACCACAGAGAACTGGTGGGAATCGGCGCTAAAACCCGAGGACTCTGAAACCGAAGCTGTAAGTACCCCAGTGGATGACGTCGAGATTAAACTGAGGGAGCAAGCTCGTGTTGCGCATGAGGTGCACGCGCCAAGGGCGGCGAGGCATTTCAGGGGAGTGAGGAGGAGGCCATGGGGGAAGTACGCGGCGGAGATAAGAGATCCGGCGAAGAACGGCGCGCGAGTGTGGCTTGGGACTTACGAGACTCCTGAAGACGCCGGGCTGGCTTATGACCGAGCTGCTTTCAAGCTGCGAGGCCGTAAAGCTAAGCTCAACTTTCCTCACTTGATTGGCTCGAACAACGTTGAGCCGGTTAGGGTTACCCCGAAGCGGCGGCGCTCGCCGGAGCAGTCCTCTACGTCGCCCTCGTCGGCATCGGAGGACAGCGAGTCTCCCAAGTCAAAGATTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AP2

Protein Analysis

214

Amino Acids

23.62

Weight (kDa)

6.61

Isoelectric Point (pI)

65.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 112 - 162 5.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 123, 270
Acc16I TGCGCA 1 cut(s) 303
Acc36I ACCTGC 1 cut(s) 179
AccB1I GGYRCC 1 cut(s) 88
AccI GTMKAC 1 cut(s) 123
AccII CGCG 4 cut(s) 317, 374, 407, 409
AciI CCGC 9 cut(s) 99, 111, 114, 156, 326, 374, 377, 559, 562
AclI AACGTT 1 cut(s) 531
AclWI GGATC 1 cut(s) 383
AcuI CTGAAG 1 cut(s) 459
AcyI GRCGYC 4 cut(s) 89, 120, 267, 444
AfaI GTAC 3 cut(s) 5, 253, 371
AfiI CCNNNNNNNGG 2 cut(s) 25, 558
AgsI TTSAA 3 cut(s) 53, 168, 475
AhdI GACNNNNNGTC 1 cut(s) 616
AluBI AGCT 7 cut(s) 153, 245, 293, 467, 478, 494, 499
AluI AGCT 7 cut(s) 153, 245, 293, 467, 478, 494, 499
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 425, 624
Alw44I GTGCAC 1 cut(s) 311
AlwI GGATC 1 cut(s) 383
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 3 cut(s) 96, 356, 484
ApaLI GTGCAC 1 cut(s) 311
ApeKI GCWGC 2 cut(s) 467, 478
Asp700I GAANNNNTTC 1 cut(s) 57
AspLEI GCGC 7 cut(s) 91, 217, 304, 319, 407, 409, 567
AsuC2I CCSGG 1 cut(s) 448
AvaI CYCGRG 1 cut(s) 224
AxyI CCTNAGG 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 315
BanI GGYRCC 1 cut(s) 88
BauI CACGAG 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 2 cut(s) 454, 465
BceAI ACGGC 2 cut(s) 418, 471
BcnI CCSGG 1 cut(s) 448
BcoDI GTCTC 2 cut(s) 425, 624
BfaI CTAG 2 cut(s) 20, 74
BfoI RGCGCY 3 cut(s) 92, 218, 568
BfuAI ACCTGC 1 cut(s) 179
BglI GCCNNNNNGGC 1 cut(s) 452
BisI GCNGC 9 cut(s) 99, 112, 115, 327, 375, 468, 479, 560, 563
BlpI GCTNAGC 1 cut(s) 495
BlsI GCNGC 9 cut(s) 100, 113, 116, 328, 376, 469, 480, 561, 564
Bme1390I CCNGG 1 cut(s) 448
BmeRI GACNNNNNGTC 1 cut(s) 616
BmeT110I CYCGRG 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 448
BmrI ACTGGG 1 cut(s) 251
BmsI GCATC 1 cut(s) 611
BmuI ACTGGG 1 cut(s) 251
BpiI GAAGAC 1 cut(s) 447
BplI GAGNNNNNCTC 2 cut(s) 566, 598
Bpu1102I GCTNAGC 1 cut(s) 495
BpuMI CCSGG 1 cut(s) 448
BsaHI GRCGYC 4 cut(s) 89, 120, 267, 444
BsaJI CCNNGG 3 cut(s) 225, 320, 359
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 558
Bse118I RCCGGY 1 cut(s) 538
Bse1I ACTGG 2 cut(s) 206, 257
Bse21I CCTNAGG 1 cut(s) 93
BseDI CCNNGG 3 cut(s) 225, 320, 359
BseGI GGATG 2 cut(s) 132, 268
BseLI CCNNNNNNNGG 2 cut(s) 25, 558
BseMII CTCAG 2 cut(s) 107, 272
BseNI ACTGG 2 cut(s) 206, 257
BsePI GCGCGC 1 cut(s) 405
BseRI GAGGAG 2 cut(s) 364, 367
BseSI GKGCMC 1 cut(s) 315
BseXI GCAGC 2 cut(s) 454, 465
BseYI CCCAGC 1 cut(s) 149
Bsh1236I CGCG 4 cut(s) 317, 374, 407, 409
BshFI GGCC 3 cut(s) 98, 358, 486
BshNI GGYRCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 4 cut(s) 392, 447, 539, 572
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 2 cut(s) 25, 558
BsmAI GTCTC 2 cut(s) 425, 624
BsmFI GGGAC 1 cut(s) 436
BsnI GGCC 3 cut(s) 98, 358, 486
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 2 cut(s) 79, 388
Bsp1720I GCTNAGC 1 cut(s) 495
Bsp19I CCATGG 1 cut(s) 359
BspACI CCGC 9 cut(s) 99, 111, 114, 156, 326, 374, 377, 559, 562
BspANI GGCC 3 cut(s) 98, 358, 486
BspCNI CTCAG 2 cut(s) 106, 273
BspFNI CGCG 4 cut(s) 317, 374, 407, 409
BspLI GGNNCC 1 cut(s) 90
BspMI ACCTGC 1 cut(s) 179
BspPI GGATC 1 cut(s) 383
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 538
BsrI ACTGG 2 cut(s) 206, 257
BssAI RCCGGY 1 cut(s) 538
BssECI CCNNGG 3 cut(s) 225, 320, 359
BssHII GCGCGC 1 cut(s) 405
BssMI GATC 2 cut(s) 79, 388
BssNI GRCGYC 4 cut(s) 89, 120, 267, 444
BssSI CACGAG 1 cut(s) 294
BssT1I CCWWGG 2 cut(s) 320, 359
Bst2BI CACGAG 1 cut(s) 294
Bst6I CTCTTC 2 cut(s) 51, 110
BstACI GRCGYC 4 cut(s) 89, 120, 267, 444
BstAPI GCANNNNNTGC 1 cut(s) 310
BstC8I GCNNGC 5 cut(s) 291, 315, 407, 453, 569
BstDEI CTNAG 3 cut(s) 93, 281, 495
BstDSI CCRYGG 1 cut(s) 359
BstEII GGTNACC 1 cut(s) 547
BstF5I GGATG 2 cut(s) 132, 268
BstFNI CGCG 4 cut(s) 317, 374, 407, 409
BstH2I RGCGCY 3 cut(s) 92, 218, 568
BstHHI GCGC 7 cut(s) 91, 217, 304, 319, 407, 409, 567
BstKTI GATC 2 cut(s) 82, 391
BstMAI GTCTC 2 cut(s) 425, 624
BstMBI GATC 2 cut(s) 79, 388
BstMWI GCNNNNNNNGC 7 cut(s) 95, 299, 310, 323, 415, 452, 568
BstPI GGTNACC 1 cut(s) 547
BstSCI CCNGG 1 cut(s) 446
BstSLI GKGCMC 1 cut(s) 315
BstUI CGCG 4 cut(s) 317, 374, 407, 409
BstV1I GCAGC 2 cut(s) 454, 465
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
Bsu36I CCTNAGG 1 cut(s) 93
BsuRI GGCC 3 cut(s) 98, 358, 486
BtgI CCRYGG 1 cut(s) 359
BtsCI GGATG 2 cut(s) 132, 268
BtsIMutI CAGTG 1 cut(s) 264
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 5 cut(s) 291, 315, 407, 453, 569
CfoI GCGC 7 cut(s) 91, 217, 304, 319, 407, 409, 567
Cfr10I RCCGGY 1 cut(s) 538
CseI GACGC 1 cut(s) 452
Csp6I GTAC 3 cut(s) 4, 252, 370
CviAII CATG 3 cut(s) 175, 305, 360
CviQI GTAC 3 cut(s) 4, 252, 370
DdeI CTNAG 3 cut(s) 93, 281, 495
DinI GGCGCC 1 cut(s) 90
DpnI GATC 2 cut(s) 81, 390
DpnII GATC 2 cut(s) 79, 388
DriI GACNNNNNGTC 1 cut(s) 616
Eam1104I CTCTTC 2 cut(s) 51, 110
Eam1105I GACNNNNNGTC 1 cut(s) 616
EarI CTCTTC 2 cut(s) 51, 110
EciI GGCGGA 1 cut(s) 392
Eco130I CCWWGG 2 cut(s) 320, 359
Eco57I CTGAAG 1 cut(s) 459
Eco81I CCTNAGG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 547
EcoO65I GGTNACC 1 cut(s) 547
EcoT14I CCWWGG 2 cut(s) 320, 359
EgeI GGCGCC 1 cut(s) 90
EheI GGCGCC 1 cut(s) 90
ErhI CCWWGG 2 cut(s) 320, 359
FaeI CATG 3 cut(s) 178, 308, 363
FaiI YATR 6 cut(s) 84, 86, 176, 306, 361, 459
FalI AAGNNNNNCTT 2 cut(s) 488, 520
FaqI GGGAC 1 cut(s) 436
FatI CATG 3 cut(s) 174, 304, 359
FauNDI CATATG 1 cut(s) 84
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 9 cut(s) 99, 112, 115, 327, 375, 468, 479, 560, 563
FokI GGATG 2 cut(s) 119, 275
Fsp4HI GCNGC 9 cut(s) 99, 112, 115, 327, 375, 468, 479, 560, 563
FspBI CTAG 2 cut(s) 20, 74
FspI TGCGCA 1 cut(s) 303
GlaI GCGC 7 cut(s) 90, 216, 303, 318, 406, 408, 566
GluI GCNGC 9 cut(s) 99, 112, 115, 327, 375, 468, 479, 560, 563
GsaI CCCAGC 1 cut(s) 153
HaeII RGCGCY 3 cut(s) 92, 218, 568
HaeIII GGCC 3 cut(s) 98, 358, 486
HapII CCGG 4 cut(s) 392, 447, 539, 572
HgaI GACGC 1 cut(s) 452
HhaI GCGC 7 cut(s) 91, 217, 304, 319, 407, 409, 567
Hin1I GRCGYC 4 cut(s) 89, 120, 267, 444
Hin1II CATG 3 cut(s) 178, 308, 363
Hin6I GCGC 7 cut(s) 89, 215, 302, 317, 405, 407, 565
HinP1I GCGC 7 cut(s) 89, 215, 302, 317, 405, 407, 565
HincII GTYRAC 2 cut(s) 65, 124
HindII GTYRAC 2 cut(s) 65, 124
HinfI GANTC 7 cut(s) 23, 32, 53, 209, 230, 433, 617
HpaII CCGG 4 cut(s) 392, 447, 539, 572
Hpy166II GTNNAC 3 cut(s) 65, 124, 313
Hpy188I TCNGA 3 cut(s) 37, 235, 607
Hpy188III TCNNGA 3 cut(s) 50, 271, 437
Hpy8I GTNNAC 3 cut(s) 65, 124, 313
Hpy99I CGWCG 6 cut(s) 122, 125, 128, 272, 592, 601
HpyAV CCTTC 1 cut(s) 80
HpyCH4IV ACGT 4 cut(s) 120, 267, 531, 587
HpyCH4V TGCA 2 cut(s) 174, 313
HpyF10VI GCNNNNNNNGC 7 cut(s) 95, 299, 310, 323, 415, 452, 568
HpyF3I CTNAG 3 cut(s) 93, 281, 495
HpySE526I ACGT 4 cut(s) 120, 267, 531, 587
Hsp92I GRCGYC 4 cut(s) 89, 120, 267, 444
Hsp92II CATG 3 cut(s) 178, 308, 363
HspAI GCGC 7 cut(s) 89, 215, 302, 317, 405, 407, 565
KasI GGCGCC 1 cut(s) 88
Kzo9I GATC 2 cut(s) 79, 388
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 3 cut(s) 158, 286, 574
Lsp1109I GCAGC 2 cut(s) 454, 465
LweI GCATC 1 cut(s) 611
MaeI CTAG 2 cut(s) 20, 74
MaeII ACGT 4 cut(s) 120, 267, 531, 587
MaeIII GTNAC 1 cut(s) 547
MalI GATC 2 cut(s) 81, 390
MboI GATC 2 cut(s) 79, 388
MboII GAAGA 4 cut(s) 38, 97, 409, 452
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 315
Mly113I GGCGCC 1 cut(s) 89
MlyI GAGTC 4 cut(s) 32, 224, 427, 626
MmeI TCCRAC 1 cut(s) 60
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 1 cut(s) 276
MspI CCGG 4 cut(s) 392, 447, 539, 572
MspR9I CCNGG 1 cut(s) 448
MvnI CGCG 4 cut(s) 317, 374, 407, 409
MwoI GCNNNNNNNGC 7 cut(s) 95, 299, 310, 323, 415, 452, 568
NarI GGCGCC 1 cut(s) 89
NciI CCSGG 1 cut(s) 448
NcoI CCATGG 1 cut(s) 359
NdeI CATATG 1 cut(s) 84
NdeII GATC 2 cut(s) 79, 388
NlaIII CATG 3 cut(s) 178, 308, 363
NlaIV GGNNCC 1 cut(s) 90
NsbI TGCGCA 1 cut(s) 303
PauI GCGCGC 1 cut(s) 405
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 593
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 3 cut(s) 32, 53, 209
PkrI GCNGC 9 cut(s) 100, 113, 116, 328, 376, 469, 480, 561, 564
PleI GAGTC 4 cut(s) 31, 224, 427, 625
PluTI GGCGCC 1 cut(s) 92
PpsI GAGTC 4 cut(s) 31, 224, 427, 625
Psp1406I AACGTT 1 cut(s) 531
PspEI GGTNACC 1 cut(s) 547
PspFI CCCAGC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 90
PsuI RGATCY 1 cut(s) 388
PteI GCGCGC 1 cut(s) 405
RsaI GTAC 3 cut(s) 5, 253, 371
RsaNI GTAC 3 cut(s) 4, 252, 370
SalI GTCGAC 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 9 cut(s) 99, 112, 115, 327, 375, 468, 479, 560, 563
Sau3AI GATC 2 cut(s) 79, 388
SchI GAGTC 4 cut(s) 32, 224, 427, 626
ScrFI CCNGG 1 cut(s) 448
SduI GDGCHC 1 cut(s) 315
SfaNI GCATC 1 cut(s) 611
SfoI GGCGCC 1 cut(s) 90
SgrDI CGTCGACG 1 cut(s) 122
SsiI CCGC 9 cut(s) 99, 111, 114, 156, 326, 374, 377, 559, 562
SspDI GGCGCC 1 cut(s) 88
SspMI CTAG 2 cut(s) 20, 74
StyD4I CCNGG 1 cut(s) 446
StyI CCWWGG 2 cut(s) 320, 359
TaiI ACGT 4 cut(s) 123, 270, 534, 590
TaqI TCGA 3 cut(s) 123, 270, 524
TaqII GACCGA 1 cut(s) 477
TauI GCSGC 7 cut(s) 101, 114, 117, 329, 377, 562, 565
TfiI GAWTC 3 cut(s) 32, 53, 209
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 1 cut(s) 264
TseI GCWGC 2 cut(s) 467, 478
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 1 cut(s) 264
VneI GTGCAC 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 2 cut(s) 20, 74
ZraI GACGTC 2 cut(s) 121, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.