Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004826

Physical Location & Seq

Genomic Coordinates Reverse (-)

8203864 .. 8204616

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g09030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTATCAAGATATTTGCTTGGAGTTTGATTTTGCTCTTTTGGAGTCGATTCGGCAACACCTTCTTGACGATAATTTTGATACTACTTTTCAGGAATCATCACCAATAGCTTCAGGCAGTCCTTCCCCAATGTACTGCCGAAGTTTAAGTTTCAGCACCCTTTCCTCGACGGAAAGTTGGAGGGACATGCTGTTTAAAGTGGAACTGGAAGACACTAACGAAGTTGTTGGTGCTTTATCTGATGGCACGGACGGGTGGAGTCCGTCATCAGATCACCATTACGTTGATGTTATAGATACCACACCCGTGAAACCGGAGCCTCAGGAGGTTGTCAGAGAAGAGATAGTGGTGGCGCGTGAGACTCACATGCCACCGTCGCGGCAGCACTTTCGGGGAGTGAGGCGGAGGCCGTGGGGGAAGTACGCGGCGGAGATTAGAGATCCCAAGAAGAACGGGGCCAGAATGTGGCTCGGGACTTATGAGACGACTGAGGGTGCGGCATTGGCTTATGACCAAGCTGCTTTTAAGATGCGCGGCTCTAAAGCCAAGCTCAACTTCCCTCACCTTATTGGCTTGGAGGGATGCGAGCCGGTTCTAATAATAGCAAAGCGGCGTGCCCCGGAGTTCTCCACTTCTTCTTCCTCGTCGGAAAGTGGGTCGCCAAAGCCGAAAAGGAGGAATACTGGACTTCGCTCGGTGGCTGAAGCTGAGTCGGGTAGCACAAGCCGGGTTGAGATGGTTGAGAAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

251

Amino Acids

27.95

Weight (kDa)

5.62

Isoelectric Point (pI)

64.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	129 - 180	3e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44840
fragaria_vesca	FvH4_7g10030 FvH4_7g10040
malus_domestica	MD02G1213600.v1.1 MD07G1104900.v1.1 MD07G1105900.v1.1
prunus_persica	Prupe.2G129300_v2.0.a1 Prupe.2G129500_v2.0.a1 Prupe.2G129700_v2.0.a1
pyrus_communis	pycom07g09030
rosa_chinensis	RchiOBHm_Chr1g0347621 RchiOBHm_Chr1g0347631
rosa_laevigata	RLG00000028727 RLG00000028728
rosa_multiflora	Rmu_sc0006452.1_g000003 Rmu_sc0006452.1_g000008 Rmu_sc0010342.1_g000003 Rmu_sc0010342.1_g000008
rosa_roxburghii	Rroxscaffold_4G00307550 Rroxscaffold_4G00307580
rosa_rugosa	Rorug01G0188300 Rorug01G0188300
rosa_samantha	Rh1AG205700 Rh1AG206000 Rh1BG171300 Rh1BG171400 Rh1CG190800 Rh1DG201300 Rh1DG201400
rosa_wichuraiana	Rw0G001810 Rw1G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	465
AccII	CGCG	4 cut(s)	355, 379, 425, 534
AciI	CCGC	7 cut(s)	379, 403, 425, 428, 497, 534, 610
AclWI	GGATC	1 cut(s)	434
AcuI	CTGAAG	2 cut(s)	96, 723
AfaI	GTAC	2 cut(s)	134, 422
AfiI	CCNNNNNNNGG	1 cut(s)	465
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
AleI	CACNNNNGTG	1 cut(s)	305
AluBI	AGCT	5 cut(s)	110, 518, 550, 707, 750
AluI	AGCT	5 cut(s)	110, 518, 550, 707, 750
Alw26I	GTCTC	2 cut(s)	353, 476
AlwI	GGATC	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	2 cut(s)	407, 456
ApeKI	GCWGC	2 cut(s)	382, 518
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	2 cut(s)	355, 534
AspS9I	GGNCC	1 cut(s)	456
AsuC2I	CCSGG	2 cut(s)	620, 728
AsuHPI	GGTGA	3 cut(s)	93, 266, 554
AvaI	CYCGRG	1 cut(s)	470
AxyI	CCTNAGG	1 cut(s)	321
BaeGI	GKGCMC	1 cut(s)	619
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	394, 505
BccI	CCATC	2 cut(s)	236, 730
BceAI	ACGGC	1 cut(s)	394
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BcnI	CCSGG	2 cut(s)	620, 728
BcoDI	GTCTC	2 cut(s)	353, 476
BfaI	CTAG	1 cut(s)	751
BisI	GCNGC	7 cut(s)	380, 383, 426, 498, 519, 535, 611
BlsI	GCNGC	7 cut(s)	381, 384, 427, 499, 520, 536, 612
Bme1390I	CCNGG	2 cut(s)	620, 728
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	2 cut(s)	318, 457
BmrFI	CCNGG	2 cut(s)	620, 728
BmsI	GCATC	2 cut(s)	519, 572
BpiI	GAAGAC	1 cut(s)	216
BpuMI	CCSGG	2 cut(s)	620, 728
BsaJI	CCNNGG	2 cut(s)	410, 618
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse118I	RCCGGY	1 cut(s)	589
Bse1I	ACTGG	2 cut(s)	210, 688
Bse21I	CCTNAGG	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	410, 618
BseGI	GGATG	1 cut(s)	587
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMII	CTCAG	3 cut(s)	335, 480, 699
BseNI	ACTGG	2 cut(s)	210, 688
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	2 cut(s)	394, 505
Bsh1236I	CGCG	4 cut(s)	355, 379, 425, 534
BshFI	GGCC	2 cut(s)	409, 458
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	4 cut(s)	314, 590, 620, 727
BslFI	GGGAC	2 cut(s)	197, 487
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmAI	GTCTC	2 cut(s)	353, 476
BsmBI	CGTCTC	1 cut(s)	476
BsmFI	GGGAC	2 cut(s)	197, 487
BsnI	GGCC	2 cut(s)	409, 458
BsoBI	CYCGRG	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	2 cut(s)	271, 439
BspACI	CCGC	7 cut(s)	379, 403, 425, 428, 497, 534, 610
BspANI	GGCC	2 cut(s)	409, 458
BspCNI	CTCAG	3 cut(s)	334, 481, 700
BspFNI	CGCG	4 cut(s)	355, 379, 425, 534
BspLI	GGNNCC	2 cut(s)	318, 457
BspPI	GGATC	1 cut(s)	434
BspQI	GCTCTTC	1 cut(s)	740
BsrFI	RCCGGY	1 cut(s)	589
BsrI	ACTGG	2 cut(s)	210, 688
BssAI	RCCGGY	1 cut(s)	589
BssECI	CCNNGG	2 cut(s)	410, 618
BssMI	GATC	2 cut(s)	271, 439
Bst4CI	ACNGT	1 cut(s)	375
Bst6I	CTCTTC	2 cut(s)	333, 740
BstC8I	GCNNGC	2 cut(s)	587, 615
BstDEI	CTNAG	3 cut(s)	321, 489, 708
BstDSI	CCRYGG	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	587
BstFNI	CGCG	4 cut(s)	355, 379, 425, 534
BstHHI	GCGC	2 cut(s)	355, 534
BstKTI	GATC	2 cut(s)	274, 442
BstMAI	GTCTC	2 cut(s)	353, 476
BstMBI	GATC	2 cut(s)	271, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	376, 503
BstNSI	RCATGY	2 cut(s)	190, 370
BstSCI	CCNGG	2 cut(s)	618, 726
BstSLI	GKGCMC	1 cut(s)	619
BstUI	CGCG	4 cut(s)	355, 379, 425, 534
BstV1I	GCAGC	2 cut(s)	394, 505
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
Bsu36I	CCTNAGG	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	409, 458
BtgI	CCRYGG	1 cut(s)	410
BtsCI	GGATG	1 cut(s)	587
Cac8I	GCNNGC	2 cut(s)	587, 615
CfoI	GCGC	2 cut(s)	355, 534
Cfr10I	RCCGGY	1 cut(s)	589
Cfr13I	GGNCC	1 cut(s)	456
Csp6I	GTAC	2 cut(s)	133, 421
CviAII	CATG	2 cut(s)	187, 367
CviQI	GTAC	2 cut(s)	133, 421
DdeI	CTNAG	3 cut(s)	321, 489, 708
DpnI	GATC	2 cut(s)	273, 441
DpnII	GATC	2 cut(s)	271, 439
DraI	TTTAAA	1 cut(s)	196
Eam1104I	CTCTTC	2 cut(s)	333, 740
EarI	CTCTTC	2 cut(s)	333, 740
EciI	GGCGGA	2 cut(s)	418, 443
Eco57I	CTGAAG	2 cut(s)	96, 723
Eco81I	CCTNAGG	1 cut(s)	321
Eco88I	CYCGRG	1 cut(s)	470
Esp3I	CGTCTC	1 cut(s)	476
FaeI	CATG	2 cut(s)	190, 370
FaiI	YATR	5 cut(s)	188, 293, 368, 480, 510
FalI	AAGNNNNNCTT	2 cut(s)	539, 571
FaqI	GGGAC	2 cut(s)	197, 487
FatI	CATG	2 cut(s)	186, 366
Fnu4HI	GCNGC	7 cut(s)	380, 383, 426, 498, 519, 535, 611
FokI	GGATG	1 cut(s)	594
Fsp4HI	GCNGC	7 cut(s)	380, 383, 426, 498, 519, 535, 611
FspBI	CTAG	1 cut(s)	751
GlaI	GCGC	2 cut(s)	354, 533
GluI	GCNGC	7 cut(s)	380, 383, 426, 498, 519, 535, 611
HaeIII	GGCC	2 cut(s)	409, 458
HapII	CCGG	4 cut(s)	314, 590, 620, 727
HhaI	GCGC	2 cut(s)	355, 534
Hin1II	CATG	2 cut(s)	190, 370
Hin6I	GCGC	2 cut(s)	353, 532
HinP1I	GCGC	2 cut(s)	353, 532
HinfI	GANTC	6 cut(s)	44, 49, 95, 259, 361, 710
HpaII	CCGG	4 cut(s)	314, 590, 620, 727
HphI	GGTGA	3 cut(s)	93, 266, 554
Hpy188I	TCNGA	4 cut(s)	241, 271, 335, 649
Hpy188III	TCNNGA	5 cut(s)	8, 65, 92, 323, 472
Hpy99I	CGWCG	3 cut(s)	172, 379, 649
HpyAV	CCTTC	2 cut(s)	71, 132
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4IV	ACGT	1 cut(s)	282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	376, 503
HpyF3I	CTNAG	3 cut(s)	321, 489, 708
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	190, 370
HspAI	GCGC	2 cut(s)	353, 532
Kzo9I	GATC	2 cut(s)	271, 439
LguI	GCTCTTC	1 cut(s)	740
LmnI	GCTCC	1 cut(s)	316
Lsp1109I	GCAGC	2 cut(s)	394, 505
LweI	GCATC	2 cut(s)	519, 572
MaeI	CTAG	1 cut(s)	751
MaeII	ACGT	1 cut(s)	282
MalI	GATC	2 cut(s)	273, 441
MboI	GATC	2 cut(s)	271, 439
MboII	GAAGA	5 cut(s)	221, 350, 460, 627, 630
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	1 cut(s)	73
MlyI	GAGTC	4 cut(s)	53, 268, 355, 719
MmeI	TCCRAC	2 cut(s)	158, 627
MseI	TTAA	3 cut(s)	146, 195, 525
MslI	CAYNNNNRTG	1 cut(s)	305
MspI	CCGG	4 cut(s)	314, 590, 620, 727
MspR9I	CCNGG	2 cut(s)	620, 728
MvnI	CGCG	4 cut(s)	355, 379, 425, 534
MwoI	GCNNNNNNNGC	2 cut(s)	376, 503
NciI	CCSGG	2 cut(s)	620, 728
NdeII	GATC	2 cut(s)	271, 439
NlaIII	CATG	2 cut(s)	190, 370
NlaIV	GGNNCC	2 cut(s)	318, 457
NspI	RCATGY	2 cut(s)	190, 370
OliI	CACNNNNGTG	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	740
PcsI	WCGNNNNNNNCGW	1 cut(s)	665
PfeI	GAWTC	2 cut(s)	49, 95
PflMI	CCANNNNNTGG	1 cut(s)	465
PkrI	GCNGC	7 cut(s)	381, 384, 427, 499, 520, 536, 612
PleI	GAGTC	4 cut(s)	52, 267, 355, 718
PpsI	GAGTC	4 cut(s)	52, 267, 355, 718
PspN4I	GGNNCC	2 cut(s)	318, 457
PspPI	GGNCC	1 cut(s)	456
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	2 cut(s)	134, 422
RsaNI	GTAC	2 cut(s)	133, 421
RseI	CAYNNNNRTG	1 cut(s)	305
SapI	GCTCTTC	1 cut(s)	740
SaqAI	TTAA	3 cut(s)	146, 195, 525
SatI	GCNGC	7 cut(s)	380, 383, 426, 498, 519, 535, 611
Sau3AI	GATC	2 cut(s)	271, 439
Sau96I	GGNCC	1 cut(s)	456
SchI	GAGTC	4 cut(s)	53, 268, 355, 719
ScrFI	CCNGG	2 cut(s)	620, 728
SduI	GDGCHC	1 cut(s)	619
SetI	ASST	9 cut(s)	63, 112, 285, 330, 520, 552, 567, 709, 752
SfaNI	GCATC	2 cut(s)	519, 572
SmiMI	CAYNNNNRTG	1 cut(s)	305
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	7 cut(s)	379, 403, 425, 428, 497, 534, 610
SspMI	CTAG	1 cut(s)	751
StyD4I	CCNGG	2 cut(s)	618, 726
TaaI	ACNGT	1 cut(s)	375
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	2 cut(s)	47, 167
TasI	AATT	1 cut(s)	73
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	5 cut(s)	382, 428, 500, 537, 613
TfiI	GAWTC	2 cut(s)	49, 95
Tru1I	TTAA	3 cut(s)	146, 195, 525
Tru9I	TTAA	3 cut(s)	146, 195, 525
TseI	GCWGC	2 cut(s)	382, 518
TspGWI	ACGGA	3 cut(s)	185, 252, 263
Van91I	CCANNNNNTGG	1 cut(s)	465
XceI	RCATGY	2 cut(s)	190, 370
XspI	CTAG	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.