Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004826

Physical Location & Seq

Genomic Coordinates Forward (+)

18660396 .. 18661137

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G129500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTACGGAGAGACAACCCTAGAACTAGAATCTGACTTGGCTTTTCTTGAGTCCATTCGCCACCATCTTCTTGATGATTTGGAGCCTCAGGCAATGAGTTTTACTGGAAATAATGTCCCGGTGATTTTCCCGCTTTTCGTGACGGAGAATGGGTGGGAGTCGTCTCTTAAAACCGAACACGTGGACAACGACGTGCAGGGCATGCTTGGAGCTTTGAATGACGTAAATTACGTCGGATGTGTTGTGTCCGATGACAAGATTGAATTGAAGGAACAAAAAGTGGCGGCGCGTGCTGTTCACCCGCCAAGCGAGGAGAGGCATTATAGAGGTGTGAGAAGGAGGCCGTGGGGGAAGTTCGCTGCGGAGATAAGGGATCCGGCAAAGAACGGCGCGAGAGTATGGCTGGGGACTTACGAGACGCCAGAGGACGCGGGGCTGGCTTATGATCGAGCAGCGTTTAAGCTGCGCGGCTGTAAAGCCAAGCTGAATTTTCCTCACTTGATTGGCTCGAGTAACGTGGAGCCTGTCCGGGTGAACCCTAAGCGGCGCCGCTCGCTTGACCTCTCCTCTTCGTCGTCCTCATCGGATAATGGGTCTCCCAAGCCAAAGCTAAGCAAGGATGGAGTTGATGATAATCACTTGGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

217

Amino Acids

23.97

Weight (kDa)

5.99

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44840
fragaria_vesca	FvH4_7g10030 FvH4_7g10040
malus_domestica	MD02G1213600.v1.1 MD07G1104900.v1.1 MD07G1105900.v1.1
prunus_persica	Prupe.2G129300_v2.0.a1 Prupe.2G129500_v2.0.a1 Prupe.2G129700_v2.0.a1
pyrus_communis	pycom07g09030
rosa_chinensis	RchiOBHm_Chr1g0347621 RchiOBHm_Chr1g0347631
rosa_laevigata	RLG00000028727 RLG00000028728
rosa_multiflora	Rmu_sc0006452.1_g000003 Rmu_sc0006452.1_g000008 Rmu_sc0010342.1_g000003 Rmu_sc0010342.1_g000008
rosa_roxburghii	Rroxscaffold_4G00307550 Rroxscaffold_4G00307580
rosa_rugosa	Rorug01G0188300 Rorug01G0188300
rosa_samantha	Rh1AG205700 Rh1AG206000 Rh1BG171300 Rh1BG171400 Rh1CG190800 Rh1DG201300 Rh1DG201400
rosa_wichuraiana	Rw0G001810 Rw1G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	546
AccBSI	CCGCTC	1 cut(s)	552
AccII	CGCG	4 cut(s)	289, 392, 431, 468
AciI	CCGC	8 cut(s)	131, 284, 302, 362, 431, 468, 544, 550
AclWI	GGATC	2 cut(s)	368, 381
AcsI	RAATTY	1 cut(s)	487
AcvI	CACGTG	1 cut(s)	181
AcyI	GRCGYC	2 cut(s)	419, 547
AfaI	GTAC	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	3 cut(s)	217, 263, 268
AjiI	CACGTC	1 cut(s)	193
AluBI	AGCT	5 cut(s)	212, 463, 484, 610, 647
AluI	AGCT	5 cut(s)	212, 463, 484, 610, 647
Alw26I	GTCTC	4 cut(s)	5, 168, 410, 600
AlwI	GGATC	2 cut(s)	368, 381
Ama87I	CYCGRG	1 cut(s)	508
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	4 cut(s)	359, 452, 463, 644
ApoI	RAATTY	1 cut(s)	487
AspLEI	GCGC	4 cut(s)	289, 392, 468, 549
AsuC2I	CCSGG	2 cut(s)	119, 530
AsuHPI	GGTGA	3 cut(s)	133, 290, 544
AvaI	CYCGRG	1 cut(s)	508
AxyI	CCTNAGG	1 cut(s)	87
BamHI	GGATCC	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	546
BbrPI	CACGTG	1 cut(s)	181
BbvI	GCAGC	3 cut(s)	346, 450, 464
BccI	CCATC	2 cut(s)	72, 614
BceAI	ACGGC	2 cut(s)	328, 403
BcnI	CCSGG	2 cut(s)	119, 530
BcoDI	GTCTC	4 cut(s)	5, 168, 410, 600
BfaI	CTAG	2 cut(s)	20, 26
BfoI	RGCGCY	1 cut(s)	550
BisI	GCNGC	8 cut(s)	285, 360, 453, 464, 469, 545, 550, 645
BlpI	GCTNAGC	1 cut(s)	611
BlsI	GCNGC	8 cut(s)	286, 361, 454, 465, 470, 546, 551, 646
Bme1390I	CCNGG	2 cut(s)	119, 530
BmeT110I	CYCGRG	1 cut(s)	508
BmgBI	CACGTC	1 cut(s)	193
BmiI	GGNNCC	4 cut(s)	84, 375, 522, 548
BmrFI	CCNGG	2 cut(s)	119, 530
Bpu10I	CCTNAGC	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	611
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	2 cut(s)	119, 530
BsaAI	YACGTR	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	633
BsaHI	GRCGYC	2 cut(s)	419, 547
BsaI	GGTCTC	1 cut(s)	600
BsaJI	CCNNGG	1 cut(s)	344
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bse1I	ACTGG	1 cut(s)	109
Bse21I	CCTNAGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	633
BseDI	CCNNGG	1 cut(s)	344
BseGI	GGATG	2 cut(s)	242, 625
BseJI	GATNNNNATC	1 cut(s)	633
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	2 cut(s)	326, 556
BseXI	GCAGC	3 cut(s)	346, 450, 464
BseYI	CCCAGC	1 cut(s)	403
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	4 cut(s)	289, 392, 431, 468
BshFI	GGCC	1 cut(s)	343
BshNI	GGYRCC	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	3 cut(s)	119, 377, 529
BslFI	GGGAC	2 cut(s)	101, 421
BsmAI	GTCTC	4 cut(s)	5, 168, 410, 600
BsmBI	CGTCTC	2 cut(s)	168, 410
BsmFI	GGGAC	2 cut(s)	101, 421
BsnI	GGCC	1 cut(s)	343
Bso31I	GGTCTC	1 cut(s)	600
BsoBI	CYCGRG	1 cut(s)	508
Bsp143I	GATC	2 cut(s)	373, 445
Bsp1720I	GCTNAGC	1 cut(s)	611
BspACI	CCGC	8 cut(s)	131, 284, 302, 362, 431, 468, 544, 550
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	1 cut(s)	100
BspFNI	CGCG	4 cut(s)	289, 392, 431, 468
BspLI	GGNNCC	4 cut(s)	84, 375, 522, 548
BspPI	GGATC	2 cut(s)	368, 381
BspT107I	GGYRCC	1 cut(s)	546
BspTNI	GGTCTC	1 cut(s)	600
BsrBI	CCGCTC	1 cut(s)	552
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	344
BssMI	GATC	2 cut(s)	373, 445
BssNI	GRCGYC	2 cut(s)	419, 547
Bst6I	CTCTTC	1 cut(s)	574
BstACI	GRCGYC	2 cut(s)	419, 547
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstBAI	YACGTR	1 cut(s)	181
BstC8I	GCNNGC	4 cut(s)	203, 291, 438, 554
BstDEI	CTNAG	3 cut(s)	87, 540, 611
BstDSI	CCRYGG	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	242, 625
BstFNI	CGCG	4 cut(s)	289, 392, 431, 468
BstH2I	RGCGCY	1 cut(s)	550
BstHHI	GCGC	4 cut(s)	289, 392, 468, 549
BstKTI	GATC	2 cut(s)	376, 448
BstMAI	GTCTC	4 cut(s)	5, 168, 410, 600
BstMBI	GATC	2 cut(s)	373, 445
BstMWI	GCNNNNNNNGC	4 cut(s)	202, 290, 437, 553
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	117, 528
BstUI	CGCG	4 cut(s)	289, 392, 431, 468
BstV1I	GCAGC	3 cut(s)	346, 450, 464
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	344
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	242, 625
Cac8I	GCNNGC	4 cut(s)	203, 291, 438, 554
CfoI	GCGC	4 cut(s)	289, 392, 468, 549
CseI	GACGC	2 cut(s)	427, 437
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	202
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	3 cut(s)	87, 540, 611
DinI	GGCGCC	1 cut(s)	548
DpnI	GATC	2 cut(s)	375, 447
DpnII	GATC	2 cut(s)	373, 445
Eam1104I	CTCTTC	1 cut(s)	574
EarI	CTCTTC	1 cut(s)	574
Eco31I	GGTCTC	1 cut(s)	600
Eco72I	CACGTG	1 cut(s)	181
Eco81I	CCTNAGG	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	508
EgeI	GGCGCC	1 cut(s)	548
EheI	GGCGCC	1 cut(s)	548
Esp3I	CGTCTC	2 cut(s)	168, 410
FaeI	CATG	1 cut(s)	205
FaiI	YATR	4 cut(s)	203, 324, 400, 444
FaqI	GGGAC	2 cut(s)	101, 421
FatI	CATG	1 cut(s)	201
FauI	CCCGC	3 cut(s)	138, 309, 424
Fnu4HI	GCNGC	8 cut(s)	285, 360, 453, 464, 469, 545, 550, 645
FokI	GGATG	2 cut(s)	249, 632
Fsp4HI	GCNGC	8 cut(s)	285, 360, 453, 464, 469, 545, 550, 645
FspBI	CTAG	2 cut(s)	20, 26
GlaI	GCGC	4 cut(s)	288, 391, 467, 548
GluI	GCNGC	8 cut(s)	285, 360, 453, 464, 469, 545, 550, 645
GsaI	CCCAGC	1 cut(s)	407
HaeII	RGCGCY	1 cut(s)	550
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	3 cut(s)	119, 377, 529
HgaI	GACGC	2 cut(s)	427, 437
HhaI	GCGC	4 cut(s)	289, 392, 468, 549
Hin1I	GRCGYC	2 cut(s)	419, 547
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	4 cut(s)	287, 390, 466, 547
HinP1I	GCGC	4 cut(s)	287, 390, 466, 547
HinfI	GANTC	3 cut(s)	29, 50, 158
HpaII	CCGG	3 cut(s)	119, 377, 529
HphI	GGTGA	3 cut(s)	133, 290, 544
Hpy166II	GTNNAC	3 cut(s)	184, 298, 535
Hpy188I	TCNGA	4 cut(s)	34, 236, 250, 586
Hpy188III	TCNNGA	3 cut(s)	47, 71, 139
Hpy8I	GTNNAC	3 cut(s)	184, 298, 535
Hpy99I	CGWCG	3 cut(s)	194, 236, 577
HpyAV	CCTTC	2 cut(s)	262, 330
HpyCH4IV	ACGT	5 cut(s)	180, 192, 222, 231, 516
HpyCH4V	TGCA	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	4 cut(s)	202, 290, 437, 553
HpyF3I	CTNAG	3 cut(s)	87, 540, 611
HpySE526I	ACGT	5 cut(s)	180, 192, 222, 231, 516
Hsp92I	GRCGYC	2 cut(s)	419, 547
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	4 cut(s)	287, 390, 466, 547
KasI	GGCGCC	1 cut(s)	546
Kzo9I	GATC	2 cut(s)	373, 445
LmnI	GCTCC	3 cut(s)	82, 209, 520
Lsp1109I	GCAGC	3 cut(s)	346, 450, 464
MaeI	CTAG	2 cut(s)	20, 26
MaeII	ACGT	5 cut(s)	180, 192, 222, 231, 516
MaeIII	GTNAC	2 cut(s)	139, 512
MalI	GATC	2 cut(s)	375, 447
MbiI	CCGCTC	1 cut(s)	552
MboI	GATC	2 cut(s)	373, 445
MboII	GAAGA	2 cut(s)	59, 561
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	3 cut(s)	226, 263, 487
Mly113I	GGCGCC	1 cut(s)	547
MlyI	GAGTC	2 cut(s)	59, 167
MmeI	TCCRAC	1 cut(s)	214
MseI	TTAA	2 cut(s)	168, 459
MspI	CCGG	3 cut(s)	119, 377, 529
MspR9I	CCNGG	2 cut(s)	119, 530
MvnI	CGCG	4 cut(s)	289, 392, 431, 468
MwoI	GCNNNNNNNGC	4 cut(s)	202, 290, 437, 553
NarI	GGCGCC	1 cut(s)	547
NciI	CCSGG	2 cut(s)	119, 530
NdeII	GATC	2 cut(s)	373, 445
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	4 cut(s)	84, 375, 522, 548
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	205
PaeI	GCATGC	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	508
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 228
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	8 cut(s)	286, 361, 454, 465, 470, 546, 551, 646
PleI	GAGTC	2 cut(s)	58, 166
PluTI	GGCGCC	1 cut(s)	550
PmaCI	CACGTG	1 cut(s)	181
PmlI	CACGTG	1 cut(s)	181
PpsI	GAGTC	2 cut(s)	58, 166
Ppu21I	YACGTR	1 cut(s)	181
PspCI	CACGTG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	403
PspN4I	GGNNCC	4 cut(s)	84, 375, 522, 548
PspXI	VCTCGAGB	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	168, 459
SatI	GCNGC	8 cut(s)	285, 360, 453, 464, 469, 545, 550, 645
Sau3AI	GATC	2 cut(s)	373, 445
SchI	GAGTC	2 cut(s)	59, 167
ScrFI	CCNGG	2 cut(s)	119, 530
SfoI	GGCGCC	1 cut(s)	548
Sfr274I	CTCGAG	1 cut(s)	508
SlaI	CTCGAG	1 cut(s)	508
SmlI	CTYRAG	2 cut(s)	47, 508
SmoI	CTYRAG	2 cut(s)	47, 508
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	3 cut(s)	226, 263, 487
SsiI	CCGC	8 cut(s)	131, 284, 302, 362, 431, 468, 544, 550
SspDI	GGCGCC	1 cut(s)	546
SspMI	CTAG	2 cut(s)	20, 26
StyD4I	CCNGG	2 cut(s)	117, 528
TaiI	ACGT	5 cut(s)	183, 195, 225, 234, 519
TaqI	TCGA	2 cut(s)	448, 509
TasI	AATT	3 cut(s)	226, 263, 487
TauI	GCSGC	4 cut(s)	287, 471, 547, 552
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	168, 459
Tru9I	TTAA	2 cut(s)	168, 459
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	4 cut(s)	359, 452, 463, 644
Tsp45I	GTSAC	1 cut(s)	139
TspGWI	ACGGA	2 cut(s)	21, 158
XapI	RAATTY	1 cut(s)	487
XceI	RCATGY	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	508
XspI	CTAG	2 cut(s)	20, 26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.