Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004826

Physical Location & Seq

Genomic Coordinates Forward (+)

23387729 .. 23388538

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1213600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTTTGAACATATTTACTTGGAGGCTGACTTTGCTCTTTTGGAGTCGATCCTTCTCGACGACAATTTTGATACTAATTTGCAAGAATCATCGGCGACAGCTTCAGGCAGTCCTCCCCCGATGTACTGCCGGAGTTTAAGCTTCAGCAAACTTTTCTTGACGAAAAGTTGGAGCGACATGCCATTTAAAGTGGAGCTGGAAGACACTAATGACGTTGTTGGTGCTCTGTCTGATGGCACGGACGGGTGGAGTATGTCATCAGATCACCATCACGTTGATGTTATTGAGACCACACCCGCAAAACCGGAGCCTCAGGAGGTTGTCAGGGAAGAGATAGTGGTGGCGCGCGAGACTTGTACACCATTGTTGGGGCAGCACTTCCGGGGAGTGAGGCGGAGGCCATGGGGGAAGTACGCTGCGGAGATTAGGGATCCCAAGAAGAACGGGGCAAGAGTGTGGCTTGGAACTTATGAGACGGCTGAGGGTGCGGCTTTGGCTTACGACCAAGCCGCTTTTAAAATGCGCGGCTCCAAAGCCAAGCTCAATTTCCCTCACCTTATTGGCTCGGGATGCGAGCCGGTTCGGGTAACAGGGAAGCGTCGAGCCCCGGAGGTTTCATCTTCTTCTTCCTCGTCGGATAGTGGGCCGCCGAAGCTGAAAAGGAGAAATAGTGGAGTTGGCTCGGGTGCTGAAGCCAGGTCGGGTAGCACTAGCCGGGTAGAGATGGTTGAGATGAGCCAGCTAGCTGTTGTTGATCAGTGGCTAAGTGATCTTAACACTACAGTGTACTCTATGCCTATAAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

270

Amino Acids

29.61

Weight (kDa)

5.59

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	126 - 177	1.1e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44840
fragaria_vesca	FvH4_7g10030 FvH4_7g10040
malus_domestica	MD02G1213600.v1.1 MD07G1104900.v1.1 MD07G1105900.v1.1
prunus_persica	Prupe.2G129300_v2.0.a1 Prupe.2G129500_v2.0.a1 Prupe.2G129700_v2.0.a1
pyrus_communis	pycom07g09030
rosa_chinensis	RchiOBHm_Chr1g0347621 RchiOBHm_Chr1g0347631
rosa_laevigata	RLG00000028727 RLG00000028728
rosa_multiflora	Rmu_sc0006452.1_g000003 Rmu_sc0006452.1_g000008 Rmu_sc0010342.1_g000003 Rmu_sc0010342.1_g000008
rosa_roxburghii	Rroxscaffold_4G00307550 Rroxscaffold_4G00307580
rosa_rugosa	Rorug01G0188300 Rorug01G0188300
rosa_samantha	Rh1AG205700 Rh1AG206000 Rh1BG171300 Rh1BG171400 Rh1CG190800 Rh1DG201300 Rh1DG201400
rosa_wichuraiana	Rw0G001810 Rw1G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	346, 348, 525
AciI	CCGC	7 cut(s)	297, 394, 419, 488, 510, 525, 647
AclWI	GGATC	3 cut(s)	43, 425, 438
AcuI	CTGAAG	3 cut(s)	87, 127, 711
AfaI	GTAC	4 cut(s)	125, 358, 413, 788
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	695
AjuI	GAANNNNNNNTTGG	2 cut(s)	530, 562
AleI	CACNNNNGTG	1 cut(s)	782
AluBI	AGCT	7 cut(s)	101, 141, 196, 541, 655, 742, 746
AluI	AGCT	7 cut(s)	101, 141, 196, 541, 655, 742, 746
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	3 cut(s)	281, 344, 467
AlwI	GGATC	3 cut(s)	43, 425, 438
Ama87I	CYCGRG	2 cut(s)	565, 682
AoxI	GGCC	2 cut(s)	398, 644
ApeKI	GCWGC	2 cut(s)	373, 416
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AspLEI	GCGC	3 cut(s)	346, 348, 525
AspS9I	GGNCC	1 cut(s)	644
AsuC2I	CCSGG	3 cut(s)	383, 608, 716
AsuHPI	GGTGA	2 cut(s)	257, 545
AsuNHI	GCTAGC	1 cut(s)	742
AvaI	CYCGRG	2 cut(s)	565, 682
AxyI	CCTNAGG	1 cut(s)	312
BamHI	GGATCC	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	607
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	226
BbvCI	CCTCAGC	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	385, 403
BccI	CCATC	3 cut(s)	227, 276, 718
BceAI	ACGGC	1 cut(s)	492
BciT130I	CCWGG	1 cut(s)	697
BclI	TGATCA	1 cut(s)	754
BcnI	CCSGG	3 cut(s)	383, 608, 716
BcoDI	GTCTC	3 cut(s)	281, 344, 467
BfaI	CTAG	2 cut(s)	711, 743
BfmI	CTRYAG	1 cut(s)	780
BisI	GCNGC	6 cut(s)	374, 417, 489, 510, 526, 647
BlsI	GCNGC	6 cut(s)	375, 418, 490, 511, 527, 648
Bme1390I	CCNGG	4 cut(s)	383, 608, 697, 716
BmeT110I	CYCGRG	2 cut(s)	565, 682
BmgT120I	GGNCC	1 cut(s)	644
BmiI	GGNNCC	3 cut(s)	309, 432, 529
BmrFI	CCNGG	4 cut(s)	383, 608, 697, 716
BmsI	GCATC	1 cut(s)	560
BmtI	GCTAGC	1 cut(s)	746
BpiI	GAAGAC	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	480
BpuMI	CCSGG	3 cut(s)	383, 608, 716
BsaBI	GATNNNNATC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	3 cut(s)	382, 401, 606
BsaWI	WCCGGW	1 cut(s)	304
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse118I	RCCGGY	1 cut(s)	577
Bse21I	CCTNAGG	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	697
BseDI	CCNNGG	3 cut(s)	382, 401, 606
BseGI	GGATG	1 cut(s)	575
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMII	CTCAG	2 cut(s)	326, 471
BsePI	GCGCGC	1 cut(s)	344
BseXI	GCAGC	2 cut(s)	385, 403
Bsh1236I	CGCG	3 cut(s)	346, 348, 525
BshFI	GGCC	2 cut(s)	400, 646
BsiHKAI	GWGCWC	1 cut(s)	226
BsiHKCI	CYCGRG	2 cut(s)	565, 682
BsiSI	CCGG	6 cut(s)	130, 305, 382, 578, 608, 715
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	3 cut(s)	281, 344, 467
BsmBI	CGTCTC	1 cut(s)	467
BsnI	GGCC	2 cut(s)	400, 646
Bso31I	GGTCTC	1 cut(s)	281
BsoBI	CYCGRG	2 cut(s)	565, 682
Bsp1286I	GDGCHC	2 cut(s)	226, 607
Bsp1407I	TGTACA	1 cut(s)	356
Bsp143I	GATC	5 cut(s)	48, 262, 430, 754, 769
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	7 cut(s)	297, 394, 419, 488, 510, 525, 647
BspANI	GGCC	2 cut(s)	400, 646
BspCNI	CTCAG	2 cut(s)	325, 472
BspFNI	CGCG	3 cut(s)	346, 348, 525
BspLI	GGNNCC	3 cut(s)	309, 432, 529
BspOI	GCTAGC	1 cut(s)	746
BspPI	GGATC	3 cut(s)	43, 425, 438
BspTNI	GGTCTC	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	577
BsrGI	TGTACA	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	577
BssECI	CCNNGG	3 cut(s)	382, 401, 606
BssHII	GCGCGC	1 cut(s)	344
BssMI	GATC	5 cut(s)	48, 262, 430, 754, 769
BssT1I	CCWWGG	1 cut(s)	401
Bst2UI	CCWGG	1 cut(s)	697
Bst4CI	ACNGT	1 cut(s)	784
Bst6I	CTCTTC	1 cut(s)	324
BstAUI	TGTACA	1 cut(s)	356
BstC8I	GCNNGC	4 cut(s)	346, 575, 740, 744
BstDEI	CTNAG	3 cut(s)	312, 480, 764
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	575
BstFNI	CGCG	3 cut(s)	346, 348, 525
BstHHI	GCGC	3 cut(s)	346, 348, 525
BstKTI	GATC	5 cut(s)	51, 265, 433, 757, 772
BstMAI	GTCTC	3 cut(s)	281, 344, 467
BstMBI	GATC	5 cut(s)	48, 262, 430, 754, 769
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 485, 494, 570, 652
BstNI	CCWGG	1 cut(s)	697
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	4 cut(s)	381, 606, 695, 714
BstSFI	CTRYAG	1 cut(s)	780
BstUI	CGCG	3 cut(s)	346, 348, 525
BstV1I	GCAGC	2 cut(s)	385, 403
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
Bsu36I	CCTNAGG	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	400, 646
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	575
BtsIMutI	CAGTG	2 cut(s)	764, 789
Cac8I	GCNNGC	4 cut(s)	346, 575, 740, 744
CfoI	GCGC	3 cut(s)	346, 348, 525
Cfr10I	RCCGGY	1 cut(s)	577
Cfr13I	GGNCC	1 cut(s)	644
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	4 cut(s)	124, 357, 412, 787
CviAII	CATG	2 cut(s)	178, 402
CviQI	GTAC	4 cut(s)	124, 357, 412, 787
DdeI	CTNAG	3 cut(s)	312, 480, 764
DpnI	GATC	5 cut(s)	50, 264, 432, 756, 771
DpnII	GATC	5 cut(s)	48, 262, 430, 754, 769
DraI	TTTAAA	2 cut(s)	187, 517
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
EciI	GGCGGA	1 cut(s)	409
Eco130I	CCWWGG	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	607
Eco31I	GGTCTC	1 cut(s)	281
Eco57I	CTGAAG	3 cut(s)	87, 127, 711
Eco81I	CCTNAGG	1 cut(s)	312
Eco88I	CYCGRG	2 cut(s)	565, 682
EcoRII	CCWGG	1 cut(s)	695
EcoT14I	CCWWGG	1 cut(s)	401
EcoT38I	GRGCYC	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	401
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	2 cut(s)	181, 405
FaiI	YATR	7 cut(s)	12, 179, 254, 403, 471, 794, 800
FatI	CATG	2 cut(s)	177, 401
FauI	CCCGC	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	6 cut(s)	374, 417, 489, 510, 526, 647
FokI	GGATG	1 cut(s)	582
FriOI	GRGCYC	1 cut(s)	607
Fsp4HI	GCNGC	6 cut(s)	374, 417, 489, 510, 526, 647
FspBI	CTAG	2 cut(s)	711, 743
GlaI	GCGC	3 cut(s)	345, 347, 524
GluI	GCNGC	6 cut(s)	374, 417, 489, 510, 526, 647
HaeIII	GGCC	2 cut(s)	400, 646
HapII	CCGG	6 cut(s)	130, 305, 382, 578, 608, 715
HgaI	GACGC	1 cut(s)	587
HhaI	GCGC	3 cut(s)	346, 348, 525
Hin1II	CATG	2 cut(s)	181, 405
Hin6I	GCGC	3 cut(s)	344, 346, 523
HinP1I	GCGC	3 cut(s)	344, 346, 523
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	2 cut(s)	44, 86
HpaII	CCGG	6 cut(s)	130, 305, 382, 578, 608, 715
HphI	GGTGA	2 cut(s)	257, 545
Hpy166II	GTNNAC	2 cut(s)	359, 787
Hpy188I	TCNGA	3 cut(s)	232, 262, 637
Hpy188III	TCNNGA	4 cut(s)	56, 157, 314, 567
Hpy8I	GTNNAC	2 cut(s)	359, 787
Hpy99I	CGWCG	3 cut(s)	62, 603, 637
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	1 cut(s)	784
HpyCH4IV	ACGT	2 cut(s)	213, 273
HpyCH4V	TGCA	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 485, 494, 570, 652
HpyF3I	CTNAG	3 cut(s)	312, 480, 764
HpySE526I	ACGT	2 cut(s)	213, 273
Hsp92II	CATG	2 cut(s)	181, 405
HspAI	GCGC	3 cut(s)	344, 346, 523
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	5 cut(s)	48, 262, 430, 754, 769
LmnI	GCTCC	4 cut(s)	171, 193, 307, 533
Lsp1109I	GCAGC	2 cut(s)	385, 403
LweI	GCATC	1 cut(s)	560
MaeI	CTAG	2 cut(s)	711, 743
MaeII	ACGT	2 cut(s)	213, 273
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	5 cut(s)	50, 264, 432, 756, 771
MboI	GATC	5 cut(s)	48, 262, 430, 754, 769
MboII	GAAGA	6 cut(s)	212, 341, 451, 612, 615, 618
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	2 cut(s)	226, 607
MluCI	AATT	4 cut(s)	64, 76, 544, 802
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	2 cut(s)	149, 615
MseI	TTAA	4 cut(s)	137, 186, 516, 774
MslI	CAYNNNNRTG	2 cut(s)	276, 782
MspI	CCGG	6 cut(s)	130, 305, 382, 578, 608, 715
MspR9I	CCNGG	4 cut(s)	383, 608, 697, 716
MvaI	CCWGG	1 cut(s)	697
MvnI	CGCG	3 cut(s)	346, 348, 525
MwoI	GCNNNNNNNGC	5 cut(s)	32, 485, 494, 570, 652
NciI	CCSGG	3 cut(s)	383, 608, 716
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	5 cut(s)	48, 262, 430, 754, 769
NheI	GCTAGC	1 cut(s)	742
NlaIII	CATG	2 cut(s)	181, 405
NlaIV	GGNNCC	3 cut(s)	309, 432, 529
NspI	RCATGY	1 cut(s)	181
OliI	CACNNNNGTG	1 cut(s)	782
PauI	GCGCGC	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	6 cut(s)	375, 418, 490, 511, 527, 648
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	695
PspN4I	GGNNCC	3 cut(s)	309, 432, 529
PspPI	GGNCC	1 cut(s)	644
PsuI	RGATCY	1 cut(s)	430
PteI	GCGCGC	1 cut(s)	344
RsaI	GTAC	4 cut(s)	125, 358, 413, 788
RsaNI	GTAC	4 cut(s)	124, 357, 412, 787
RseI	CAYNNNNRTG	2 cut(s)	276, 782
SaqAI	TTAA	4 cut(s)	137, 186, 516, 774
SatI	GCNGC	6 cut(s)	374, 417, 489, 510, 526, 647
Sau3AI	GATC	5 cut(s)	48, 262, 430, 754, 769
Sau96I	GGNCC	1 cut(s)	644
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	4 cut(s)	383, 608, 697, 716
SduI	GDGCHC	2 cut(s)	226, 607
SfaNI	GCATC	1 cut(s)	560
SfcI	CTRYAG	1 cut(s)	780
SmiMI	CAYNNNNRTG	2 cut(s)	276, 782
Sse9I	AATT	4 cut(s)	64, 76, 544, 802
SsiI	CCGC	7 cut(s)	297, 394, 419, 488, 510, 525, 647
SspMI	CTAG	2 cut(s)	711, 743
StyD4I	CCNGG	4 cut(s)	381, 606, 695, 714
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	1 cut(s)	784
TaiI	ACGT	2 cut(s)	216, 276
TaqI	TCGA	3 cut(s)	47, 57, 601
TasI	AATT	4 cut(s)	64, 76, 544, 802
TatI	WGTACW	3 cut(s)	123, 356, 786
TauI	GCSGC	4 cut(s)	491, 512, 528, 649
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	4 cut(s)	137, 186, 516, 774
Tru9I	TTAA	4 cut(s)	137, 186, 516, 774
TscAI	CASTG	2 cut(s)	764, 789
TseI	GCWGC	2 cut(s)	373, 416
TspDTI	ATGAA	1 cut(s)	606
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	2 cut(s)	764, 789
XceI	RCATGY	1 cut(s)	181
XspI	CTAG	2 cut(s)	711, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.