Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004826

Physical Location & Seq

Genomic Coordinates Reverse (-)

18646898 .. 18647717

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G129300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTTTGGAGAGATTAGTTTGGAGTCTGATTTTGCTCTCTTGGAGTCCATTCGGCAACACCTTCTCGACGATAATTTCGATACTGTTTTGGAAGAATCTTCGCCGACAGCTTCAGGCAGCCCTCCTCCTATGTTCTGCCGGAGTTTCAGCTTCAGTGCCCTTTTCTCGGAGGAGAGTTGGAGCGACATGCCGCTGAAAGTGGACGACAATAACGACGTGGTCGTTTACAGTGGTTCCACAGACAGCAGATGGAGTCCATCATCAGATCACAGCCACATTGATGTTGTTGACACCACACCCGTGAAACCGGAGCCTCAGGAGGTGGTTTTGGAAAGGATAGAGGTGGCGCGTGAGACTCACGCGCCGTCATCGGGCAGGCACTTTCGAGGAGTGAGGAGGAGGCCGTGGGGGAAGTATGCAGCGGAGATTAGGGATCCTAAGAAGAACGGGGCGAGAGTGTGGCTTGGGACCTATGAGACGGCGGAGGATGCGGCATTGGCTTACGACAAAGCCGCTTTTAAGATGCGCGGCTCCAAAGCCAAACTCAACTTCCCTCACCTTATTGGCTCGGAGGGATGCGAGCCGGTTAGAATAACCCCAAAGCGGCGGGCACCGGAATCTTCCTCTTCGTCTTCCTCGTCAGACAGTGGGTCGCCAAGGCCAAAAAGGAGAAACACCGGAGTTGGCTCGGTGGCTGGAGCCGAGTCGGGTAGCGAAAGCCTAGTAGAGATGGTTGAGACGAGCCAGCTAGCCGTTGTTGATCAATGGCTAAATGATCTCAACACTACAGCATTCCCCATGCCACATGAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

272

Amino Acids

29.82

Weight (kDa)

5.17

Isoelectric Point (pI)

65.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44840
fragaria_vesca	FvH4_7g10030 FvH4_7g10040
malus_domestica	MD02G1213600.v1.1 MD07G1104900.v1.1 MD07G1105900.v1.1
prunus_persica	Prupe.2G129300_v2.0.a1 Prupe.2G129500_v2.0.a1 Prupe.2G129700_v2.0.a1
pyrus_communis	pycom07g09030
rosa_chinensis	RchiOBHm_Chr1g0347621 RchiOBHm_Chr1g0347631
rosa_laevigata	RLG00000028727 RLG00000028728
rosa_multiflora	Rmu_sc0006452.1_g000003 Rmu_sc0006452.1_g000008 Rmu_sc0010342.1_g000003 Rmu_sc0010342.1_g000008
rosa_roxburghii	Rroxscaffold_4G00307550 Rroxscaffold_4G00307580
rosa_rugosa	Rorug01G0188300 Rorug01G0188300
rosa_samantha	Rh1AG205700 Rh1AG206000 Rh1BG171300 Rh1BG171400 Rh1CG190800 Rh1DG201300 Rh1DG201400
rosa_wichuraiana	Rw0G001810 Rw1G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	814
AccB1I	GGYRCC	1 cut(s)	610
AccII	CGCG	3 cut(s)	349, 362, 528
AciI	CCGC	8 cut(s)	191, 422, 482, 491, 513, 528, 604, 607
AclWI	GGATC	2 cut(s)	428, 441
AcuI	CTGAAG	2 cut(s)	96, 136
AfiI	CCNNNNNNNGG	3 cut(s)	166, 371, 603
AhdI	GACNNNNNGTC	1 cut(s)	649
AjiI	CACGTC	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	533, 565
AleI	CACNNNNGTG	1 cut(s)	299
AluBI	AGCT	3 cut(s)	110, 150, 748
AluI	AGCT	3 cut(s)	110, 150, 748
Alw26I	GTCTC	3 cut(s)	347, 470, 731
AlwI	GGATC	2 cut(s)	428, 441
AoxI	GGCC	2 cut(s)	401, 659
ApeKI	GCWGC	2 cut(s)	117, 419
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AspLEI	GCGC	3 cut(s)	349, 364, 528
AspS9I	GGNCC	1 cut(s)	468
AsuHPI	GGTGA	1 cut(s)	548
AsuNHI	GCTAGC	1 cut(s)	748
AvaII	GGWCC	1 cut(s)	468
AxyI	CCTNAGG	1 cut(s)	315
BaeGI	GKGCMC	2 cut(s)	160, 613
BamHI	GGATCC	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	610
BbsI	GAAGAC	1 cut(s)	624
BbvI	GCAGC	2 cut(s)	129, 431
BccI	CCATC	3 cut(s)	243, 265, 724
BceAI	ACGGC	4 cut(s)	349, 388, 495, 737
BclI	TGATCA	1 cut(s)	760
BcoDI	GTCTC	3 cut(s)	347, 470, 731
BfaI	CTAG	2 cut(s)	722, 749
BfmI	CTRYAG	1 cut(s)	786
BisI	GCNGC	7 cut(s)	118, 191, 420, 492, 513, 529, 605
BlsI	GCNGC	7 cut(s)	119, 192, 421, 493, 514, 530, 606
Bme18I	GGWCC	1 cut(s)	468
BmeRI	GACNNNNNGTC	1 cut(s)	649
BmgBI	CACGTC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	468
BmiI	GGNNCC	7 cut(s)	235, 312, 435, 469, 532, 612, 700
BmsI	GCATC	3 cut(s)	478, 513, 566
BmtI	GCTAGC	1 cut(s)	752
BpiI	GAAGAC	1 cut(s)	624
BpmI	CTGGAG	1 cut(s)	717
BsaJI	CCNNGG	2 cut(s)	404, 656
BsaWI	WCCGGW	3 cut(s)	307, 613, 677
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 371, 603
Bse118I	RCCGGY	1 cut(s)	583
Bse21I	CCTNAGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	404, 656
BseGI	GGATG	2 cut(s)	493, 581
BseLI	CCNNNNNNNGG	3 cut(s)	166, 371, 603
BseMII	CTCAG	1 cut(s)	329
BseRI	GAGGAG	5 cut(s)	114, 185, 402, 409, 412
BseSI	GKGCMC	2 cut(s)	160, 613
BseXI	GCAGC	2 cut(s)	129, 431
Bsh1236I	CGCG	3 cut(s)	349, 362, 528
BshFI	GGCC	2 cut(s)	403, 661
BshNI	GGYRCC	1 cut(s)	610
BsiSI	CCGG	5 cut(s)	139, 308, 584, 614, 678
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	3 cut(s)	166, 371, 603
BsmAI	GTCTC	3 cut(s)	347, 470, 731
BsmBI	CGTCTC	2 cut(s)	470, 731
BsmFI	GGGAC	1 cut(s)	481
BsmI	GAATGC	1 cut(s)	791
BsnI	GGCC	2 cut(s)	403, 661
Bsp1286I	GDGCHC	2 cut(s)	160, 613
Bsp143I	GATC	4 cut(s)	265, 433, 760, 775
BspACI	CCGC	8 cut(s)	191, 422, 482, 491, 513, 528, 604, 607
BspANI	GGCC	2 cut(s)	403, 661
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	3 cut(s)	349, 362, 528
BspLI	GGNNCC	7 cut(s)	235, 312, 435, 469, 532, 612, 700
BspOI	GCTAGC	1 cut(s)	752
BspPI	GGATC	2 cut(s)	428, 441
BspT107I	GGYRCC	1 cut(s)	610
BsrFI	RCCGGY	1 cut(s)	583
BssAI	RCCGGY	1 cut(s)	583
BssECI	CCNNGG	2 cut(s)	404, 656
BssMI	GATC	4 cut(s)	265, 433, 760, 775
BssT1I	CCWWGG	1 cut(s)	656
Bst4CI	ACNGT	3 cut(s)	85, 230, 647
Bst6I	CTCTTC	1 cut(s)	631
BstC8I	GCNNGC	5 cut(s)	377, 581, 609, 746, 750
BstDEI	CTNAG	2 cut(s)	315, 438
BstDSI	CCRYGG	1 cut(s)	404
BstF5I	GGATG	2 cut(s)	493, 581
BstFNI	CGCG	3 cut(s)	349, 362, 528
BstHHI	GCGC	3 cut(s)	349, 364, 528
BstKTI	GATC	4 cut(s)	268, 436, 763, 778
BstMAI	GTCTC	3 cut(s)	347, 470, 731
BstMBI	GATC	4 cut(s)	265, 433, 760, 775
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 497
BstNSI	RCATGY	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	786
BstSLI	GKGCMC	2 cut(s)	160, 613
BstUI	CGCG	3 cut(s)	349, 362, 528
BstV1I	GCAGC	2 cut(s)	129, 431
BstV2I	GAAGAC	1 cut(s)	624
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
Bsu36I	CCTNAGG	1 cut(s)	315
BsuRI	GGCC	2 cut(s)	403, 661
BtgI	CCRYGG	1 cut(s)	404
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	2 cut(s)	493, 581
BtsIMutI	CAGTG	3 cut(s)	160, 235, 652
Cac8I	GCNNGC	5 cut(s)	377, 581, 609, 746, 750
CfoI	GCGC	3 cut(s)	349, 364, 528
Cfr10I	RCCGGY	1 cut(s)	583
Cfr13I	GGNCC	1 cut(s)	468
CviAII	CATG	3 cut(s)	187, 799, 806
DdeI	CTNAG	2 cut(s)	315, 438
DpnI	GATC	4 cut(s)	267, 435, 762, 777
DpnII	GATC	4 cut(s)	265, 433, 760, 775
DriI	GACNNNNNGTC	1 cut(s)	649
Eam1104I	CTCTTC	1 cut(s)	631
Eam1105I	GACNNNNNGTC	1 cut(s)	649
EarI	CTCTTC	1 cut(s)	631
EciI	GGCGGA	1 cut(s)	497
Eco130I	CCWWGG	1 cut(s)	656
Eco47I	GGWCC	1 cut(s)	468
Eco57I	CTGAAG	2 cut(s)	96, 136
Eco81I	CCTNAGG	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	468
EcoT14I	CCWWGG	1 cut(s)	656
ErhI	CCWWGG	1 cut(s)	656
Esp3I	CGTCTC	2 cut(s)	470, 731
FaeI	CATG	3 cut(s)	190, 802, 809
FaiI	YATR	7 cut(s)	131, 188, 417, 474, 800, 807, 814
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	3 cut(s)	186, 798, 805
FauI	CCCGC	1 cut(s)	600
FbaI	TGATCA	1 cut(s)	760
Fnu4HI	GCNGC	7 cut(s)	118, 191, 420, 492, 513, 529, 605
FokI	GGATG	2 cut(s)	500, 588
Fsp4HI	GCNGC	7 cut(s)	118, 191, 420, 492, 513, 529, 605
FspBI	CTAG	2 cut(s)	722, 749
GlaI	GCGC	3 cut(s)	348, 363, 527
GluI	GCNGC	7 cut(s)	118, 191, 420, 492, 513, 529, 605
GsuI	CTGGAG	1 cut(s)	717
HaeIII	GGCC	2 cut(s)	403, 661
HapII	CCGG	5 cut(s)	139, 308, 584, 614, 678
HhaI	GCGC	3 cut(s)	349, 364, 528
Hin1II	CATG	3 cut(s)	190, 802, 809
Hin6I	GCGC	3 cut(s)	347, 362, 526
HinP1I	GCGC	3 cut(s)	347, 362, 526
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	7 cut(s)	23, 44, 95, 253, 355, 617, 704
HpaII	CCGG	5 cut(s)	139, 308, 584, 614, 678
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	3 cut(s)	202, 226, 289
Hpy188I	TCNGA	5 cut(s)	28, 169, 265, 571, 643
Hpy188III	TCNNGA	2 cut(s)	65, 317
Hpy8I	GTNNAC	3 cut(s)	202, 226, 289
Hpy99I	CGWCG	2 cut(s)	71, 218
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	3 cut(s)	85, 230, 647
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 497
HpyF3I	CTNAG	2 cut(s)	315, 438
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	190, 802, 809
HspAI	GCGC	3 cut(s)	347, 362, 526
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	4 cut(s)	265, 433, 760, 775
LmnI	GCTCC	4 cut(s)	180, 310, 536, 698
Lsp1109I	GCAGC	2 cut(s)	129, 431
LweI	GCATC	3 cut(s)	478, 513, 566
MaeI	CTAG	2 cut(s)	722, 749
MaeII	ACGT	1 cut(s)	216
MalI	GATC	4 cut(s)	267, 435, 762, 777
MboI	GATC	4 cut(s)	265, 433, 760, 775
MboII	GAAGA	6 cut(s)	90, 104, 454, 612, 618, 624
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	2 cut(s)	160, 613
MluCI	AATT	2 cut(s)	73, 809
MlyI	GAGTC	5 cut(s)	32, 53, 262, 349, 713
MmeI	TCCRAC	1 cut(s)	158
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	2 cut(s)	279, 299
MspA1I	CMGCKG	2 cut(s)	193, 422
MspI	CCGG	5 cut(s)	139, 308, 584, 614, 678
Mva1269I	GAATGC	1 cut(s)	791
MvnI	CGCG	3 cut(s)	349, 362, 528
MwoI	GCNNNNNNNGC	2 cut(s)	488, 497
NdeII	GATC	4 cut(s)	265, 433, 760, 775
NheI	GCTAGC	1 cut(s)	748
NlaIII	CATG	3 cut(s)	190, 802, 809
NlaIV	GGNNCC	7 cut(s)	235, 312, 435, 469, 532, 612, 700
NmeAIII	GCCGAG	1 cut(s)	727
NspI	RCATGY	1 cut(s)	190
OliI	CACNNNNGTG	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	4 cut(s)	75, 210, 219, 635
PctI	GAATGC	1 cut(s)	791
PfeI	GAWTC	2 cut(s)	95, 617
PflFI	GACNNNGTC	1 cut(s)	218
PkrI	GCNGC	7 cut(s)	119, 192, 421, 493, 514, 530, 606
PleI	GAGTC	5 cut(s)	31, 52, 261, 349, 712
PpsI	GAGTC	5 cut(s)	31, 52, 261, 349, 712
PpuMI	RGGWCCY	1 cut(s)	468
PsiI	TTATAA	1 cut(s)	814
Psp5II	RGGWCCY	1 cut(s)	468
PspN4I	GGNNCC	7 cut(s)	235, 312, 435, 469, 532, 612, 700
PspPI	GGNCC	1 cut(s)	468
PspPPI	RGGWCCY	1 cut(s)	468
PsuI	RGATCY	1 cut(s)	433
PsyI	GACNNNGTC	1 cut(s)	218
RseI	CAYNNNNRTG	2 cut(s)	279, 299
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	7 cut(s)	118, 191, 420, 492, 513, 529, 605
Sau3AI	GATC	4 cut(s)	265, 433, 760, 775
Sau96I	GGNCC	1 cut(s)	468
SchI	GAGTC	5 cut(s)	32, 53, 262, 349, 713
SduI	GDGCHC	2 cut(s)	160, 613
SetI	ASST	9 cut(s)	63, 112, 152, 219, 324, 345, 473, 561, 750
SfaNI	GCATC	3 cut(s)	478, 513, 566
SfcI	CTRYAG	1 cut(s)	786
SinI	GGWCC	1 cut(s)	468
SmiMI	CAYNNNNRTG	2 cut(s)	279, 299
Sse9I	AATT	2 cut(s)	73, 809
SsiI	CCGC	8 cut(s)	191, 422, 482, 491, 513, 528, 604, 607
SspMI	CTAG	2 cut(s)	722, 749
StyI	CCWWGG	1 cut(s)	656
TaaI	ACNGT	3 cut(s)	85, 230, 647
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	3 cut(s)	66, 78, 385
TasI	AATT	2 cut(s)	73, 809
TauI	GCSGC	5 cut(s)	193, 494, 515, 531, 607
TfiI	GAWTC	2 cut(s)	95, 617
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	3 cut(s)	160, 235, 652
TseI	GCWGC	2 cut(s)	117, 419
TspRI	CASTG	3 cut(s)	160, 235, 652
Tth111I	GACNNNGTC	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	468
XceI	RCATGY	1 cut(s)	190
XspI	CTAG	2 cut(s)	722, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.