Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004826

Physical Location & Seq

Genomic Coordinates Reverse (-)

9485741 .. 9487013

Gene Structure 1273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTTTGAAGAGATTGACTTGGAGTCTGATTTCGCTTTGTTGGAATCCATTCGCCAACACCTACTCGACGATAATTTCGACACCACTTTCGATCTCGAAGCATCATCTCCAACAGTTTCGGGCTCTCCTCCTCCAATCTACTGCCGCAGTTTCAGCTTCGGCACCCTTTTCTCCGCAGAGAATGGGAGCAACTCGCCGCTAAAAGGGGACAGCGACTGCGACGATATTGCCCTTTCCGGTGCCGTGCCTGATGAATTTAGGGCATCGGCAGTGAAAACGGAGCCTTGGGAGGTGGTAGAGGTAGTAGAGGAGGAGCGTGATACAGCATCGGCAGTGAAAACGGAGTCTCGGGAGGTCACAGAGGTAGTAGAAGAGGAGAGTGTGGCGGAGCGTGAGACTCACGCGCCGTCGTTGGGGAGGCACTTTCGGGGAGTGAGGCGGAGGCCGTGGGGGAAGTACGCGGCGGAGATCAGGGATCCGAAGAAAAACGGCAGCAGAGTGTGGCTTGGGACCTACGAAACGGCTGAGGACGCTGCATTGGCTTATGACCAAGCTGCTTTTAAGATGCGCGGCTCCAAAGCAAAGCTCAACTTCCCTCACCTTATCGGCTCAGGGGGATCGCTTCCGGTTAGAATAACTCCCAAGCGGCGGTCACCGGAAACTTATTCGTCATCTTCGTCTTCAACTTCGGAGAGCTGCTCGCCGAAGCCAAAAAGGCAAAACCTTGGAGTCGGGCCGGTGGCGGCCGATCGAGGCGGAGTCCGGTGGCTCGAGCCGAGTGGAGATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

264

Amino Acids

28.76

Weight (kDa)

4.95

Isoelectric Point (pI)

64.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	141 - 192	6.1e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44840
fragaria_vesca	FvH4_7g10030 FvH4_7g10040
malus_domestica	MD02G1213600.v1.1 MD07G1104900.v1.1 MD07G1105900.v1.1
prunus_persica	Prupe.2G129300_v2.0.a1 Prupe.2G129500_v2.0.a1 Prupe.2G129700_v2.0.a1
pyrus_communis	pycom07g09030
rosa_chinensis	RchiOBHm_Chr1g0347621 RchiOBHm_Chr1g0347631
rosa_laevigata	RLG00000028727 RLG00000028728
rosa_multiflora	Rmu_sc0006452.1_g000003 Rmu_sc0006452.1_g000008 Rmu_sc0010342.1_g000003 Rmu_sc0010342.1_g000008
rosa_roxburghii	Rroxscaffold_4G00307550 Rroxscaffold_4G00307580
rosa_rugosa	Rorug01G0188300 Rorug01G0188300
rosa_samantha	Rh1AG205700 Rh1AG206000 Rh1BG171300 Rh1BG171400 Rh1CG190800 Rh1DG201300 Rh1DG201400
rosa_wichuraiana	Rw0G001810 Rw1G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	161, 239
AccII	CGCG	3 cut(s)	404, 461, 570
AclWI	GGATC	3 cut(s)	470, 483, 625
AcoI	YGGCCR	1 cut(s)	744
AcsI	RAATTY	1 cut(s)	254
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	3 cut(s)	203, 413, 648
AgsI	TTSAA	2 cut(s)	8, 684
AhdI	GACNNNNNGTC	1 cut(s)	22
AluBI	AGCT	4 cut(s)	156, 554, 586, 696
AluI	AGCT	4 cut(s)	156, 554, 586, 696
Alw26I	GTCTC	2 cut(s)	351, 389
AlwI	GGATC	3 cut(s)	470, 483, 625
AlwNI	CAGNNNCTG	1 cut(s)	216
Ama87I	CYCGRG	2 cut(s)	348, 770
AoxI	GGCC	3 cut(s)	443, 734, 744
ApeKI	GCWGC	4 cut(s)	492, 533, 554, 696
ApoI	RAATTY	1 cut(s)	254
ArsI	GACNNNNNNTTYG	4 cut(s)	59, 71, 91, 103
Asp700I	GAANNNNTTC	1 cut(s)	48
AspLEI	GCGC	2 cut(s)	406, 570
AspS9I	GGNCC	2 cut(s)	510, 734
AsuHPI	GGTGA	2 cut(s)	590, 645
AvaI	CYCGRG	2 cut(s)	348, 770
AvaII	GGWCC	1 cut(s)	510
BamHI	GGATCC	1 cut(s)	475
BanI	GGYRCC	2 cut(s)	161, 239
BanII	GRGCYC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	672
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	4 cut(s)	504, 520, 541, 683
BceAI	ACGGC	5 cut(s)	227, 391, 430, 505, 537
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BcoDI	GTCTC	2 cut(s)	351, 389
BglI	GCCNNNNNGGC	1 cut(s)	715
Bme18I	GGWCC	1 cut(s)	510
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmeT110I	CYCGRG	2 cut(s)	348, 770
BmgT120I	GGNCC	2 cut(s)	510, 734
BmiI	GGNNCC	6 cut(s)	163, 241, 282, 477, 511, 574
BmsI	GCATC	4 cut(s)	110, 272, 335, 555
BpiI	GAAGAC	1 cut(s)	672
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
Bpu10I	CCTNAGC	2 cut(s)	525, 610
BsaJI	CCNNGG	3 cut(s)	284, 446, 724
BsaWI	WCCGGW	4 cut(s)	236, 625, 655, 762
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 413, 648
Bse118I	RCCGGY	1 cut(s)	736
BseDI	CCNNGG	3 cut(s)	284, 446, 724
BseLI	CCNNNNNNNGG	3 cut(s)	203, 413, 648
BseMII	CTCAG	2 cut(s)	516, 624
BseRI	GAGGAG	5 cut(s)	117, 120, 323, 326, 389
BseX3I	CGGCCG	1 cut(s)	744
BseXI	GCAGC	4 cut(s)	504, 520, 541, 683
Bsh1236I	CGCG	3 cut(s)	404, 461, 570
Bsh1285I	CGRYCG	2 cut(s)	747, 751
BshFI	GGCC	3 cut(s)	445, 736, 746
BshNI	GGYRCC	2 cut(s)	161, 239
BsiEI	CGRYCG	2 cut(s)	747, 751
BsiHKCI	CYCGRG	2 cut(s)	348, 770
BsiSI	CCGG	5 cut(s)	237, 626, 656, 737, 763
BslFI	GGGAC	2 cut(s)	221, 523
BslI	CCNNNNNNNGG	3 cut(s)	203, 413, 648
BsmAI	GTCTC	2 cut(s)	351, 389
BsmFI	GGGAC	2 cut(s)	221, 523
BsnI	GGCC	3 cut(s)	445, 736, 746
BsoBI	CYCGRG	2 cut(s)	348, 770
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	5 cut(s)	91, 468, 475, 617, 748
BspANI	GGCC	3 cut(s)	445, 736, 746
BspCNI	CTCAG	2 cut(s)	517, 623
BspFNI	CGCG	3 cut(s)	404, 461, 570
BspLI	GGNNCC	6 cut(s)	163, 241, 282, 477, 511, 574
BspPI	GGATC	3 cut(s)	470, 483, 625
BspT107I	GGYRCC	2 cut(s)	161, 239
BsrFI	RCCGGY	1 cut(s)	736
BssAI	RCCGGY	1 cut(s)	736
BssECI	CCNNGG	3 cut(s)	284, 446, 724
BssMI	GATC	5 cut(s)	91, 468, 475, 617, 748
BssT1I	CCWWGG	2 cut(s)	284, 724
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	2 cut(s)	3, 366
BstC8I	GCNNGC	1 cut(s)	701
BstDEI	CTNAG	2 cut(s)	525, 610
BstDSI	CCRYGG	1 cut(s)	446
BstEII	GGTNACC	1 cut(s)	651
BstFNI	CGCG	3 cut(s)	404, 461, 570
BstHHI	GCGC	2 cut(s)	406, 570
BstKTI	GATC	5 cut(s)	94, 471, 478, 620, 751
BstMAI	GTCTC	2 cut(s)	351, 389
BstMBI	GATC	5 cut(s)	91, 468, 475, 617, 748
BstMCI	CGRYCG	2 cut(s)	747, 751
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 530, 539, 715
BstPI	GGTNACC	1 cut(s)	651
BstUI	CGCG	3 cut(s)	404, 461, 570
BstV1I	GCAGC	4 cut(s)	504, 520, 541, 683
BstV2I	GAAGAC	1 cut(s)	672
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BstZI	CGGCCG	1 cut(s)	744
BsuRI	GGCC	3 cut(s)	445, 736, 746
BtgI	CCRYGG	1 cut(s)	446
BtsI	GCAGTG	2 cut(s)	276, 339
BtsIMutI	CAGTG	2 cut(s)	276, 339
Cac8I	GCNNGC	1 cut(s)	701
CaiI	CAGNNNCTG	1 cut(s)	216
CfoI	GCGC	2 cut(s)	406, 570
Cfr10I	RCCGGY	1 cut(s)	736
Cfr13I	GGNCC	2 cut(s)	510, 734
CseI	GACGC	1 cut(s)	539
Csp6I	GTAC	1 cut(s)	457
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	2 cut(s)	525, 610
DpnI	GATC	5 cut(s)	93, 470, 477, 619, 750
DpnII	GATC	5 cut(s)	91, 468, 475, 617, 748
DriI	GACNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	744
EagI	CGGCCG	1 cut(s)	744
Eam1104I	CTCTTC	2 cut(s)	3, 366
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EarI	CTCTTC	2 cut(s)	3, 366
EciI	GGCGGA	4 cut(s)	401, 454, 479, 771
EclXI	CGGCCG	1 cut(s)	744
Eco130I	CCWWGG	2 cut(s)	284, 724
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	510
Eco52I	CGGCCG	1 cut(s)	744
Eco88I	CYCGRG	2 cut(s)	348, 770
Eco91I	GGTNACC	1 cut(s)	651
EcoO109I	RGGNCCY	1 cut(s)	510
EcoO65I	GGTNACC	1 cut(s)	651
EcoT14I	CCWWGG	2 cut(s)	284, 724
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	2 cut(s)	284, 724
FaiI	YATR	1 cut(s)	546
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	2 cut(s)	221, 523
FriOI	GRGCYC	1 cut(s)	125
GlaI	GCGC	2 cut(s)	405, 569
HaeIII	GGCC	3 cut(s)	445, 736, 746
HapII	CCGG	5 cut(s)	237, 626, 656, 737, 763
HgaI	GACGC	1 cut(s)	539
HhaI	GCGC	2 cut(s)	406, 570
Hin6I	GCGC	2 cut(s)	404, 568
HinP1I	GCGC	2 cut(s)	404, 568
HinfI	GANTC	6 cut(s)	23, 44, 344, 397, 729, 759
HpaII	CCGG	5 cut(s)	237, 626, 656, 737, 763
HphI	GGTGA	2 cut(s)	590, 645
Hpy188I	TCNGA	3 cut(s)	28, 480, 691
Hpy188III	TCNNGA	2 cut(s)	95, 350
Hpy99I	CGWCG	3 cut(s)	71, 224, 412
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 530, 539, 715
HpyF3I	CTNAG	2 cut(s)	525, 610
HspAI	GCGC	2 cut(s)	404, 568
Kzo9I	GATC	5 cut(s)	91, 468, 475, 617, 748
LmnI	GCTCC	5 cut(s)	186, 280, 313, 388, 578
LpnPI	CCDG	8 cut(s)	250, 261, 457, 597, 639, 669, 750, 776
Lsp1109I	GCAGC	4 cut(s)	504, 520, 541, 683
LweI	GCATC	4 cut(s)	110, 272, 335, 555
MaeIII	GTNAC	2 cut(s)	355, 651
MalI	GATC	5 cut(s)	93, 470, 477, 619, 750
MboI	GATC	5 cut(s)	91, 468, 475, 617, 748
MboII	GAAGA	5 cut(s)	20, 383, 493, 666, 672
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	2 cut(s)	73, 254
MlyI	GAGTC	5 cut(s)	32, 353, 391, 738, 768
MmeI	TCCRAC	2 cut(s)	21, 134
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	1 cut(s)	561
MspI	CCGG	5 cut(s)	237, 626, 656, 737, 763
MvnI	CGCG	3 cut(s)	404, 461, 570
MwoI	GCNNNNNNNGC	4 cut(s)	153, 530, 539, 715
NdeII	GATC	5 cut(s)	91, 468, 475, 617, 748
NlaIV	GGNNCC	6 cut(s)	163, 241, 282, 477, 511, 574
NmuCI	GTSAC	2 cut(s)	355, 651
PaeR7I	CTCGAG	1 cut(s)	770
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 674
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	44
Ple19I	CGATCG	1 cut(s)	751
PleI	GAGTC	5 cut(s)	31, 352, 391, 737, 767
PpsI	GAGTC	5 cut(s)	31, 352, 391, 737, 767
PpuMI	RGGWCCY	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	510
PspEI	GGTNACC	1 cut(s)	651
PspN4I	GGNNCC	6 cut(s)	163, 241, 282, 477, 511, 574
PspPI	GGNCC	2 cut(s)	510, 734
PspPPI	RGGWCCY	1 cut(s)	510
PspXI	VCTCGAGB	1 cut(s)	770
PstNI	CAGNNNCTG	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	475
PvuI	CGATCG	1 cut(s)	751
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	561
Sau3AI	GATC	5 cut(s)	91, 468, 475, 617, 748
Sau96I	GGNCC	2 cut(s)	510, 734
SchI	GAGTC	5 cut(s)	32, 353, 391, 738, 768
SduI	GDGCHC	1 cut(s)	125
SfaNI	GCATC	4 cut(s)	110, 272, 335, 555
Sfr274I	CTCGAG	1 cut(s)	770
SinI	GGWCC	1 cut(s)	510
SlaI	CTCGAG	1 cut(s)	770
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
Sse9I	AATT	2 cut(s)	73, 254
StyI	CCWWGG	2 cut(s)	284, 724
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	6 cut(s)	66, 78, 90, 96, 751, 771
TasI	AATT	2 cut(s)	73, 254
TauI	GCSGC	6 cut(s)	147, 199, 464, 573, 649, 746
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	2 cut(s)	276, 339
TseFI	GTSAC	2 cut(s)	355, 651
TseI	GCWGC	4 cut(s)	492, 533, 554, 696
Tsp45I	GTSAC	2 cut(s)	355, 651
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	2 cut(s)	293, 356
TspRI	CASTG	2 cut(s)	276, 339
VpaK11BI	GGWCC	1 cut(s)	510
XapI	RAATTY	1 cut(s)	254
XhoI	CTCGAG	1 cut(s)	770
XmnI	GAANNNNTTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.