Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004826

Physical Location & Seq

Genomic Coordinates Reverse (-)

28912914 .. 28915612

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00307550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTCCGAACCTCTACCTCAACAACAACCTATTCAAGGGTTAGGTCCGATCGCGGAGATTCGGACGATGATTCAAATCAATCCGATCGCGGAGATTCCCCATAGCGACTTGTTGTGTCCGCGCACAATTGCATGGTCCCTCCGGTGGAGATGCCTTGCTTGGTCGAAGTCCGGGATGCGAAGACGAGGCCTACTACGCAATGTAACGAGTGGAGAGGGTAGAGAGGCCTACTACCGGAAAATTGCATGTGTTCGGTTTTCTAGTGACGTGAGGTTAGTTGACCGAGTTGGTGTTTTGGGACGTGATGGAGGCATCAATGGGGGCGCACTGCTCCTGAGATTTTGGAAGCTTGGAATCGCGATTATTTGCTTGGATCTCGCCTGCTTGGGTCATTTCCATGGTGGTGATGGTGTTTTGTGCAGCCGACGGTCTTTGACTGGATCGCACGACTTTGTTTCTATTACCACGGGATTGATCTGTTTTCGTGGTGCTGACGTTGGCAGTCTTCATCCTACTGGGTCGAATGGTGATGCGTCCTTGAGAGGCTCTTCTTCAGGATCTATGGAACTGCGTCCCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

20.97

Weight (kDa)

9.78

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44840
fragaria_vesca	FvH4_7g10030 FvH4_7g10040
malus_domestica	MD02G1213600.v1.1 MD07G1104900.v1.1 MD07G1105900.v1.1
prunus_persica	Prupe.2G129300_v2.0.a1 Prupe.2G129500_v2.0.a1 Prupe.2G129700_v2.0.a1
pyrus_communis	pycom07g09030
rosa_chinensis	RchiOBHm_Chr1g0347621 RchiOBHm_Chr1g0347631
rosa_laevigata	RLG00000028727 RLG00000028728
rosa_multiflora	Rmu_sc0006452.1_g000003 Rmu_sc0006452.1_g000008 Rmu_sc0010342.1_g000003 Rmu_sc0010342.1_g000008
rosa_roxburghii	Rroxscaffold_4G00307550 Rroxscaffold_4G00307580
rosa_rugosa	Rorug01G0188300 Rorug01G0188300
rosa_samantha	Rh1AG205700 Rh1AG206000 Rh1BG171300 Rh1BG171400 Rh1CG190800 Rh1DG201300 Rh1DG201400
rosa_wichuraiana	Rw0G001810 Rw1G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	53, 89, 121, 359
AciI	CCGC	3 cut(s)	53, 89, 119
AclWI	GGATC	3 cut(s)	381, 448, 565
AcuI	CTGAAG	1 cut(s)	537
AfiI	CCNNNNNNNGG	3 cut(s)	35, 144, 234
AgsI	TTSAA	2 cut(s)	35, 74
AjiI	CACGTC	2 cut(s)	268, 302
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
AlwI	GGATC	3 cut(s)	381, 448, 565
AoxI	GGCC	2 cut(s)	187, 225
ApeKI	GCWGC	1 cut(s)	420
AspLEI	GCGC	2 cut(s)	123, 326
AspS9I	GGNCC	2 cut(s)	44, 135
AsuC2I	CCSGG	2 cut(s)	172, 577
AsuHPI	GGTGA	2 cut(s)	416, 539
AvaII	GGWCC	2 cut(s)	44, 135
BbsI	GAAGAC	2 cut(s)	187, 497
BbvI	GCAGC	1 cut(s)	432
BccI	CCATC	2 cut(s)	299, 401
BcnI	CCSGG	2 cut(s)	172, 577
BfaI	CTAG	1 cut(s)	261
BisI	GCNGC	1 cut(s)	421
BlsI	GCNGC	1 cut(s)	422
Bme1390I	CCNGG	2 cut(s)	172, 577
Bme18I	GGWCC	2 cut(s)	44, 135
BmgBI	CACGTC	2 cut(s)	268, 302
BmgT120I	GGNCC	2 cut(s)	44, 135
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	2 cut(s)	172, 577
BmrI	ACTGGG	1 cut(s)	525
BmsI	GCATC	4 cut(s)	140, 165, 321, 520
BmuI	ACTGGG	1 cut(s)	525
BpiI	GAAGAC	2 cut(s)	187, 497
BpuEI	CTTGAG	1 cut(s)	559
BpuMI	CCSGG	2 cut(s)	172, 577
BsaBI	GATNNNNATC	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	397, 465, 575
BsaWI	WCCGGW	2 cut(s)	141, 234
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 144, 234
Bse1I	ACTGG	2 cut(s)	442, 520
Bse3DI	GCAATG	1 cut(s)	205
Bse8I	GATNNNNATC	1 cut(s)	74
BseDI	CCNNGG	3 cut(s)	397, 465, 575
BseGI	GGATG	2 cut(s)	180, 508
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	3 cut(s)	35, 144, 234
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	326
BseNI	ACTGG	2 cut(s)	442, 520
BseXI	GCAGC	1 cut(s)	432
BsgI	GTGCAG	1 cut(s)	439
Bsh1236I	CGCG	4 cut(s)	53, 89, 121, 359
Bsh1285I	CGRYCG	2 cut(s)	51, 87
BshFI	GGCC	2 cut(s)	189, 227
BsiEI	CGRYCG	2 cut(s)	51, 87
BsiSI	CCGG	4 cut(s)	142, 171, 235, 577
BslFI	GGGAC	3 cut(s)	121, 312, 558
BslI	CCNNNNNNNGG	3 cut(s)	35, 144, 234
BsmFI	GGGAC	3 cut(s)	121, 312, 558
BsnI	GGCC	2 cut(s)	189, 227
Bsp143I	GATC	6 cut(s)	48, 84, 373, 440, 474, 557
Bsp19I	CCATGG	1 cut(s)	397
Bsp68I	TCGCGA	1 cut(s)	359
BspACI	CCGC	3 cut(s)	53, 89, 119
BspANI	GGCC	2 cut(s)	189, 227
BspCNI	CTCAG	1 cut(s)	327
BspFNI	CGCG	4 cut(s)	53, 89, 121, 359
BspLI	GGNNCC	1 cut(s)	137
BspPI	GGATC	3 cut(s)	381, 448, 565
BspQI	GCTCTTC	1 cut(s)	553
BsrDI	GCAATG	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	442, 520
BssECI	CCNNGG	3 cut(s)	397, 465, 575
BssMI	GATC	6 cut(s)	48, 84, 373, 440, 474, 557
BssT1I	CCWWGG	1 cut(s)	397
Bst4CI	ACNGT	1 cut(s)	429
Bst6I	CTCTTC	1 cut(s)	553
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	335
BstDSI	CCRYGG	2 cut(s)	397, 465
BstENI	CCTNNNNNAGG	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	180, 508
BstFNI	CGCG	4 cut(s)	53, 89, 121, 359
BstHHI	GCGC	2 cut(s)	123, 326
BstKTI	GATC	6 cut(s)	51, 87, 376, 443, 477, 560
BstMBI	GATC	6 cut(s)	48, 84, 373, 440, 474, 557
BstMCI	CGRYCG	2 cut(s)	51, 87
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	170, 575
BstUI	CGCG	4 cut(s)	53, 89, 121, 359
BstV1I	GCAGC	1 cut(s)	432
BstV2I	GAAGAC	2 cut(s)	187, 497
BstX2I	RGATCY	2 cut(s)	373, 557
BstYI	RGATCY	2 cut(s)	373, 557
BsuRI	GGCC	2 cut(s)	189, 227
BtgI	CCRYGG	2 cut(s)	397, 465
BtrI	CACGTC	2 cut(s)	268, 302
BtsCI	GGATG	2 cut(s)	180, 508
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	326
BtuMI	TCGCGA	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	382
CfoI	GCGC	2 cut(s)	123, 326
Cfr13I	GGNCC	2 cut(s)	44, 135
CseI	GACGC	2 cut(s)	522, 560
CviAII	CATG	3 cut(s)	132, 246, 398
CviJI	RGCY	5 cut(s)	189, 227, 349, 423, 546
CviKI_1	RGCY	5 cut(s)	189, 227, 349, 423, 546
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	6 cut(s)	50, 86, 375, 442, 476, 559
DpnII	GATC	6 cut(s)	48, 84, 373, 440, 474, 557
Eam1104I	CTCTTC	1 cut(s)	553
EarI	CTCTTC	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	397
Eco147I	AGGCCT	2 cut(s)	189, 227
Eco47I	GGWCC	2 cut(s)	44, 135
Eco57I	CTGAAG	1 cut(s)	537
EcoNI	CCTNNNNNAGG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	3 cut(s)	135, 249, 401
FaiI	YATR	5 cut(s)	102, 133, 247, 399, 563
FaqI	GGGAC	3 cut(s)	121, 312, 558
FatI	CATG	3 cut(s)	131, 245, 397
Fnu4HI	GCNGC	1 cut(s)	421
FokI	GGATG	2 cut(s)	187, 495
Fsp4HI	GCNGC	1 cut(s)	421
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	2 cut(s)	122, 325
GluI	GCNGC	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	189, 227
HapII	CCGG	4 cut(s)	142, 171, 235, 577
HgaI	GACGC	2 cut(s)	522, 560
HhaI	GCGC	2 cut(s)	123, 326
Hin1II	CATG	3 cut(s)	135, 249, 401
Hin6I	GCGC	2 cut(s)	121, 324
HinP1I	GCGC	2 cut(s)	121, 324
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	4 cut(s)	58, 70, 94, 354
HpaII	CCGG	4 cut(s)	142, 171, 235, 577
HphI	GGTGA	2 cut(s)	416, 539
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	4 cut(s)	7, 48, 63, 84
Hpy188III	TCNNGA	3 cut(s)	334, 358, 555
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	1 cut(s)	429
HpyCH4III	ACNGT	1 cut(s)	429
HpyCH4IV	ACGT	3 cut(s)	267, 301, 495
HpyCH4V	TGCA	3 cut(s)	131, 245, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	3 cut(s)	267, 301, 495
Hsp92II	CATG	3 cut(s)	135, 249, 401
HspAI	GCGC	2 cut(s)	121, 324
Kzo9I	GATC	6 cut(s)	48, 84, 373, 440, 474, 557
LguI	GCTCTTC	1 cut(s)	553
LmnI	GCTCC	1 cut(s)	336
LpnPI	CCDG	8 cut(s)	155, 184, 248, 347, 394, 423, 501, 540
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	4 cut(s)	140, 165, 321, 520
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	3 cut(s)	267, 301, 495
MaeIII	GTNAC	2 cut(s)	202, 263
MalI	GATC	6 cut(s)	50, 86, 375, 442, 476, 559
MboI	GATC	6 cut(s)	48, 84, 373, 440, 474, 557
MboII	GAAGA	4 cut(s)	192, 497, 540, 543
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	2 cut(s)	373, 557
MluCI	AATT	2 cut(s)	126, 240
MnlI	CCTC	9 cut(s)	21, 27, 149, 179, 208, 217, 264, 302, 536
MslI	CAYNNNNRTG	2 cut(s)	396, 402
MspI	CCGG	4 cut(s)	142, 171, 235, 577
MspR9I	CCNGG	2 cut(s)	172, 577
MunI	CAATTG	1 cut(s)	126
MvnI	CGCG	4 cut(s)	53, 89, 121, 359
MwoI	GCNNNNNNNGC	1 cut(s)	195
NciI	CCSGG	2 cut(s)	172, 577
NcoI	CCATGG	1 cut(s)	397
NdeII	GATC	6 cut(s)	48, 84, 373, 440, 474, 557
NlaIII	CATG	3 cut(s)	135, 249, 401
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	263
NruI	TCGCGA	1 cut(s)	359
NspI	RCATGY	1 cut(s)	249
PceI	AGGCCT	2 cut(s)	189, 227
PciSI	GCTCTTC	1 cut(s)	553
PfeI	GAWTC	4 cut(s)	58, 70, 94, 354
PfoI	TCCNGGA	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	422
Ple19I	CGATCG	2 cut(s)	51, 87
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	2 cut(s)	44, 135
PsuI	RGATCY	2 cut(s)	373, 557
PvuI	CGATCG	2 cut(s)	51, 87
RruI	TCGCGA	1 cut(s)	359
RseI	CAYNNNNRTG	2 cut(s)	396, 402
SapI	GCTCTTC	1 cut(s)	553
SatI	GCNGC	1 cut(s)	421
Sau3AI	GATC	6 cut(s)	48, 84, 373, 440, 474, 557
Sau96I	GGNCC	2 cut(s)	44, 135
ScrFI	CCNGG	2 cut(s)	172, 577
SetI	ASST	9 cut(s)	13, 19, 31, 46, 270, 275, 304, 351, 498
SfaNI	GCATC	4 cut(s)	140, 165, 321, 520
SinI	GGWCC	2 cut(s)	44, 135
SmiMI	CAYNNNNRTG	2 cut(s)	396, 402
SmlI	CTYRAG	1 cut(s)	538
SmoI	CTYRAG	1 cut(s)	538
Sse9I	AATT	2 cut(s)	126, 240
SseBI	AGGCCT	2 cut(s)	189, 227
SsiI	CCGC	3 cut(s)	53, 89, 119
SspMI	CTAG	1 cut(s)	261
StuI	AGGCCT	2 cut(s)	189, 227
StyD4I	CCNGG	2 cut(s)	170, 575
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	1 cut(s)	429
TaiI	ACGT	3 cut(s)	270, 304, 498
TaqI	TCGA	2 cut(s)	164, 521
TaqII	GACCGA	1 cut(s)	297
TasI	AATT	2 cut(s)	126, 240
TfiI	GAWTC	4 cut(s)	58, 70, 94, 354
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	420
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	497
TspRI	CASTG	1 cut(s)	333
VpaK11BI	GGWCC	2 cut(s)	44, 135
XagI	CCTNNNNNAGG	1 cut(s)	33
XceI	RCATGY	1 cut(s)	249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	404
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.