Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004826

Physical Location & Seq

Genomic Coordinates Reverse (-)

11884526 .. 11885362

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1104900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTATCAAGATATTTGCTTGGAGTTTGATTTCGCTGTTTTGGAGTCGATTCGGCAACACCTTCTCGACGATGATTTTGATACTACTTTTCAAGAATCATCACCAACAGCTTCAGACAGTCCTTCCCCAATGTACAGCCGGAGTTTAAGCTTCAGCACCCTTTTTTCGACGGAAAGTTGGAGGGACATGCCGTTTAAAGTGGAACTGGAAGACACTAACGAAGTTGTTGGTGCTCTATCTAATGGCACTGACGGCTGGAGTTCATCATCAGATCACCATCACGTTGATGTTATTGATACCACACCTGTGAAACCGGAGCCTCAGAAGGTTGTCAGGGAAGAGATAGTGGCGGCGCGTGAGACTCACACACCACCGTCGCGGCAGCACTTTCGGGGAGTGAGGCGGAGGCCGTGGGGGAAGTACGCGGCAGAGATTAGAGATCCCAAGAAGAACGGGGCCAGGGTGTGGCTTGGGACTTATGAGACGGCTGAGGGTGCGGCATTGGCTTATGACCAAGCCGCTTTTAAGATGCGCGGCTCTAAAGCCAAGCTCAACTTCCCTCACCTTATTGGTTCGGAGGGATACGAACCGGTTCGAGTAACAGCAAAACGGCGTGCCCCGGAGTTCTCCACTTCTTCTTCCTCGTCAGAAAGTAGGTCGCCGAAGCCGAAAAGGAGGAATACTGGACTTTGCTTGGTGGTTGAAGCCGAGTCGGGTAGCACAAGCCGGGTAGAGATGGTTGAGATGAGCCAGCTGGCTGCTGTTGATCAGTGGCTAAGTGATCTTAACACAACAGTGTCGTCAATGCCAAATGAATTATTGATAAGTGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

279

Amino Acids

31.01

Weight (kDa)

5.47

Isoelectric Point (pI)

60.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	129 - 180	1.1e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44840
fragaria_vesca	FvH4_7g10030 FvH4_7g10040
malus_domestica	MD02G1213600.v1.1 MD07G1104900.v1.1 MD07G1105900.v1.1
prunus_persica	Prupe.2G129300_v2.0.a1 Prupe.2G129500_v2.0.a1 Prupe.2G129700_v2.0.a1
pyrus_communis	pycom07g09030
rosa_chinensis	RchiOBHm_Chr1g0347621 RchiOBHm_Chr1g0347631
rosa_laevigata	RLG00000028727 RLG00000028728
rosa_multiflora	Rmu_sc0006452.1_g000003 Rmu_sc0006452.1_g000008 Rmu_sc0010342.1_g000003 Rmu_sc0010342.1_g000008
rosa_roxburghii	Rroxscaffold_4G00307550 Rroxscaffold_4G00307580
rosa_rugosa	Rorug01G0188300 Rorug01G0188300
rosa_samantha	Rh1AG205700 Rh1AG206000 Rh1BG171300 Rh1BG171400 Rh1CG190800 Rh1DG201300 Rh1DG201400
rosa_wichuraiana	Rw0G001810 Rw1G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	465
AccII	CGCG	4 cut(s)	355, 379, 425, 534
AciI	CCGC	7 cut(s)	350, 379, 403, 425, 497, 519, 534
AclWI	GGATC	1 cut(s)	434
AcuI	CTGAAG	2 cut(s)	96, 136
AfaI	GTAC	2 cut(s)	134, 422
AfiI	CCNNNNNNNGG	1 cut(s)	465
AgeI	ACCGGT	1 cut(s)	589
AgsI	TTSAA	2 cut(s)	92, 704
AjnI	CCWGG	1 cut(s)	458
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
AleI	CACNNNNGTG	2 cut(s)	305, 794
AluBI	AGCT	4 cut(s)	110, 150, 550, 754
AluI	AGCT	4 cut(s)	110, 150, 550, 754
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	2 cut(s)	353, 476
AlwI	GGATC	1 cut(s)	434
AoxI	GGCC	2 cut(s)	407, 456
ApeKI	GCWGC	2 cut(s)	382, 758
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
AsiGI	ACCGGT	1 cut(s)	589
Asp700I	GAANNNNTTC	1 cut(s)	591
AspLEI	GCGC	2 cut(s)	355, 534
AspS9I	GGNCC	1 cut(s)	456
AsuC2I	CCSGG	2 cut(s)	620, 728
AsuHPI	GGTGA	3 cut(s)	93, 266, 554
BaeGI	GKGCMC	1 cut(s)	619
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	394, 745
BccI	CCATC	2 cut(s)	285, 730
BceAI	ACGGC	5 cut(s)	175, 268, 394, 501, 626
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BciT130I	CCWGG	1 cut(s)	460
BciVI	GTATCC	1 cut(s)	575
BclI	TGATCA	1 cut(s)	766
BcnI	CCSGG	2 cut(s)	620, 728
BcoDI	GTCTC	2 cut(s)	353, 476
BfuI	GTATCC	1 cut(s)	575
BisI	GCNGC	8 cut(s)	351, 380, 383, 426, 498, 519, 535, 759
BlsI	GCNGC	8 cut(s)	352, 381, 384, 427, 499, 520, 536, 760
Bme1390I	CCNGG	3 cut(s)	460, 620, 728
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	2 cut(s)	318, 457
BmrFI	CCNGG	3 cut(s)	460, 620, 728
BmsI	GCATC	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	216
BpmI	CTGGAG	1 cut(s)	277
Bpu10I	CCTNAGC	1 cut(s)	489
BpuMI	CCSGG	2 cut(s)	620, 728
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	410, 459, 618
BsaWI	WCCGGW	2 cut(s)	313, 589
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse118I	RCCGGY	1 cut(s)	589
Bse1I	ACTGG	2 cut(s)	210, 688
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	460
BseDI	CCNNGG	3 cut(s)	410, 459, 618
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMII	CTCAG	2 cut(s)	335, 480
BseNI	ACTGG	2 cut(s)	210, 688
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	2 cut(s)	394, 745
Bsh1236I	CGCG	4 cut(s)	355, 379, 425, 534
BshFI	GGCC	2 cut(s)	409, 458
BshTI	ACCGGT	1 cut(s)	589
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	5 cut(s)	139, 314, 590, 620, 727
BslFI	GGGAC	2 cut(s)	197, 487
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmAI	GTCTC	2 cut(s)	353, 476
BsmBI	CGTCTC	1 cut(s)	476
BsmFI	GGGAC	2 cut(s)	197, 487
BsnI	GGCC	2 cut(s)	409, 458
Bsp1286I	GDGCHC	2 cut(s)	235, 619
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	271, 439, 766, 781
BspACI	CCGC	7 cut(s)	350, 379, 403, 425, 497, 519, 534
BspANI	GGCC	2 cut(s)	409, 458
BspCNI	CTCAG	2 cut(s)	334, 481
BspFNI	CGCG	4 cut(s)	355, 379, 425, 534
BspLI	GGNNCC	2 cut(s)	318, 457
BspPI	GGATC	1 cut(s)	434
BsrFI	RCCGGY	1 cut(s)	589
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	210, 688
BssAI	RCCGGY	1 cut(s)	589
BssECI	CCNNGG	3 cut(s)	410, 459, 618
BssMI	GATC	4 cut(s)	271, 439, 766, 781
Bst2UI	CCWGG	1 cut(s)	460
Bst4CI	ACNGT	3 cut(s)	119, 375, 796
Bst6I	CTCTTC	1 cut(s)	333
BstAUI	TGTACA	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	615, 752, 756
BstDEI	CTNAG	3 cut(s)	321, 489, 776
BstDSI	CCRYGG	1 cut(s)	410
BstFNI	CGCG	4 cut(s)	355, 379, 425, 534
BstHHI	GCGC	2 cut(s)	355, 534
BstKTI	GATC	4 cut(s)	274, 442, 769, 784
BstMAI	GTCTC	2 cut(s)	353, 476
BstMBI	GATC	4 cut(s)	271, 439, 766, 781
BstMWI	GCNNNNNNNGC	3 cut(s)	252, 494, 503
BstNI	CCWGG	1 cut(s)	460
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	3 cut(s)	458, 618, 726
BstSLI	GKGCMC	1 cut(s)	619
BstUI	CGCG	4 cut(s)	355, 379, 425, 534
BstV1I	GCAGC	2 cut(s)	394, 745
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuI	GTATCC	1 cut(s)	575
BsuRI	GGCC	2 cut(s)	409, 458
BtgI	CCRYGG	1 cut(s)	410
BtsIMutI	CAGTG	3 cut(s)	246, 776, 801
Cac8I	GCNNGC	3 cut(s)	615, 752, 756
CfoI	GCGC	2 cut(s)	355, 534
Cfr10I	RCCGGY	1 cut(s)	589
Cfr13I	GGNCC	1 cut(s)	456
Csp6I	GTAC	2 cut(s)	133, 421
CspAI	ACCGGT	1 cut(s)	589
CviAII	CATG	1 cut(s)	187
CviQI	GTAC	2 cut(s)	133, 421
DdeI	CTNAG	3 cut(s)	321, 489, 776
DpnI	GATC	4 cut(s)	273, 441, 768, 783
DpnII	GATC	4 cut(s)	271, 439, 766, 781
DraI	TTTAAA	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	418
Eco57I	CTGAAG	2 cut(s)	96, 136
EcoRII	CCWGG	1 cut(s)	458
Esp3I	CGTCTC	1 cut(s)	476
FaeI	CATG	1 cut(s)	190
FaiI	YATR	4 cut(s)	188, 480, 510, 835
FalI	AAGNNNNNCTT	2 cut(s)	539, 571
FaqI	GGGAC	2 cut(s)	197, 487
FatI	CATG	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	766
Fnu4HI	GCNGC	8 cut(s)	351, 380, 383, 426, 498, 519, 535, 759
Fsp4HI	GCNGC	8 cut(s)	351, 380, 383, 426, 498, 519, 535, 759
GlaI	GCGC	2 cut(s)	354, 533
GluI	GCNGC	8 cut(s)	351, 380, 383, 426, 498, 519, 535, 759
GsuI	CTGGAG	1 cut(s)	277
HaeIII	GGCC	2 cut(s)	409, 458
HapII	CCGG	5 cut(s)	139, 314, 590, 620, 727
HhaI	GCGC	2 cut(s)	355, 534
Hin1II	CATG	1 cut(s)	190
Hin6I	GCGC	2 cut(s)	353, 532
HinP1I	GCGC	2 cut(s)	353, 532
HindIII	AAGCTT	1 cut(s)	148
HinfI	GANTC	5 cut(s)	44, 49, 95, 361, 710
HpaII	CCGG	5 cut(s)	139, 314, 590, 620, 727
HphI	GGTGA	3 cut(s)	93, 266, 554
Hpy188I	TCNGA	5 cut(s)	115, 271, 324, 577, 649
Hpy188III	TCNNGA	3 cut(s)	8, 65, 92
Hpy99I	CGWCG	3 cut(s)	71, 172, 379
HpyAV	CCTTC	3 cut(s)	71, 132, 319
HpyCH4III	ACNGT	3 cut(s)	119, 375, 796
HpyCH4IV	ACGT	1 cut(s)	282
HpyF10VI	GCNNNNNNNGC	3 cut(s)	252, 494, 503
HpyF3I	CTNAG	3 cut(s)	321, 489, 776
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	190
HspAI	GCGC	2 cut(s)	353, 532
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	4 cut(s)	271, 439, 766, 781
LmnI	GCTCC	1 cut(s)	316
Lsp1109I	GCAGC	2 cut(s)	394, 745
LweI	GCATC	1 cut(s)	519
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	4 cut(s)	273, 441, 768, 783
MboI	GATC	4 cut(s)	271, 439, 766, 781
MboII	GAAGA	5 cut(s)	221, 350, 460, 627, 630
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	2 cut(s)	235, 619
MluCI	AATT	1 cut(s)	815
MlyI	GAGTC	3 cut(s)	53, 355, 719
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	9 cut(s)	174, 330, 393, 399, 484, 570, 571, 652, 669
MroXI	GAANNNNTTC	1 cut(s)	591
MseI	TTAA	4 cut(s)	146, 195, 525, 786
MslI	CAYNNNNRTG	3 cut(s)	285, 305, 794
MspA1I	CMGCKG	1 cut(s)	754
MspI	CCGG	5 cut(s)	139, 314, 590, 620, 727
MspR9I	CCNGG	3 cut(s)	460, 620, 728
MvaI	CCWGG	1 cut(s)	460
MvnI	CGCG	4 cut(s)	355, 379, 425, 534
MwoI	GCNNNNNNNGC	3 cut(s)	252, 494, 503
NciI	CCSGG	2 cut(s)	620, 728
NdeII	GATC	4 cut(s)	271, 439, 766, 781
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	2 cut(s)	318, 457
NmeAIII	GCCGAG	1 cut(s)	733
NspI	RCATGY	1 cut(s)	190
OliI	CACNNNNGTG	2 cut(s)	305, 794
PcsI	WCGNNNNNNNCGW	1 cut(s)	665
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	2 cut(s)	49, 95
PflMI	CCANNNNNTGG	1 cut(s)	465
PinAI	ACCGGT	1 cut(s)	589
PkrI	GCNGC	8 cut(s)	352, 381, 384, 427, 499, 520, 536, 760
PleI	GAGTC	3 cut(s)	52, 355, 718
PpsI	GAGTC	3 cut(s)	52, 355, 718
Psp6I	CCWGG	1 cut(s)	458
PspGI	CCWGG	1 cut(s)	458
PspN4I	GGNNCC	2 cut(s)	318, 457
PspPI	GGNCC	1 cut(s)	456
PsuI	RGATCY	1 cut(s)	439
PvuII	CAGCTG	1 cut(s)	754
RsaI	GTAC	2 cut(s)	134, 422
RsaNI	GTAC	2 cut(s)	133, 421
RseI	CAYNNNNRTG	3 cut(s)	285, 305, 794
SaqAI	TTAA	4 cut(s)	146, 195, 525, 786
SatI	GCNGC	8 cut(s)	351, 380, 383, 426, 498, 519, 535, 759
Sau3AI	GATC	4 cut(s)	271, 439, 766, 781
Sau96I	GGNCC	1 cut(s)	456
SchI	GAGTC	3 cut(s)	53, 355, 719
ScrFI	CCNGG	3 cut(s)	460, 620, 728
SduI	GDGCHC	2 cut(s)	235, 619
SfaNI	GCATC	1 cut(s)	519
SmiMI	CAYNNNNRTG	3 cut(s)	285, 305, 794
Sse9I	AATT	1 cut(s)	815
SsiI	CCGC	7 cut(s)	350, 379, 403, 425, 497, 519, 534
StyD4I	CCNGG	3 cut(s)	458, 618, 726
TaaI	ACNGT	3 cut(s)	119, 375, 796
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	4 cut(s)	47, 66, 167, 595
TasI	AATT	1 cut(s)	815
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	6 cut(s)	353, 382, 428, 500, 521, 537
TfiI	GAWTC	2 cut(s)	49, 95
Tru1I	TTAA	4 cut(s)	146, 195, 525, 786
Tru9I	TTAA	4 cut(s)	146, 195, 525, 786
TscAI	CASTG	3 cut(s)	253, 776, 801
TseI	GCWGC	2 cut(s)	382, 758
TspDTI	ATGAA	2 cut(s)	252, 828
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	3 cut(s)	253, 776, 801
Van91I	CCANNNNNTGG	1 cut(s)	465
XceI	RCATGY	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.