Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004826

Physical Location & Seq

Genomic Coordinates Reverse (-)

39498319 .. 39499469

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG201300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTTTGGAGAGATTGACTTGGAGTCTGATTTCGCTCTATTGGAGTCCATTCGCCAACACCTTCTCGACGATAATTTCGACACCACTTTCGATCTGGAAGCATCATCGCCAACAGCTTCGGGCTCTCCTCCTCCAAACTACTGCCGCAGTTTCAGCTTCGGCACCCTGTTCTCCGCAGAGAATTGGAGCGACTTGCCACTAAAAGTGGACAGCGACAGCGACGATACAGTCGTTTCCGATGCCGTGCCTGATGAAGTTACGGCATCGCCAGTGAAAGAGGAGCCTCAGGAGGTGGTAGAGGTACTAGAGGAGAGTGTGGTGGCGCCTGAGACTCACCCGCCGTCTTCGGGGAGGCACTTTCGGGGAGTGAGGAGGAGGCCGTGGGGGAAGTACGCGGCAGAGATTAGGGACCCGAAGAAAAACGGCAGCAGAGTTTGGCTTGGGACCTACGAAACGGCTGAGGACGCCGCATTGGCTTATGACCAAGCCGCTTTTAAGATGCGGGGCTCCAAAGCCAAGCTCAACTTCCCTCACCTTATCGGCTCAGAGGGATCGCAACCGGTTAGAATAACTCCCAAGCGGCGGTCCCCGGAATCTTATTCGTCATCTTCGTCTTCGACCTCGGAGAGCGGCTCGCCCAAGCCCAAAAGGCCAAATCTTGGAGTTGGCCCGGCGGCGGCTAAGGCCGAGTTCTGTGGCTCGATCCGAGTAGAGATGGTTGAGACGAGTCAGCTGGCTGTTGTTGATCAGAGGCTTAATGATTTTAATACAACAGTGGTGTCCATGCCACAAGAAGTAATGATAAGTGGTTATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

272

Amino Acids

29.74

Weight (kDa)

4.82

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	119 - 170	6.5e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44840
fragaria_vesca	FvH4_7g10030 FvH4_7g10040
malus_domestica	MD02G1213600.v1.1 MD07G1104900.v1.1 MD07G1105900.v1.1
prunus_persica	Prupe.2G129300_v2.0.a1 Prupe.2G129500_v2.0.a1 Prupe.2G129700_v2.0.a1
pyrus_communis	pycom07g09030
rosa_chinensis	RchiOBHm_Chr1g0347621 RchiOBHm_Chr1g0347631
rosa_laevigata	RLG00000028727 RLG00000028728
rosa_multiflora	Rmu_sc0006452.1_g000003 Rmu_sc0006452.1_g000008 Rmu_sc0010342.1_g000003 Rmu_sc0010342.1_g000008
rosa_roxburghii	Rroxscaffold_4G00307550 Rroxscaffold_4G00307580
rosa_rugosa	Rorug01G0188300 Rorug01G0188300
rosa_samantha	Rh1AG205700 Rh1AG206000 Rh1BG171300 Rh1BG171400 Rh1CG190800 Rh1DG201300 Rh1DG201400
rosa_wichuraiana	Rw0G001810 Rw1G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccB1I	GGYRCC	2 cut(s)	161, 322
AccB7I	CCANNNNNTGG	1 cut(s)	659
AccBSI	CCGCTC	1 cut(s)	630
AccII	CGCG	1 cut(s)	395
AclWI	GGATC	2 cut(s)	559, 697
AcyI	GRCGYC	2 cut(s)	323, 465
AfaI	GTAC	2 cut(s)	303, 392
AfiI	CCNNNNNNNGG	4 cut(s)	347, 582, 659, 676
AgeI	ACCGGT	1 cut(s)	559
AhdI	GACNNNNNGTC	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AluBI	AGCT	4 cut(s)	116, 156, 520, 733
AluI	AGCT	4 cut(s)	116, 156, 520, 733
Alw26I	GTCTC	2 cut(s)	323, 716
AlwI	GGATC	2 cut(s)	559, 697
AoxI	GGCC	4 cut(s)	377, 650, 667, 684
ApeKI	GCWGC	1 cut(s)	426
ArsI	GACNNNNNNTTYG	4 cut(s)	59, 71, 91, 103
AsiGI	ACCGGT	1 cut(s)	559
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	4 cut(s)	409, 444, 585, 668
AsuC2I	CCSGG	2 cut(s)	590, 671
AsuHPI	GGTGA	2 cut(s)	326, 524
AvaII	GGWCC	3 cut(s)	409, 444, 585
AxyI	CCTNAGG	1 cut(s)	285
BaeI	ACNNNNGTAYC	2 cut(s)	216, 249
BanI	GGYRCC	2 cut(s)	161, 322
BanII	GRGCYC	2 cut(s)	125, 509
BbsI	GAAGAC	2 cut(s)	336, 606
BbvCI	CCTCAGC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	438
BccI	CCATC	1 cut(s)	709
BceAI	ACGGC	6 cut(s)	227, 276, 325, 364, 439, 471
BclI	TGATCA	1 cut(s)	745
BcnI	CCSGG	2 cut(s)	590, 671
BcoDI	GTCTC	2 cut(s)	323, 716
BfaI	CTAG	1 cut(s)	305
BfoI	RGCGCY	1 cut(s)	326
BglI	GCCNNNNNGGC	2 cut(s)	473, 649
BisI	GCNGC	9 cut(s)	145, 396, 427, 468, 489, 581, 631, 675, 678
BlsI	GCNGC	9 cut(s)	146, 397, 428, 469, 490, 582, 632, 676, 679
Bme1390I	CCNGG	2 cut(s)	590, 671
Bme18I	GGWCC	3 cut(s)	409, 444, 585
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmgT120I	GGNCC	4 cut(s)	409, 444, 585, 668
BmiI	GGNNCC	8 cut(s)	163, 282, 324, 410, 411, 445, 508, 587
BmrFI	CCNGG	2 cut(s)	590, 671
BmsI	GCATC	4 cut(s)	110, 229, 272, 489
BpiI	GAAGAC	2 cut(s)	336, 606
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
Bpu10I	CCTNAGC	2 cut(s)	459, 681
BpuMI	CCSGG	2 cut(s)	590, 671
BsaHI	GRCGYC	2 cut(s)	323, 465
BsaJI	CCNNGG	3 cut(s)	380, 588, 621
BsaWI	WCCGGW	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	4 cut(s)	347, 582, 659, 676
Bse118I	RCCGGY	1 cut(s)	559
Bse1I	ACTGG	1 cut(s)	269
Bse21I	CCTNAGG	1 cut(s)	285
BseDI	CCNNGG	3 cut(s)	380, 588, 621
BseLI	CCNNNNNNNGG	4 cut(s)	347, 582, 659, 676
BseMII	CTCAG	4 cut(s)	299, 318, 450, 558
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	6 cut(s)	117, 120, 293, 323, 385, 388
BseXI	GCAGC	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	4 cut(s)	379, 652, 669, 686
BshNI	GGYRCC	2 cut(s)	161, 322
BshTI	ACCGGT	1 cut(s)	559
BsiSI	CCGG	3 cut(s)	560, 590, 671
BslFI	GGGAC	3 cut(s)	422, 457, 571
BslI	CCNNNNNNNGG	4 cut(s)	347, 582, 659, 676
BsmAI	GTCTC	2 cut(s)	323, 716
BsmBI	CGTCTC	1 cut(s)	716
BsmFI	GGGAC	3 cut(s)	422, 457, 571
BsnI	GGCC	4 cut(s)	379, 652, 669, 686
Bsp1286I	GDGCHC	2 cut(s)	125, 509
Bsp143I	GATC	4 cut(s)	91, 551, 702, 745
BspANI	GGCC	4 cut(s)	379, 652, 669, 686
BspCNI	CTCAG	4 cut(s)	298, 319, 451, 557
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	8 cut(s)	163, 282, 324, 410, 411, 445, 508, 587
BspPI	GGATC	2 cut(s)	559, 697
BspT107I	GGYRCC	2 cut(s)	161, 322
BsrBI	CCGCTC	1 cut(s)	630
BsrFI	RCCGGY	1 cut(s)	559
BsrI	ACTGG	1 cut(s)	269
BssAI	RCCGGY	1 cut(s)	559
BssECI	CCNNGG	3 cut(s)	380, 588, 621
BssMI	GATC	4 cut(s)	91, 551, 702, 745
BssNI	GRCGYC	2 cut(s)	323, 465
Bst4CI	ACNGT	2 cut(s)	229, 775
BstACI	GRCGYC	2 cut(s)	323, 465
BstC8I	GCNNGC	2 cut(s)	635, 735
BstDEI	CTNAG	5 cut(s)	285, 327, 459, 544, 681
BstDSI	CCRYGG	1 cut(s)	380
BstFNI	CGCG	1 cut(s)	395
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	4 cut(s)	94, 554, 705, 748
BstMAI	GTCTC	2 cut(s)	323, 716
BstMBI	GATC	4 cut(s)	91, 551, 702, 745
BstMWI	GCNNNNNNNGC	5 cut(s)	153, 464, 473, 649, 683
BstSCI	CCNGG	2 cut(s)	588, 669
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	1 cut(s)	438
BstV2I	GAAGAC	2 cut(s)	336, 606
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	4 cut(s)	379, 652, 669, 686
BtgI	CCRYGG	1 cut(s)	380
BtgZI	GCGATG	2 cut(s)	90, 249
BtsIMutI	CAGTG	2 cut(s)	276, 780
Cac8I	GCNNGC	2 cut(s)	635, 735
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	559
Cfr13I	GGNCC	4 cut(s)	409, 444, 585, 668
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	2 cut(s)	302, 391
CspAI	ACCGGT	1 cut(s)	559
CviAII	CATG	1 cut(s)	784
CviQI	GTAC	2 cut(s)	302, 391
DdeI	CTNAG	5 cut(s)	285, 327, 459, 544, 681
DinI	GGCGCC	1 cut(s)	324
DpnI	GATC	4 cut(s)	93, 553, 704, 747
DpnII	GATC	4 cut(s)	91, 551, 702, 745
DrdI	GACNNNNNNGTC	1 cut(s)	227
DriI	GACNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eam1105I	GACNNNNNGTC	1 cut(s)	22
Eco24I	GRGCYC	2 cut(s)	125, 509
Eco47I	GGWCC	3 cut(s)	409, 444, 585
Eco81I	CCTNAGG	1 cut(s)	285
EcoO109I	RGGNCCY	2 cut(s)	409, 444
EcoT38I	GRGCYC	2 cut(s)	125, 509
EgeI	GGCGCC	1 cut(s)	324
EheI	GGCGCC	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	716
FaeI	CATG	1 cut(s)	787
FaiI	YATR	3 cut(s)	480, 785, 813
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FaqI	GGGAC	3 cut(s)	422, 457, 571
FatI	CATG	1 cut(s)	783
FauI	CCCGC	2 cut(s)	345, 495
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	9 cut(s)	145, 396, 427, 468, 489, 581, 631, 675, 678
FriOI	GRGCYC	2 cut(s)	125, 509
Fsp4HI	GCNGC	9 cut(s)	145, 396, 427, 468, 489, 581, 631, 675, 678
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	9 cut(s)	145, 396, 427, 468, 489, 581, 631, 675, 678
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	4 cut(s)	379, 652, 669, 686
HapII	CCGG	3 cut(s)	560, 590, 671
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	1 cut(s)	325
Hin1I	GRCGYC	2 cut(s)	323, 465
Hin1II	CATG	1 cut(s)	787
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	5 cut(s)	23, 44, 331, 593, 727
HpaII	CCGG	3 cut(s)	560, 590, 671
HphI	GGTGA	2 cut(s)	326, 524
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	6 cut(s)	28, 238, 547, 625, 707, 750
Hpy188III	TCNNGA	3 cut(s)	65, 95, 287
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	2 cut(s)	71, 224
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	229, 775
HpyF10VI	GCNNNNNNNGC	5 cut(s)	153, 464, 473, 649, 683
HpyF3I	CTNAG	5 cut(s)	285, 327, 459, 544, 681
Hsp92I	GRCGYC	2 cut(s)	323, 465
Hsp92II	CATG	1 cut(s)	787
HspAI	GCGC	1 cut(s)	323
KasI	GGCGCC	1 cut(s)	322
KflI	GGGWCCC	1 cut(s)	409
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	4 cut(s)	91, 551, 702, 745
LmnI	GCTCC	3 cut(s)	186, 280, 512
Lsp1109I	GCAGC	1 cut(s)	438
LweI	GCATC	4 cut(s)	110, 229, 272, 489
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	4 cut(s)	93, 553, 704, 747
MbiI	CCGCTC	1 cut(s)	630
MboI	GATC	4 cut(s)	91, 551, 702, 745
MboII	GAAGA	4 cut(s)	336, 427, 600, 606
MhlI	GDGCHC	2 cut(s)	125, 509
MluCI	AATT	2 cut(s)	73, 181
Mly113I	GGCGCC	1 cut(s)	323
MlyI	GAGTC	4 cut(s)	32, 53, 325, 736
MseI	TTAA	3 cut(s)	495, 756, 765
MspA1I	CMGCKG	1 cut(s)	733
MspI	CCGG	3 cut(s)	560, 590, 671
MspR9I	CCNGG	2 cut(s)	590, 671
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	5 cut(s)	153, 464, 473, 649, 683
NarI	GGCGCC	1 cut(s)	323
NciI	CCSGG	2 cut(s)	590, 671
NdeII	GATC	4 cut(s)	91, 551, 702, 745
NlaIII	CATG	1 cut(s)	787
NlaIV	GGNNCC	8 cut(s)	163, 282, 324, 410, 411, 445, 508, 587
NmeAIII	GCCGAG	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 228, 608
PfeI	GAWTC	1 cut(s)	593
PflMI	CCANNNNNTGG	1 cut(s)	659
PinAI	ACCGGT	1 cut(s)	559
PkrI	GCNGC	9 cut(s)	146, 397, 428, 469, 490, 582, 632, 676, 679
PleI	GAGTC	4 cut(s)	31, 52, 325, 735
PluTI	GGCGCC	1 cut(s)	326
PpsI	GAGTC	4 cut(s)	31, 52, 325, 735
PpuMI	RGGWCCY	2 cut(s)	409, 444
Psp5II	RGGWCCY	2 cut(s)	409, 444
PspN4I	GGNNCC	8 cut(s)	163, 282, 324, 410, 411, 445, 508, 587
PspPI	GGNCC	4 cut(s)	409, 444, 585, 668
PspPPI	RGGWCCY	2 cut(s)	409, 444
PvuII	CAGCTG	1 cut(s)	733
RsaI	GTAC	2 cut(s)	303, 392
RsaNI	GTAC	2 cut(s)	302, 391
SaqAI	TTAA	3 cut(s)	495, 756, 765
SatI	GCNGC	9 cut(s)	145, 396, 427, 468, 489, 581, 631, 675, 678
Sau3AI	GATC	4 cut(s)	91, 551, 702, 745
Sau96I	GGNCC	4 cut(s)	409, 444, 585, 668
SchI	GAGTC	4 cut(s)	32, 53, 325, 736
ScrFI	CCNGG	2 cut(s)	590, 671
SduI	GDGCHC	2 cut(s)	125, 509
SfaNI	GCATC	4 cut(s)	110, 229, 272, 489
SfoI	GGCGCC	1 cut(s)	324
SinI	GGWCC	3 cut(s)	409, 444, 585
Sse9I	AATT	2 cut(s)	73, 181
SspDI	GGCGCC	1 cut(s)	322
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	2 cut(s)	588, 669
TaaI	ACNGT	2 cut(s)	229, 775
TaqI	TCGA	5 cut(s)	66, 78, 90, 617, 701
TasI	AATT	2 cut(s)	73, 181
TauI	GCSGC	8 cut(s)	147, 398, 470, 491, 583, 633, 677, 680
TfiI	GAWTC	1 cut(s)	593
Tru1I	TTAA	3 cut(s)	495, 756, 765
Tru9I	TTAA	3 cut(s)	495, 756, 765
TscAI	CASTG	2 cut(s)	276, 780
TseI	GCWGC	1 cut(s)	426
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	2 cut(s)	276, 780
Van91I	CCANNNNNTGG	1 cut(s)	659
VpaK11BI	GGWCC	3 cut(s)	409, 444, 585
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.