Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004826

Physical Location & Seq

Genomic Coordinates Reverse (-)

18671315 .. 18671986

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G129700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTACGGAGAGACAACCTTAGAACTAGAATCAAACTTGGCTCTTCTTGAGTCCATTCGCCACCATCTTCTTGATGATTTGGAGCCTCAGGCAACGAGTTTTAGCGGCAATAATGTCTCGGTGACTTTCCCCTTTTTCGTGAAGGAGAATTGGTGGGAATCATCTCTTGAAGCTGAATATGTGGACAACACCATGCAGGACATGCTTGAAGCTTTGCATGACGTAAATTACGTTGGATGTGTTGTGTCCGACGACGAGGTTCAATTGAAGGAACAACAAGTGGCGGCGGGTGCTGTTCACGCGCCAAGGGAGGAGAGGCATTATAGAGGCGTGAGAAGGAGGCCTTGGGGGAAGTTCGCGGCGGAGATAAGGGATCCGGCAAAGAACGGCGCGAGAGTGTGGCTTGGAACTTATGAGACCCCGGAGGACGCGGGGCTGGCTTATGATCAAGCCGCATTTAAGATTCGAGGTTGTAAAGCCAAGCTGAATTTTCCTCACTTGATTGGCTCGAGTAACATGGAGCCCGTTCGGGTGACCCCTAAGCGGCGCCGCTCGCCTGACCAATGCTCTTCTTCGTCCTCGTCTGCATACACATTGGATAATGGATCTCCCAAGCCAAAGCTAAGAGAGGCCGGGGTTGATAATCACTTGGCAGCTTCAGATATAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

224

Amino Acids

24.95

Weight (kDa)

5.41

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44840
fragaria_vesca	FvH4_7g10030 FvH4_7g10040
malus_domestica	MD02G1213600.v1.1 MD07G1104900.v1.1 MD07G1105900.v1.1
prunus_persica	Prupe.2G129300_v2.0.a1 Prupe.2G129500_v2.0.a1 Prupe.2G129700_v2.0.a1
pyrus_communis	pycom07g09030
rosa_chinensis	RchiOBHm_Chr1g0347621 RchiOBHm_Chr1g0347631
rosa_laevigata	RLG00000028727 RLG00000028728
rosa_multiflora	Rmu_sc0006452.1_g000003 Rmu_sc0006452.1_g000008 Rmu_sc0010342.1_g000003 Rmu_sc0010342.1_g000008
rosa_roxburghii	Rroxscaffold_4G00307550 Rroxscaffold_4G00307580
rosa_rugosa	Rorug01G0188300 Rorug01G0188300
rosa_samantha	Rh1AG205700 Rh1AG206000 Rh1BG171300 Rh1BG171400 Rh1CG190800 Rh1DG201300 Rh1DG201400
rosa_wichuraiana	Rw0G001810 Rw1G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	546
AccBSI	CCGCTC	1 cut(s)	552
AccII	CGCG	4 cut(s)	302, 359, 392, 431
AciI	CCGC	9 cut(s)	105, 284, 287, 359, 362, 431, 453, 544, 550
AclWI	GGATC	3 cut(s)	368, 381, 613
AcsI	RAATTY	1 cut(s)	487
AcuI	CTGAAG	1 cut(s)	642
AcyI	GRCGYC	1 cut(s)	547
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	543
AgsI	TTSAA	4 cut(s)	170, 209, 263, 268
AjuI	GAANNNNNNNTTGG	2 cut(s)	328, 360
AluBI	AGCT	5 cut(s)	173, 212, 484, 622, 656
AluI	AGCT	5 cut(s)	173, 212, 484, 622, 656
Alw26I	GTCTC	3 cut(s)	5, 121, 410
AlwI	GGATC	3 cut(s)	368, 381, 613
Ama87I	CYCGRG	1 cut(s)	508
AoxI	GGCC	2 cut(s)	341, 630
ApeKI	GCWGC	1 cut(s)	653
ApoI	RAATTY	1 cut(s)	487
AspLEI	GCGC	3 cut(s)	304, 392, 549
AsuC2I	CCSGG	2 cut(s)	422, 634
AsuHPI	GGTGA	2 cut(s)	133, 544
AvaI	CYCGRG	1 cut(s)	508
AxyI	CCTNAGG	1 cut(s)	87
BamHI	GGATCC	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	546
BanII	GRGCYC	1 cut(s)	525
BbvI	GCAGC	1 cut(s)	665
BccI	CCATC	1 cut(s)	72
BceAI	ACGGC	1 cut(s)	403
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	2 cut(s)	422, 634
BcoDI	GTCTC	3 cut(s)	5, 121, 410
BfaI	CTAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	550
BisI	GCNGC	7 cut(s)	106, 285, 360, 453, 545, 550, 654
BlsI	GCNGC	7 cut(s)	107, 286, 361, 454, 546, 551, 655
Bme1390I	CCNGG	2 cut(s)	422, 634
BmeT110I	CYCGRG	1 cut(s)	508
BmiI	GGNNCC	4 cut(s)	84, 375, 522, 548
BmrFI	CCNGG	2 cut(s)	422, 634
Bpu10I	CCTNAGC	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	2 cut(s)	422, 634
BsaHI	GRCGYC	1 cut(s)	547
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	4 cut(s)	305, 344, 420, 633
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse21I	CCTNAGG	1 cut(s)	87
BseDI	CCNNGG	4 cut(s)	305, 344, 420, 633
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMII	CTCAG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	665
Bsh1236I	CGCG	4 cut(s)	302, 359, 392, 431
BshFI	GGCC	2 cut(s)	343, 632
BshNI	GGYRCC	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	3 cut(s)	377, 422, 633
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmAI	GTCTC	3 cut(s)	5, 121, 410
BsnI	GGCC	2 cut(s)	343, 632
Bso31I	GGTCTC	1 cut(s)	410
BsoBI	CYCGRG	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	525
Bsp143I	GATC	3 cut(s)	373, 445, 605
BspACI	CCGC	9 cut(s)	105, 284, 287, 359, 362, 431, 453, 544, 550
BspANI	GGCC	2 cut(s)	343, 632
BspCNI	CTCAG	1 cut(s)	100
BspFNI	CGCG	4 cut(s)	302, 359, 392, 431
BspLI	GGNNCC	4 cut(s)	84, 375, 522, 548
BspPI	GGATC	3 cut(s)	368, 381, 613
BspQI	GCTCTTC	2 cut(s)	48, 574
BspT107I	GGYRCC	1 cut(s)	546
BspTNI	GGTCTC	1 cut(s)	410
BsrBI	CCGCTC	1 cut(s)	552
BssECI	CCNNGG	4 cut(s)	305, 344, 420, 633
BssMI	GATC	3 cut(s)	373, 445, 605
BssNI	GRCGYC	1 cut(s)	547
BssT1I	CCWWGG	2 cut(s)	305, 344
Bst6I	CTCTTC	2 cut(s)	48, 574
BstACI	GRCGYC	1 cut(s)	547
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstC8I	GCNNGC	2 cut(s)	438, 554
BstDEI	CTNAG	4 cut(s)	19, 87, 540, 623
BstEII	GGTNACC	1 cut(s)	532
BstF5I	GGATG	1 cut(s)	242
BstFNI	CGCG	4 cut(s)	302, 359, 392, 431
BstH2I	RGCGCY	1 cut(s)	550
BstHHI	GCGC	3 cut(s)	304, 392, 549
BstKTI	GATC	3 cut(s)	376, 448, 608
BstMAI	GTCTC	3 cut(s)	5, 121, 410
BstMBI	GATC	3 cut(s)	373, 445, 605
BstMWI	GCNNNNNNNGC	5 cut(s)	202, 290, 299, 437, 553
BstNSI	RCATGY	1 cut(s)	205
BstPI	GGTNACC	1 cut(s)	532
BstSCI	CCNGG	2 cut(s)	420, 632
BstUI	CGCG	4 cut(s)	302, 359, 392, 431
BstV1I	GCAGC	1 cut(s)	665
BstX2I	RGATCY	2 cut(s)	373, 605
BstYI	RGATCY	2 cut(s)	373, 605
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	343, 632
BtsCI	GGATG	1 cut(s)	242
Cac8I	GCNNGC	2 cut(s)	438, 554
CfoI	GCGC	3 cut(s)	304, 392, 549
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	4 cut(s)	193, 202, 218, 517
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	4 cut(s)	19, 87, 540, 623
DinI	GGCGCC	1 cut(s)	548
DpnI	GATC	3 cut(s)	375, 447, 607
DpnII	GATC	3 cut(s)	373, 445, 605
Eam1104I	CTCTTC	2 cut(s)	48, 574
EarI	CTCTTC	2 cut(s)	48, 574
EciI	GGCGGA	1 cut(s)	377
Eco130I	CCWWGG	2 cut(s)	305, 344
Eco147I	AGGCCT	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	410
Eco57I	CTGAAG	1 cut(s)	642
Eco81I	CCTNAGG	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	508
Eco91I	GGTNACC	1 cut(s)	532
EcoO65I	GGTNACC	1 cut(s)	532
EcoT14I	CCWWGG	2 cut(s)	305, 344
EcoT38I	GRGCYC	1 cut(s)	525
EgeI	GGCGCC	1 cut(s)	548
EheI	GGCGCC	1 cut(s)	548
ErhI	CCWWGG	2 cut(s)	305, 344
FaeI	CATG	4 cut(s)	196, 205, 221, 520
FalI	AAGNNNNNCTT	2 cut(s)	328, 360
FatI	CATG	4 cut(s)	192, 201, 217, 516
FauI	CCCGC	2 cut(s)	280, 424
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	7 cut(s)	106, 285, 360, 453, 545, 550, 654
FokI	GGATG	1 cut(s)	249
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	7 cut(s)	106, 285, 360, 453, 545, 550, 654
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	3 cut(s)	303, 391, 548
GluI	GCNGC	7 cut(s)	106, 285, 360, 453, 545, 550, 654
HaeII	RGCGCY	1 cut(s)	550
HaeIII	GGCC	2 cut(s)	343, 632
HapII	CCGG	3 cut(s)	377, 422, 633
HgaI	GACGC	1 cut(s)	437
HhaI	GCGC	3 cut(s)	304, 392, 549
Hin1I	GRCGYC	1 cut(s)	547
Hin1II	CATG	4 cut(s)	196, 205, 221, 520
Hin6I	GCGC	3 cut(s)	302, 390, 547
HinP1I	GCGC	3 cut(s)	302, 390, 547
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	4 cut(s)	29, 50, 158, 463
HpaII	CCGG	3 cut(s)	377, 422, 633
HphI	GGTGA	2 cut(s)	133, 544
Hpy166II	GTNNAC	2 cut(s)	184, 298
Hpy188I	TCNGA	2 cut(s)	250, 661
Hpy188III	TCNNGA	4 cut(s)	47, 71, 139, 167
Hpy8I	GTNNAC	2 cut(s)	184, 298
Hpy99I	CGWCG	2 cut(s)	254, 257
HpyAV	CCTTC	3 cut(s)	136, 262, 330
HpyCH4IV	ACGT	2 cut(s)	222, 231
HpyCH4V	TGCA	3 cut(s)	196, 217, 587
HpyF10VI	GCNNNNNNNGC	5 cut(s)	202, 290, 299, 437, 553
HpyF3I	CTNAG	4 cut(s)	19, 87, 540, 623
HpySE526I	ACGT	2 cut(s)	222, 231
Hsp92I	GRCGYC	1 cut(s)	547
Hsp92II	CATG	4 cut(s)	196, 205, 221, 520
HspAI	GCGC	3 cut(s)	302, 390, 547
KasI	GGCGCC	1 cut(s)	546
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	3 cut(s)	373, 445, 605
LguI	GCTCTTC	2 cut(s)	48, 574
LmnI	GCTCC	2 cut(s)	82, 520
LpnPI	CCDG	7 cut(s)	74, 182, 390, 422, 435, 570, 646
Lsp1109I	GCAGC	1 cut(s)	665
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	2 cut(s)	222, 231
MaeIII	GTNAC	3 cut(s)	121, 512, 532
MalI	GATC	3 cut(s)	375, 447, 607
MbiI	CCGCTC	1 cut(s)	552
MboI	GATC	3 cut(s)	373, 445, 605
MboII	GAAGA	4 cut(s)	35, 59, 561, 564
MfeI	CAATTG	1 cut(s)	263
MflI	RGATCY	2 cut(s)	373, 605
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	5 cut(s)	148, 226, 263, 487, 667
Mly113I	GGCGCC	1 cut(s)	547
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	2 cut(s)	214, 273
MseI	TTAA	2 cut(s)	459, 670
MspI	CCGG	3 cut(s)	377, 422, 633
MspR9I	CCNGG	2 cut(s)	422, 634
MunI	CAATTG	1 cut(s)	263
MvnI	CGCG	4 cut(s)	302, 359, 392, 431
MwoI	GCNNNNNNNGC	5 cut(s)	202, 290, 299, 437, 553
NarI	GGCGCC	1 cut(s)	547
NciI	CCSGG	2 cut(s)	422, 634
NdeII	GATC	3 cut(s)	373, 445, 605
NlaIII	CATG	4 cut(s)	196, 205, 221, 520
NlaIV	GGNNCC	4 cut(s)	84, 375, 522, 548
NmuCI	GTSAC	2 cut(s)	121, 532
NspI	RCATGY	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	508
PceI	AGGCCT	1 cut(s)	343
PciSI	GCTCTTC	2 cut(s)	48, 574
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PfeI	GAWTC	3 cut(s)	29, 158, 463
PkrI	GCNGC	7 cut(s)	107, 286, 361, 454, 546, 551, 655
PleI	GAGTC	1 cut(s)	58
PluTI	GGCGCC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	58
PspEI	GGTNACC	1 cut(s)	532
PspN4I	GGNNCC	4 cut(s)	84, 375, 522, 548
PspXI	VCTCGAGB	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	373, 605
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SapI	GCTCTTC	2 cut(s)	48, 574
SaqAI	TTAA	2 cut(s)	459, 670
SatI	GCNGC	7 cut(s)	106, 285, 360, 453, 545, 550, 654
Sau3AI	GATC	3 cut(s)	373, 445, 605
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	422, 634
SduI	GDGCHC	1 cut(s)	525
SfoI	GGCGCC	1 cut(s)	548
Sfr274I	CTCGAG	1 cut(s)	508
SlaI	CTCGAG	1 cut(s)	508
SmlI	CTYRAG	2 cut(s)	47, 508
SmoI	CTYRAG	2 cut(s)	47, 508
Sse9I	AATT	5 cut(s)	148, 226, 263, 487, 667
SseBI	AGGCCT	1 cut(s)	343
SsiI	CCGC	9 cut(s)	105, 284, 287, 359, 362, 431, 453, 544, 550
SspDI	GGCGCC	1 cut(s)	546
SspMI	CTAG	1 cut(s)	26
StuI	AGGCCT	1 cut(s)	343
StyD4I	CCNGG	2 cut(s)	420, 632
StyI	CCWWGG	2 cut(s)	305, 344
TaiI	ACGT	2 cut(s)	225, 234
TaqI	TCGA	2 cut(s)	466, 509
TasI	AATT	5 cut(s)	148, 226, 263, 487, 667
TauI	GCSGC	6 cut(s)	108, 287, 362, 455, 547, 552
TfiI	GAWTC	3 cut(s)	29, 158, 463
Tru1I	TTAA	2 cut(s)	459, 670
Tru9I	TTAA	2 cut(s)	459, 670
TseFI	GTSAC	2 cut(s)	121, 532
TseI	GCWGC	1 cut(s)	653
Tsp45I	GTSAC	2 cut(s)	121, 532
TspGWI	ACGGA	1 cut(s)	21
XapI	RAATTY	1 cut(s)	487
XceI	RCATGY	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	508
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.