Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004826

Physical Location & Seq

Genomic Coordinates Forward (+)

27101033 .. 27101854

Gene Structure 822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028728

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTTTGGAGAGATCGACTTGGAGTCTGATTTCGCTCTATTGGAGTCCATTCGCCAACACCTTCTCAACGATAATTTCGACACCACTTTCGATCTGGAAGCATTATCGCCAACAGCTTCGGGCTCTCCTCCTCCAATCGACTGCCTCAGTTTCAGCTTCGGCACCCTTTTCTCCGGAGAGAATTGGAGCGACTTGCCACTAAAAGTGGACAGCGACAGCGACGATACAGTCGTTTCCGATGCCGTGCCTGATGAAGTTACGGCATCGCCAGTGAAAGCGGAGCCTCAGGAGGTGGTAGAGGTAATAGAGGGGGAGAGTGTGGTGGCGCGTGAAACTCAAGCGCCGTCGTCAGGGAGGCACTTTCGGGGAGTGAGGCGGAGGCCGTGGGGGAAGTACGCGGCGGAAATTAGGGACCCGAAGAAAAACGGCAGCAGAGTTTGGCTTGGGACCTACGAAACGGCTGAGGACGCCGCATTGGCTTATGACCAAGCCGCTTTTAAGATGCGGGGCTCCAAAGCCAAGCTCAACTTCCCTCACCTTATCGGCTCAGAGGGATCGCACCCGGTTAGAATAACTCCCAAGCGGCGGTCCCCGGAATCTTATTCGTCATCTTCGTCTTCGACTTCGGAGAGCGGCTCGCCCAAGCCCAAAAGGCCAAATCTTGGAGTTGGCCCGGCGGCTGCTGAGGTCGAGTCCGGTGGCTCGAGCCGAGTTGAGATGGTTGAGACGAGTCAGCTGGCTGTTGTTGATCAGAGGCTTAATGATTTTAATACAACAGTGGTGTCCATGCCACAAGAAGTAATGATAGGTGGTTATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

274

Amino Acids

29.56

Weight (kDa)

4.76

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	120 - 171	6.5e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44840
fragaria_vesca	FvH4_7g10030 FvH4_7g10040
malus_domestica	MD02G1213600.v1.1 MD07G1104900.v1.1 MD07G1105900.v1.1
prunus_persica	Prupe.2G129300_v2.0.a1 Prupe.2G129500_v2.0.a1 Prupe.2G129700_v2.0.a1
pyrus_communis	pycom07g09030
rosa_chinensis	RchiOBHm_Chr1g0347621 RchiOBHm_Chr1g0347631
rosa_laevigata	RLG00000028727 RLG00000028728
rosa_multiflora	Rmu_sc0006452.1_g000003 Rmu_sc0006452.1_g000008 Rmu_sc0010342.1_g000003 Rmu_sc0010342.1_g000008
rosa_roxburghii	Rroxscaffold_4G00307550 Rroxscaffold_4G00307580
rosa_rugosa	Rorug01G0188300 Rorug01G0188300
rosa_samantha	Rh1AG205700 Rh1AG206000 Rh1BG171300 Rh1BG171400 Rh1CG190800 Rh1DG201300 Rh1DG201400
rosa_wichuraiana	Rw0G001810 Rw1G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	161
AccB7I	CCANNNNNTGG	1 cut(s)	662
AccBSI	CCGCTC	1 cut(s)	633
AccII	CGCG	2 cut(s)	328, 398
AccIII	TCCGGA	1 cut(s)	173
AclWI	GGATC	1 cut(s)	562
AcyI	GRCGYC	1 cut(s)	468
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	3 cut(s)	350, 585, 662
AhdI	GACNNNNNGTC	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
AluBI	AGCT	4 cut(s)	116, 156, 523, 736
AluI	AGCT	4 cut(s)	116, 156, 523, 736
Alw26I	GTCTC	1 cut(s)	719
AlwI	GGATC	1 cut(s)	562
Ama87I	CYCGRG	1 cut(s)	703
Aor13HI	TCCGGA	1 cut(s)	173
AoxI	GGCC	3 cut(s)	380, 653, 670
ApeKI	GCWGC	2 cut(s)	429, 680
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AspLEI	GCGC	2 cut(s)	328, 343
AspS9I	GGNCC	4 cut(s)	412, 447, 588, 671
AsuC2I	CCSGG	3 cut(s)	563, 593, 674
AsuHPI	GGTGA	1 cut(s)	527
AvaI	CYCGRG	1 cut(s)	703
AvaII	GGWCC	3 cut(s)	412, 447, 588
AxyI	CCTNAGG	1 cut(s)	285
BaeI	ACNNNNGTAYC	2 cut(s)	216, 249
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	2 cut(s)	125, 512
BbsI	GAAGAC	1 cut(s)	609
BbvCI	CCTCAGC	2 cut(s)	462, 684
BbvI	GCAGC	2 cut(s)	441, 667
BccI	CCATC	1 cut(s)	712
BceAI	ACGGC	6 cut(s)	227, 276, 328, 367, 442, 474
BclI	TGATCA	1 cut(s)	748
BcnI	CCSGG	3 cut(s)	563, 593, 674
BcoDI	GTCTC	1 cut(s)	719
BfoI	RGCGCY	1 cut(s)	344
BglI	GCCNNNNNGGC	2 cut(s)	476, 652
BisI	GCNGC	8 cut(s)	399, 430, 471, 492, 584, 634, 678, 681
BlsI	GCNGC	8 cut(s)	400, 431, 472, 493, 585, 635, 679, 682
Bme1390I	CCNGG	3 cut(s)	563, 593, 674
Bme18I	GGWCC	3 cut(s)	412, 447, 588
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	703
BmgT120I	GGNCC	4 cut(s)	412, 447, 588, 671
BmiI	GGNNCC	7 cut(s)	163, 282, 413, 414, 448, 511, 590
BmrFI	CCNGG	3 cut(s)	563, 593, 674
BmsI	GCATC	3 cut(s)	229, 272, 492
BpiI	GAAGAC	1 cut(s)	609
BplI	GAGNNNNNCTC	2 cut(s)	620, 652
Bpu10I	CCTNAGC	2 cut(s)	462, 684
BpuEI	CTTGAG	1 cut(s)	321
BpuMI	CCSGG	3 cut(s)	563, 593, 674
BsaHI	GRCGYC	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	383, 591
BsaWI	WCCGGW	2 cut(s)	173, 695
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 585, 662
Bse1I	ACTGG	1 cut(s)	269
Bse21I	CCTNAGG	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	383, 591
BseLI	CCNNNNNNNGG	3 cut(s)	350, 585, 662
BseMII	CTCAG	5 cut(s)	160, 299, 453, 561, 675
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	2 cut(s)	117, 120
BseXI	GCAGC	2 cut(s)	441, 667
Bsh1236I	CGCG	2 cut(s)	328, 398
BshFI	GGCC	3 cut(s)	382, 655, 672
BshNI	GGYRCC	1 cut(s)	161
BsiHKCI	CYCGRG	1 cut(s)	703
BsiSI	CCGG	5 cut(s)	174, 563, 593, 674, 696
BslFI	GGGAC	3 cut(s)	425, 460, 574
BslI	CCNNNNNNNGG	3 cut(s)	350, 585, 662
BsmAI	GTCTC	1 cut(s)	719
BsmBI	CGTCTC	1 cut(s)	719
BsmFI	GGGAC	3 cut(s)	425, 460, 574
BsnI	GGCC	3 cut(s)	382, 655, 672
BsoBI	CYCGRG	1 cut(s)	703
Bsp1286I	GDGCHC	2 cut(s)	125, 512
Bsp13I	TCCGGA	1 cut(s)	173
Bsp143I	GATC	4 cut(s)	12, 91, 554, 748
BspANI	GGCC	3 cut(s)	382, 655, 672
BspCNI	CTCAG	5 cut(s)	159, 298, 454, 560, 676
BspEI	TCCGGA	1 cut(s)	173
BspFNI	CGCG	2 cut(s)	328, 398
BspLI	GGNNCC	7 cut(s)	163, 282, 413, 414, 448, 511, 590
BspPI	GGATC	1 cut(s)	562
BspT107I	GGYRCC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	633
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	383, 591
BssMI	GATC	4 cut(s)	12, 91, 554, 748
BssNI	GRCGYC	1 cut(s)	468
Bst4CI	ACNGT	2 cut(s)	229, 778
BstACI	GRCGYC	1 cut(s)	468
BstC8I	GCNNGC	2 cut(s)	638, 738
BstDEI	CTNAG	5 cut(s)	146, 285, 462, 547, 684
BstDSI	CCRYGG	1 cut(s)	383
BstFNI	CGCG	2 cut(s)	328, 398
BstH2I	RGCGCY	1 cut(s)	344
BstHHI	GCGC	2 cut(s)	328, 343
BstKTI	GATC	4 cut(s)	15, 94, 557, 751
BstMAI	GTCTC	1 cut(s)	719
BstMBI	GATC	4 cut(s)	12, 91, 554, 748
BstMWI	GCNNNNNNNGC	3 cut(s)	467, 476, 652
BstSCI	CCNGG	3 cut(s)	561, 591, 672
BstUI	CGCG	2 cut(s)	328, 398
BstV1I	GCAGC	2 cut(s)	441, 667
BstV2I	GAAGAC	1 cut(s)	609
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	3 cut(s)	382, 655, 672
BtgI	CCRYGG	1 cut(s)	383
BtgZI	GCGATG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	276, 783
Cac8I	GCNNGC	2 cut(s)	638, 738
CfoI	GCGC	2 cut(s)	328, 343
Cfr13I	GGNCC	4 cut(s)	412, 447, 588, 671
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	1 cut(s)	787
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	5 cut(s)	146, 285, 462, 547, 684
DpnI	GATC	4 cut(s)	14, 93, 556, 750
DpnII	GATC	4 cut(s)	12, 91, 554, 748
DrdI	GACNNNNNNGTC	1 cut(s)	227
DriI	GACNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EciI	GGCGGA	2 cut(s)	391, 416
Eco24I	GRGCYC	2 cut(s)	125, 512
Eco47I	GGWCC	3 cut(s)	412, 447, 588
Eco81I	CCTNAGG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	703
EcoO109I	RGGNCCY	2 cut(s)	412, 447
EcoT38I	GRGCYC	2 cut(s)	125, 512
Esp3I	CGTCTC	1 cut(s)	719
FaeI	CATG	1 cut(s)	790
FaiI	YATR	3 cut(s)	483, 788, 816
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	3 cut(s)	425, 460, 574
FatI	CATG	1 cut(s)	786
FauI	CCCGC	1 cut(s)	498
FbaI	TGATCA	1 cut(s)	748
Fnu4HI	GCNGC	8 cut(s)	399, 430, 471, 492, 584, 634, 678, 681
FriOI	GRGCYC	2 cut(s)	125, 512
Fsp4HI	GCNGC	8 cut(s)	399, 430, 471, 492, 584, 634, 678, 681
GlaI	GCGC	2 cut(s)	327, 342
GluI	GCNGC	8 cut(s)	399, 430, 471, 492, 584, 634, 678, 681
HaeII	RGCGCY	1 cut(s)	344
HaeIII	GGCC	3 cut(s)	382, 655, 672
HapII	CCGG	5 cut(s)	174, 563, 593, 674, 696
HgaI	GACGC	1 cut(s)	476
HhaI	GCGC	2 cut(s)	328, 343
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	1 cut(s)	790
Hin6I	GCGC	2 cut(s)	326, 341
HinP1I	GCGC	2 cut(s)	326, 341
HinfI	GANTC	5 cut(s)	23, 44, 596, 692, 730
HpaII	CCGG	5 cut(s)	174, 563, 593, 674, 696
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	5 cut(s)	28, 238, 550, 628, 753
Hpy188III	TCNNGA	3 cut(s)	95, 174, 287
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	2 cut(s)	224, 349
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	229, 778
HpyF10VI	GCNNNNNNNGC	3 cut(s)	467, 476, 652
HpyF3I	CTNAG	5 cut(s)	146, 285, 462, 547, 684
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	1 cut(s)	790
HspAI	GCGC	2 cut(s)	326, 341
KflI	GGGWCCC	1 cut(s)	412
Kpn2I	TCCGGA	1 cut(s)	173
Ksp22I	TGATCA	1 cut(s)	748
Kzo9I	GATC	4 cut(s)	12, 91, 554, 748
LmnI	GCTCC	3 cut(s)	186, 280, 515
Lsp1109I	GCAGC	2 cut(s)	441, 667
LweI	GCATC	3 cut(s)	229, 272, 492
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	4 cut(s)	14, 93, 556, 750
MbiI	CCGCTC	1 cut(s)	633
MboI	GATC	4 cut(s)	12, 91, 554, 748
MboII	GAAGA	3 cut(s)	430, 603, 609
MhlI	GDGCHC	2 cut(s)	125, 512
MluCI	AATT	3 cut(s)	73, 181, 405
MlyI	GAGTC	4 cut(s)	32, 53, 701, 739
MroI	TCCGGA	1 cut(s)	173
MseI	TTAA	3 cut(s)	498, 759, 768
MspA1I	CMGCKG	1 cut(s)	736
MspI	CCGG	5 cut(s)	174, 563, 593, 674, 696
MspR9I	CCNGG	3 cut(s)	563, 593, 674
MvnI	CGCG	2 cut(s)	328, 398
MwoI	GCNNNNNNNGC	3 cut(s)	467, 476, 652
NciI	CCSGG	3 cut(s)	563, 593, 674
NdeII	GATC	4 cut(s)	12, 91, 554, 748
NlaIII	CATG	1 cut(s)	790
NlaIV	GGNNCC	7 cut(s)	163, 282, 413, 414, 448, 511, 590
NmeAIII	GCCGAG	1 cut(s)	734
PaeR7I	CTCGAG	1 cut(s)	703
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 228, 611
PfeI	GAWTC	1 cut(s)	596
PflMI	CCANNNNNTGG	1 cut(s)	662
PkrI	GCNGC	8 cut(s)	400, 431, 472, 493, 585, 635, 679, 682
PleI	GAGTC	4 cut(s)	31, 52, 700, 738
PpsI	GAGTC	4 cut(s)	31, 52, 700, 738
PpuMI	RGGWCCY	2 cut(s)	412, 447
Psp5II	RGGWCCY	2 cut(s)	412, 447
PspN4I	GGNNCC	7 cut(s)	163, 282, 413, 414, 448, 511, 590
PspPI	GGNCC	4 cut(s)	412, 447, 588, 671
PspPPI	RGGWCCY	2 cut(s)	412, 447
PspXI	VCTCGAGB	1 cut(s)	703
PvuII	CAGCTG	1 cut(s)	736
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SaqAI	TTAA	3 cut(s)	498, 759, 768
SatI	GCNGC	8 cut(s)	399, 430, 471, 492, 584, 634, 678, 681
Sau3AI	GATC	4 cut(s)	12, 91, 554, 748
Sau96I	GGNCC	4 cut(s)	412, 447, 588, 671
SchI	GAGTC	4 cut(s)	32, 53, 701, 739
ScrFI	CCNGG	3 cut(s)	563, 593, 674
SduI	GDGCHC	2 cut(s)	125, 512
SfaNI	GCATC	3 cut(s)	229, 272, 492
Sfr274I	CTCGAG	1 cut(s)	703
SinI	GGWCC	3 cut(s)	412, 447, 588
SlaI	CTCGAG	1 cut(s)	703
SmlI	CTYRAG	2 cut(s)	336, 703
SmoI	CTYRAG	2 cut(s)	336, 703
Sse9I	AATT	3 cut(s)	73, 181, 405
StyD4I	CCNGG	3 cut(s)	561, 591, 672
TaaI	ACNGT	2 cut(s)	229, 778
TaqI	TCGA	7 cut(s)	15, 78, 90, 138, 620, 690, 704
TasI	AATT	3 cut(s)	73, 181, 405
TauI	GCSGC	6 cut(s)	401, 473, 494, 586, 636, 680
TfiI	GAWTC	1 cut(s)	596
Tru1I	TTAA	3 cut(s)	498, 759, 768
Tru9I	TTAA	3 cut(s)	498, 759, 768
TscAI	CASTG	2 cut(s)	276, 783
TseI	GCWGC	2 cut(s)	429, 680
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	2 cut(s)	276, 783
Van91I	CCANNNNNTGG	1 cut(s)	662
VpaK11BI	GGWCC	3 cut(s)	412, 447, 588
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XhoI	CTCGAG	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.