Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006452.1

Orthogroup ID

OG0004826

Physical Location & Seq

Genomic Coordinates Forward (+)

29803 .. 30435

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006452.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgtacggacagacaaccctagagtcagtagattccgacttggctcttcttgaatccattcgacaacaccttctaggcgatcatatggagcctccggcaaccatcttcggcggcgacgtagacgacatcatccccttgtttttctccagttctactgctgcttcaacctgcttgagtgggctttttaccacggagaactggtgggaatcggcgctaaaacccgaggactctgaatccgaagctgtaagtacaccggaggaggaggaggttacgttgaggaagcaagctcagaatgcgtcggttaaacgtgatgtgcacgcacccagggtggagaggcatttcaggggcgtgaggaggaggccttgggggaagtacgcggcggagattagagatccggcgaagaatggcgcgagagtgtggctcgggacttacgagactcccgaggacgctggtctggcttacgaccgagctgctttcaaactgcgcggctgtaaagccaaactcaactttcctcacttgattggctcgaacagcgttgagccggttagggttaccccgaagcggcggcgctcgccggaacagtcctcgtcggcatcggaggacaacgagtctcccaaggcaaagagaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

210

Amino Acids

23.45

Weight (kDa)

6.24

Isoelectric Point (pI)

70.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44840
fragaria_vesca	FvH4_7g10030 FvH4_7g10040
malus_domestica	MD02G1213600.v1.1 MD07G1104900.v1.1 MD07G1105900.v1.1
prunus_persica	Prupe.2G129300_v2.0.a1 Prupe.2G129500_v2.0.a1 Prupe.2G129700_v2.0.a1
pyrus_communis	pycom07g09030
rosa_chinensis	RchiOBHm_Chr1g0347621 RchiOBHm_Chr1g0347631
rosa_laevigata	RLG00000028727 RLG00000028728
rosa_multiflora	Rmu_sc0006452.1_g000003 Rmu_sc0006452.1_g000008 Rmu_sc0010342.1_g000003 Rmu_sc0010342.1_g000008
rosa_roxburghii	Rroxscaffold_4G00307550 Rroxscaffold_4G00307580
rosa_rugosa	Rorug01G0188300 Rorug01G0188300
rosa_samantha	Rh1AG205700 Rh1AG206000 Rh1BG171300 Rh1BG171400 Rh1CG190800 Rh1DG201300 Rh1DG201400
rosa_wichuraiana	Rw0G001810 Rw1G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	3 cut(s)	377, 410, 486
AciI	CCGC	6 cut(s)	111, 377, 380, 486, 562, 565
AclWI	GGATC	1 cut(s)	386
AfaI	GTAC	3 cut(s)	5, 250, 374
AfiI	CCNNNNNNNGG	1 cut(s)	561
AgsI	TTSAA	3 cut(s)	53, 165, 478
AhdI	GACNNNNNGTC	1 cut(s)	607
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	3 cut(s)	242, 287, 470
AluI	AGCT	3 cut(s)	242, 287, 470
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	2 cut(s)	428, 615
Alw44I	GTGCAC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	386
Ama87I	CYCGRG	3 cut(s)	221, 422, 440
AoxI	GGCC	1 cut(s)	359
ApaLI	GTGCAC	1 cut(s)	314
ApeKI	GCWGC	2 cut(s)	158, 470
Asp700I	GAANNNNTTC	1 cut(s)	57
AspLEI	GCGC	4 cut(s)	214, 410, 486, 570
AvaI	CYCGRG	3 cut(s)	221, 422, 440
BaeGI	GKGCMC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	145, 457
BccI	CCATC	1 cut(s)	110
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciT130I	CCWGG	1 cut(s)	325
BcoDI	GTCTC	2 cut(s)	428, 615
BfaI	CTAG	2 cut(s)	20, 74
BfoI	RGCGCY	2 cut(s)	215, 571
BfuAI	ACCTGC	1 cut(s)	176
BisI	GCNGC	7 cut(s)	112, 159, 378, 471, 487, 563, 566
BlsI	GCNGC	7 cut(s)	113, 160, 379, 472, 488, 564, 567
Bme1390I	CCNGG	1 cut(s)	325
BmeRI	GACNNNNNGTC	1 cut(s)	607
BmeT110I	CYCGRG	3 cut(s)	221, 422, 440
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	602
BoxI	GACNNNNGTC	1 cut(s)	450
BplI	GAGNNNNNCTC	2 cut(s)	405, 437
BpmI	CTGGAG	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	193
BsaJI	CCNNGG	7 cut(s)	189, 222, 323, 324, 362, 441, 615
BsaWI	WCCGGW	1 cut(s)	253
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 257, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse118I	RCCGGY	1 cut(s)	541
Bse1I	ACTGG	2 cut(s)	147, 203
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	7 cut(s)	189, 222, 323, 324, 362, 441, 615
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	2 cut(s)	147, 203
BseRI	GAGGAG	5 cut(s)	272, 275, 278, 367, 370
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	2 cut(s)	145, 457
Bsh1236I	CGCG	3 cut(s)	377, 410, 486
Bsh1285I	CGRYCG	1 cut(s)	466
BshFI	GGCC	1 cut(s)	361
BsiEI	CGRYCG	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	318
BsiHKCI	CYCGRG	3 cut(s)	221, 422, 440
BsiSI	CCGG	5 cut(s)	95, 254, 395, 542, 575
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	2 cut(s)	428, 615
BsmFI	GGGAC	1 cut(s)	439
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	361
BsoBI	CYCGRG	3 cut(s)	221, 422, 440
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	79, 391
BspACI	CCGC	6 cut(s)	111, 377, 380, 486, 562, 565
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	3 cut(s)	377, 410, 486
BspLI	GGNNCC	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	386
BspQI	GCTCTTC	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	541
BsrI	ACTGG	2 cut(s)	147, 203
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	7 cut(s)	189, 222, 323, 324, 362, 441, 615
BssMI	GATC	2 cut(s)	79, 391
BssT1I	CCWWGG	2 cut(s)	362, 615
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	582
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	3 cut(s)	285, 318, 572
BstDEI	CTNAG	1 cut(s)	288
BstDSI	CCRYGG	1 cut(s)	189
BstEII	GGTNACC	1 cut(s)	550
BstF5I	GGATG	1 cut(s)	129
BstFNI	CGCG	3 cut(s)	377, 410, 486
BstH2I	RGCGCY	2 cut(s)	215, 571
BstHHI	GCGC	4 cut(s)	214, 410, 486, 570
BstKTI	GATC	2 cut(s)	82, 394
BstMAI	GTCTC	2 cut(s)	428, 615
BstMBI	GATC	2 cut(s)	79, 391
BstMCI	CGRYCG	1 cut(s)	466
BstMWI	GCNNNNNNNGC	4 cut(s)	293, 455, 531, 571
BstNI	CCWGG	1 cut(s)	325
BstPAI	GACNNNNGTC	1 cut(s)	450
BstPI	GGTNACC	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	323
BstSLI	GKGCMC	1 cut(s)	318
BstUI	CGCG	3 cut(s)	377, 410, 486
BstV1I	GCAGC	2 cut(s)	145, 457
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	176
Cac8I	GCNNGC	3 cut(s)	285, 318, 572
CfoI	GCGC	4 cut(s)	214, 410, 486, 570
Cfr10I	RCCGGY	1 cut(s)	541
CseI	GACGC	2 cut(s)	285, 455
Csp6I	GTAC	3 cut(s)	4, 249, 373
CviQI	GTAC	3 cut(s)	4, 249, 373
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	2 cut(s)	81, 393
DpnII	GATC	2 cut(s)	79, 391
DriI	GACNNNNNGTC	1 cut(s)	607
Eam1104I	CTCTTC	1 cut(s)	51
Eam1105I	GACNNNNNGTC	1 cut(s)	607
EarI	CTCTTC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	395
Eco130I	CCWWGG	2 cut(s)	362, 615
Eco147I	AGGCCT	1 cut(s)	361
Eco88I	CYCGRG	3 cut(s)	221, 422, 440
Eco91I	GGTNACC	1 cut(s)	550
EcoO65I	GGTNACC	1 cut(s)	550
EcoRII	CCWGG	1 cut(s)	323
EcoT14I	CCWWGG	2 cut(s)	362, 615
ErhI	CCWWGG	2 cut(s)	362, 615
FaiI	YATR	2 cut(s)	84, 86
FaqI	GGGAC	1 cut(s)	439
FauNDI	CATATG	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	7 cut(s)	112, 159, 378, 471, 487, 563, 566
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	7 cut(s)	112, 159, 378, 471, 487, 563, 566
FspBI	CTAG	2 cut(s)	20, 74
GlaI	GCGC	4 cut(s)	213, 409, 485, 569
GluI	GCNGC	7 cut(s)	112, 159, 378, 471, 487, 563, 566
GsuI	CTGGAG	1 cut(s)	130
HaeII	RGCGCY	2 cut(s)	215, 571
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	5 cut(s)	95, 254, 395, 542, 575
HgaI	GACGC	2 cut(s)	285, 455
HhaI	GCGC	4 cut(s)	214, 410, 486, 570
Hin6I	GCGC	4 cut(s)	212, 408, 484, 568
HinP1I	GCGC	4 cut(s)	212, 408, 484, 568
HinfI	GANTC	8 cut(s)	23, 32, 53, 206, 227, 233, 436, 608
HpaII	CCGG	5 cut(s)	95, 254, 395, 542, 575
Hpy166II	GTNNAC	3 cut(s)	121, 251, 316
Hpy188I	TCNGA	5 cut(s)	37, 232, 238, 291, 598
Hpy188III	TCNNGA	3 cut(s)	50, 424, 440
Hpy8I	GTNNAC	3 cut(s)	121, 251, 316
Hpy99I	CGWCG	3 cut(s)	119, 301, 592
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	582
HpyCH4IV	ACGT	3 cut(s)	117, 272, 307
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	4 cut(s)	293, 455, 531, 571
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	3 cut(s)	117, 272, 307
HspAI	GCGC	4 cut(s)	212, 408, 484, 568
Kzo9I	GATC	2 cut(s)	79, 391
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	2 cut(s)	145, 457
LweI	GCATC	1 cut(s)	602
MaeI	CTAG	2 cut(s)	20, 74
MaeII	ACGT	3 cut(s)	117, 272, 307
MaeIII	GTNAC	2 cut(s)	268, 550
MalI	GATC	2 cut(s)	81, 393
MboI	GATC	2 cut(s)	79, 391
MboII	GAAGA	3 cut(s)	38, 97, 412
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	318
MlyI	GAGTC	4 cut(s)	32, 221, 430, 617
MmeI	TCCRAC	1 cut(s)	60
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	1 cut(s)	303
MspI	CCGG	5 cut(s)	95, 254, 395, 542, 575
MspR9I	CCNGG	1 cut(s)	325
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	3 cut(s)	377, 410, 486
MwoI	GCNNNNNNNGC	4 cut(s)	293, 455, 531, 571
NdeI	CATATG	1 cut(s)	84
NdeII	GATC	2 cut(s)	79, 391
NlaIV	GGNNCC	1 cut(s)	90
PasI	CCCWGGG	1 cut(s)	324
PceI	AGGCCT	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	3 cut(s)	114, 429, 438
PctI	GAATGC	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	4 cut(s)	32, 53, 206, 233
PkrI	GCNGC	7 cut(s)	113, 160, 379, 472, 488, 564, 567
PleI	GAGTC	4 cut(s)	31, 221, 430, 616
PpsI	GAGTC	4 cut(s)	31, 221, 430, 616
PshAI	GACNNNNGTC	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	323
PspEI	GGTNACC	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	3 cut(s)	5, 250, 374
RsaNI	GTAC	3 cut(s)	4, 249, 373
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	7 cut(s)	112, 159, 378, 471, 487, 563, 566
Sau3AI	GATC	2 cut(s)	79, 391
SchI	GAGTC	4 cut(s)	32, 221, 430, 617
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	9 cut(s)	72, 120, 170, 244, 270, 275, 289, 310, 472
SfaNI	GCATC	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	6 cut(s)	111, 377, 380, 486, 562, 565
SspMI	CTAG	2 cut(s)	20, 74
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	323
StyI	CCWWGG	2 cut(s)	362, 615
TaaI	ACNGT	1 cut(s)	582
TaiI	ACGT	3 cut(s)	120, 275, 310
TaqI	TCGA	2 cut(s)	61, 527
TaqII	GACCGA	1 cut(s)	480
TatI	WGTACW	1 cut(s)	248
TauI	GCSGC	5 cut(s)	114, 380, 489, 565, 568
TfiI	GAWTC	4 cut(s)	32, 53, 206, 233
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseI	GCWGC	2 cut(s)	158, 470
TspGWI	ACGGA	2 cut(s)	21, 206
VneI	GTGCAC	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	2 cut(s)	20, 74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.