Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001581

Physical Location & Seq

Genomic Coordinates Forward (+)

18831130 .. 18832673

Gene Structure 1544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGTCCTTCAAAACGATATTGATCTGCTTAACCCTCCTGCTGAGCTCGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTTCAATCACCCAATTCGTTTTTCATGGATGTCAAGTGTCAAGGCTGCTTTAACATTACGACTGTGTTCAGCCACTCTCAGACCGTTGTGATGTGTGGAAACTGCCAGACTTTGCTCTGCACACCCACAGGAGGGAAGGCAAAGCTCACTGAAGGATGCTCTTTCAGGAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000075 GO:0000077 GO:0000184 GO:0000278 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0000956 GO:0002181 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006417 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006915 GO:0006919 GO:0006950 GO:0006974 GO:0006978 GO:0006996 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0008494 GO:0008630 GO:0008656 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010941 GO:0010942 GO:0010948 GO:0010950 GO:0010952 GO:0012501 GO:0015031 GO:0015833 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016504 GO:0016505 GO:0019222 GO:0019439 GO:0019538 GO:0022402 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0023052 GO:0030054 GO:0030162 GO:0030234 GO:0030312 GO:0030330 GO:0030490 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0031571 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0035556 GO:0042254 GO:0042255 GO:0042274 GO:0042770 GO:0042771 GO:0042772 GO:0042788 GO:0042886 GO:0042981 GO:0043028 GO:0043043 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043280 GO:0043281 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045047 GO:0045182 GO:0045184 GO:0045727 GO:0045786 GO:0045862 GO:0045930 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0052547 GO:0052548 GO:0055044 GO:0060255 GO:0061134 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070727 GO:0070925 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0071944 GO:0072331 GO:0072332 GO:0072594 GO:0072599 GO:0072657 GO:0080090 GO:0090079 GO:0090150 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097190 GO:0097193 GO:0098772 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902806 GO:1902807 GO:1903047 GO:1990904 GO:2000045 GO:2000112 GO:2000116 GO:2000134 GO:2001056

KEGG Pathways

Metabolic & Signaling

ko03010 ko04010 ko04014 ko05203 map03010 map04010 map04014 map05203

Pfam Domains

Protein Families

Ribosomal_S27e

Protein Analysis

84

Amino Acids

9.4

Weight (kDa)

9.22

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S27e	PF01667	30 - 84	6.2e-27	Ribosomal protein S27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45710 AT3G61110 AT3G61111 AT5G47930
fragaria_vesca	FvH4_4g22340 FvH4_4g22990
malus_domestica	MD00G1067000.v1.1 MD13G1127700.v1.1 MD13G1132700.v1.1 MD16G1127800.v1.1 MD16G1143000.v1.1
prunus_persica	Prupe.1G212900_v2.0.a1 Prupe.1G218300_v2.0.a1
pyrus_communis	pycom13g11060 pycom13g11520
rosa_chinensis	RchiOBHm_Chr3g0487351 RchiOBHm_Chr4g0428571 RchiOBHm_Chr4g0429251
rosa_laevigata	RLG00000023012
rosa_multiflora	Rmu_co8070416.1_g000001 Rmu_sc0000054.1_g000026 Rmu_sc0001955.1_g000013 Rmu_sc0033684.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370280 Rroxscaffold_5G00370880 Rroxscaffold_6G00394860
rosa_rugosa	Rorug02G0097800 Rorug03G0233400 Rorug03G0255700 Rorug04G0226500 Rorug04G0234500
rosa_samantha	Rh3BG316900 Rh3CG314900 Rh3DG312800 Rh4AG284000 Rh4BG289700 Rh4CG165800 Rh4CG311600 Rh4DG119200 Rh4DG286700 Rh6CG187400 Rh7AG391000 Rh7BG331200 Rh7CG410000
rosa_wichuraiana	Rw2G037400 Rw3G024910 Rw4G024650 Rw4G025130 Rw5G025190 Rw7G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	209, 210
AgsI	TTSAA	2 cut(s)	11, 83
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	3 cut(s)	46, 67, 223
AluI	AGCT	3 cut(s)	46, 67, 223
Alw21I	GWGCWC	1 cut(s)	48
Ama87I	CYCGRG	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	78
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	110
BisI	GCNGC	1 cut(s)	124
BlpI	GCTNAGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 210
Bse8I	GATNNNNATC	1 cut(s)	21
BseGI	GGATG	2 cut(s)	112, 239
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	2 cut(s)	209, 210
BseMII	CTCAG	2 cut(s)	33, 170
BseXI	GCAGC	1 cut(s)	110
BsgI	GTGCAG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	209, 210
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	22
Bsp1720I	GCTNAGC	1 cut(s)	42
BspCNI	CTCAG	2 cut(s)	34, 169
BssMI	GATC	1 cut(s)	22
Bst4CI	ACNGT	2 cut(s)	142, 163
Bst6I	CTCTTC	1 cut(s)	47
BstDEI	CTNAG	2 cut(s)	42, 156
BstF5I	GGATG	2 cut(s)	112, 239
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	110
BtsCI	GGATG	2 cut(s)	112, 239
BtsIMutI	CAGTG	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	62
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	5 cut(s)	46, 67, 123, 150, 223
CviKI_1	RGCY	5 cut(s)	46, 67, 123, 150, 223
DdeI	CTNAG	2 cut(s)	42, 156
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	48
FaeI	CATG	1 cut(s)	106
FaiI	YATR	1 cut(s)	104
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	124
FokI	GGATG	2 cut(s)	119, 246
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	124
GluI	GCNGC	1 cut(s)	124
HgaI	GACGC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	106
HphI	GGTGA	1 cut(s)	78
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	2 cut(s)	49, 244
HpyAV	CCTTC	3 cut(s)	17, 208, 224
HpyCH4III	ACNGT	2 cut(s)	142, 163
HpyCH4V	TGCA	1 cut(s)	198
HpyF3I	CTNAG	2 cut(s)	42, 156
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	22
LpnPI	CCDG	4 cut(s)	51, 192, 197, 229
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	224
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	91
MnlI	CCTC	3 cut(s)	45, 48, 203
MseI	TTAA	2 cut(s)	30, 129
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	125
Psp124BI	GAGCTC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	30, 129
SatI	GCNGC	1 cut(s)	124
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	3 cut(s)	48, 69, 225
SfaNI	GCATC	1 cut(s)	224
Sfr274I	CTCGAG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	47
SmlI	CTYRAG	2 cut(s)	47, 68
SmoI	CTYRAG	2 cut(s)	47, 68
Sse9I	AATT	1 cut(s)	91
SstI	GAGCTC	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	142, 163
TaqI	TCGA	1 cut(s)	48
TasI	AATT	1 cut(s)	91
Tru1I	TTAA	2 cut(s)	30, 129
Tru9I	TTAA	2 cut(s)	30, 129
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	1 cut(s)	123
TspDTI	ATGAA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	4
XhoI	CTCGAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.