Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001581

Physical Location & Seq

Genomic Coordinates Forward (+)

24319295 .. 24321326

Gene Structure 2032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0255700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGTTCCAAACAATCAGCAAAGTGATACGATGTCTGATGGAGAGATTGATGATTATTTTAGATCTTTTCCACCAGGTTATCAATTTGTCCCCACTGATGCAGAGTTGATTATATATTATTTGAAGAGAAAGATCTTGAATCAACAACTACCCGTGAACCGGATTCGTGATGAGAATATTTATCACTACCATCCTCAAACTCTTGCTGAAATGTATCCGAGAATTAGAGAAATTGAATGGTACTTTTTCTCTTCTAGAGACCGAAGGTACCCCAATGGATCTCGGCCTAATCGATCAGCAAAAGGTGGCTACTGGAAGGCAACGAAAAGAGATGAGATCATCACAGCTCAAGGTGGTGAAGAAATTGGATTCAAAATGCATCTGGAATTTTATGAAGGAACACATGCACAAGGTAGAAAGACAAACTGGAAAATGCATGAATATAGGATCAAAGAAGAGAATGATATTGGTCCTCCTCAAAATACCAACAAGGGTGAAGGTATCAGCATGAGGTTGGATGATTTGGTTTTGTGTAAGATTTACATAAAGAAGAATTTCAAGGCTGATACAGACAGCAACAGTTCAAAGACATCAGACAATTCTGATCAAGTAGTACTCCCAGTAACAAATGTTACAACATCTAGTGATTGTCAAAATAAATTAGCTATTCAGCATGAAGTTCAAGATCAATCTCTCAATGCCTCACAGTTCGACCACAATGGCTTCTCAACTTTAACGAACTATCGTGATGTAGAATCCAGCAGCAGCAACTTCTGGAATCAAAACTACACAGATGATTACGACACGTACTTGATGCAGATGAGTCGAGATCCATCATCGTCACGATTCTTTTCTTCTCCGTTTCCCTTGCAATCTTCAACAGACCAGATTTGCGCAGGATTGGAGCCTGTAGATGATAAGATATCAGAGATCGATCCAAGTTCTATGTTACGGTTGATACCTGCGCATGTCAGAGAATGTGATGAGAATATGTCAGAGAATAAGAATCAAAACTATACAGATGATTACGACACGTACTTGATGCAAATGAGTCGAGATCCATCGTCGTCACGATTATTTTCTTCTCCGTTTCCCTTGCAATCTTCAACAGACCAGATTTGCGCAGGATTGGAGCCTGTAGATGATAAGATATCAGAGGTCGATCCAAGTTCTATTGTGTTACCTGCGCATGTCAGAGAATATGATAATCGTGCATGTAAAGCCGAGCCTATTCAGCCTGTTAGGGATGAAGGTGATGATCATGTGTCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27e

Protein Analysis

424

Amino Acids

48.86

Weight (kDa)

4.91

Isoelectric Point (pI)

60.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	24 - 150	7.9e-39	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45710 AT3G61110 AT3G61111 AT5G47930
fragaria_vesca	FvH4_4g22340 FvH4_4g22990
malus_domestica	MD00G1067000.v1.1 MD13G1127700.v1.1 MD13G1132700.v1.1 MD16G1127800.v1.1 MD16G1143000.v1.1
prunus_persica	Prupe.1G212900_v2.0.a1 Prupe.1G218300_v2.0.a1
pyrus_communis	pycom13g11060 pycom13g11520
rosa_chinensis	RchiOBHm_Chr3g0487351 RchiOBHm_Chr4g0428571 RchiOBHm_Chr4g0429251
rosa_laevigata	RLG00000023012
rosa_multiflora	Rmu_co8070416.1_g000001 Rmu_sc0000054.1_g000026 Rmu_sc0001955.1_g000013 Rmu_sc0033684.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370280 Rroxscaffold_5G00370880 Rroxscaffold_6G00394860
rosa_rugosa	Rorug02G0097800 Rorug03G0233400 Rorug03G0255700 Rorug04G0226500 Rorug04G0234500
rosa_samantha	Rh3BG316900 Rh3CG314900 Rh3DG312800 Rh4AG284000 Rh4BG289700 Rh4CG165800 Rh4CG311600 Rh4DG119200 Rh4DG286700 Rh6CG187400 Rh7AG391000 Rh7BG331200 Rh7CG410000
rosa_wichuraiana	Rw2G037400 Rw3G024910 Rw4G024650 Rw4G025130 Rw5G025190 Rw7G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	4 cut(s)	895, 966, 1123, 1188
Acc36I	ACCTGC	2 cut(s)	970, 1192
Acc65I	GGTACC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	267
AclWI	GGATC	6 cut(s)	286, 455, 824, 929, 1052, 1157
AcsI	RAATTY	2 cut(s)	386, 553
AfaI	GTAC	5 cut(s)	242, 269, 615, 809, 1037
AfiI	CCNNNNNNNGG	1 cut(s)	159
AflIII	ACRYGT	2 cut(s)	804, 1032
AgsI	TTSAA	9 cut(s)	124, 139, 236, 373, 559, 585, 683, 879, 1107
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	2 cut(s)	347, 665
AluI	AGCT	2 cut(s)	347, 665
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	6 cut(s)	286, 455, 824, 929, 1052, 1157
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	2 cut(s)	762, 765
ApoI	RAATTY	2 cut(s)	386, 553
Asp700I	GAANNNNTTC	1 cut(s)	554
Asp718I	GGTACC	1 cut(s)	267
AspLEI	GCGC	4 cut(s)	896, 967, 1124, 1189
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	3 cut(s)	368, 506, 1265
AvaII	GGWCC	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	774, 777
BccI	CCATC	4 cut(s)	32, 198, 841, 1069
BcgI	CGANNNNNNTGC	4 cut(s)	806, 840, 1034, 1068
BciT130I	CCWGG	1 cut(s)	75
BciVI	GTATCC	1 cut(s)	225
BclI	TGATCA	2 cut(s)	604, 1258
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	2 cut(s)	255, 642
BfmI	CTRYAG	2 cut(s)	909, 1137
BfuAI	ACCTGC	2 cut(s)	970, 1192
BfuI	GTATCC	1 cut(s)	225
BglII	AGATCT	2 cut(s)	62, 132
BisI	GCNGC	2 cut(s)	763, 766
BlsI	GCNGC	2 cut(s)	764, 767
BmcAI	AGTACT	1 cut(s)	615
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	4 cut(s)	6, 269, 906, 1134
BmrFI	CCNGG	1 cut(s)	75
BmrI	ACTGGG	1 cut(s)	614
BmsI	GCATC	4 cut(s)	88, 388, 804, 1032
BmuI	ACTGGG	1 cut(s)	614
BpuEI	CTTGAG	1 cut(s)	333
Bsa29I	ATCGAT	2 cut(s)	292, 933
BsaAI	YACGTR	2 cut(s)	807, 1035
BsaI	GGTCTC	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	3 cut(s)	317, 431, 620
BseBI	CCWGG	1 cut(s)	75
BseCI	ATCGAT	2 cut(s)	292, 933
BseGI	GGATG	3 cut(s)	190, 523, 1252
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseNI	ACTGG	3 cut(s)	317, 431, 620
BseRI	GAGGAG	1 cut(s)	465
BseXI	GCAGC	2 cut(s)	774, 777
BshFI	GGCC	1 cut(s)	286
BshNI	GGYRCC	1 cut(s)	267
BshVI	ATCGAT	2 cut(s)	292, 933
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	286
Bso31I	GGTCTC	1 cut(s)	252
BspANI	GGCC	1 cut(s)	286
BspDI	ATCGAT	2 cut(s)	292, 933
BspLI	GGNNCC	4 cut(s)	6, 269, 906, 1134
BspMI	ACCTGC	2 cut(s)	970, 1192
BspPI	GGATC	6 cut(s)	286, 455, 824, 929, 1052, 1157
BspT107I	GGYRCC	1 cut(s)	267
BspTNI	GGTCTC	1 cut(s)	252
BsrI	ACTGG	3 cut(s)	317, 431, 620
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	3 cut(s)	581, 708, 954
Bst6I	CTCTTC	3 cut(s)	119, 256, 450
BstBAI	YACGTR	2 cut(s)	807, 1035
BstF5I	GGATG	3 cut(s)	190, 523, 1252
BstHHI	GCGC	4 cut(s)	896, 967, 1124, 1189
BstMAI	GTCTC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	2 cut(s)	1220, 1234
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	4 cut(s)	407, 971, 1193, 1218
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	2 cut(s)	909, 1137
BstV1I	GCAGC	2 cut(s)	774, 777
BstX2I	RGATCY	5 cut(s)	62, 132, 278, 829, 1057
BstYI	RGATCY	5 cut(s)	62, 132, 278, 829, 1057
Bsu15I	ATCGAT	2 cut(s)	292, 933
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	286
BsuTUI	ATCGAT	2 cut(s)	292, 933
BtsCI	GGATG	3 cut(s)	190, 523, 1252
BtsIMutI	CAGTG	1 cut(s)	93
BveI	ACCTGC	2 cut(s)	970, 1192
CfoI	GCGC	4 cut(s)	896, 967, 1124, 1189
Cfr13I	GGNCC	1 cut(s)	470
ClaI	ATCGAT	2 cut(s)	292, 933
CsiI	ACCWGGT	1 cut(s)	73
Csp6I	GTAC	5 cut(s)	241, 268, 614, 808, 1036
CviAII	CATG	8 cut(s)	404, 437, 508, 674, 968, 1190, 1215, 1262
CviQI	GTAC	5 cut(s)	241, 268, 614, 808, 1036
Eam1104I	CTCTTC	3 cut(s)	119, 256, 450
EarI	CTCTTC	3 cut(s)	119, 256, 450
Eco31I	GGTCTC	1 cut(s)	252
Eco32I	GATATC	2 cut(s)	924, 1152
Eco47I	GGWCC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	73
EcoRV	GATATC	2 cut(s)	924, 1152
EcoT22I	ATGCAT	2 cut(s)	381, 438
FaeI	CATG	8 cut(s)	407, 440, 511, 677, 971, 1193, 1218, 1265
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	8 cut(s)	403, 436, 507, 673, 967, 1189, 1214, 1261
FbaI	TGATCA	2 cut(s)	604, 1258
Fnu4HI	GCNGC	2 cut(s)	763, 766
FokI	GGATG	3 cut(s)	177, 530, 1259
Fsp4HI	GCNGC	2 cut(s)	763, 766
FspBI	CTAG	2 cut(s)	255, 642
FspI	TGCGCA	4 cut(s)	895, 966, 1123, 1188
GlaI	GCGC	4 cut(s)	895, 966, 1123, 1188
GluI	GCNGC	2 cut(s)	763, 766
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	1 cut(s)	160
HhaI	GCGC	4 cut(s)	896, 967, 1124, 1189
Hin1II	CATG	8 cut(s)	407, 440, 511, 677, 971, 1193, 1218, 1265
Hin6I	GCGC	4 cut(s)	894, 965, 1122, 1187
HinP1I	GCGC	4 cut(s)	894, 965, 1122, 1187
HinfI	GANTC	9 cut(s)	139, 163, 369, 755, 778, 823, 846, 1006, 1051
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	3 cut(s)	368, 506, 1265
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	9 cut(s)	37, 219, 595, 604, 928, 974, 997, 1156, 1196
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	1069
HpyAV	CCTTC	5 cut(s)	258, 310, 389, 491, 1244
HpyCH4III	ACNGT	3 cut(s)	581, 708, 954
HpyCH4IV	ACGT	2 cut(s)	806, 1034
HpyCH4V	TGCA	9 cut(s)	101, 379, 407, 436, 817, 871, 1045, 1099, 1214
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1220, 1234
HpySE526I	ACGT	2 cut(s)	806, 1034
Hsp92II	CATG	8 cut(s)	407, 440, 511, 677, 971, 1193, 1218, 1265
HspAI	GCGC	4 cut(s)	894, 965, 1122, 1187
KpnI	GGTACC	1 cut(s)	271
Ksp22I	TGATCA	2 cut(s)	604, 1258
LmnI	GCTCC	2 cut(s)	904, 1132
Lsp1109I	GCAGC	2 cut(s)	774, 777
LweI	GCATC	4 cut(s)	88, 388, 804, 1032
MabI	ACCWGGT	1 cut(s)	73
MaeI	CTAG	2 cut(s)	255, 642
MaeII	ACGT	2 cut(s)	806, 1034
MaeIII	GTNAC	6 cut(s)	622, 631, 840, 948, 1068, 1179
MboII	GAAGA	9 cut(s)	136, 243, 371, 467, 562, 846, 867, 1074, 1095
MflI	RGATCY	5 cut(s)	62, 132, 278, 829, 1057
MluCI	AATT	8 cut(s)	83, 222, 231, 363, 386, 553, 598, 659
MlyI	GAGTC	2 cut(s)	832, 1060
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	6 cut(s)	204, 483, 486, 504, 712, 1150
Mph1103I	ATGCAT	2 cut(s)	381, 438
MroXI	GAANNNNTTC	1 cut(s)	554
MseI	TTAA	1 cut(s)	734
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	1220, 1234
NlaIII	CATG	8 cut(s)	407, 440, 511, 677, 971, 1193, 1218, 1265
NlaIV	GGNNCC	4 cut(s)	6, 269, 906, 1134
NmeAIII	GCCGAG	2 cut(s)	262, 1249
NmuCI	GTSAC	2 cut(s)	840, 1068
NsbI	TGCGCA	4 cut(s)	895, 966, 1123, 1188
NsiI	ATGCAT	2 cut(s)	381, 438
NspI	RCATGY	4 cut(s)	407, 971, 1193, 1218
PcsI	WCGNNNNNNNCGW	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	7 cut(s)	139, 163, 369, 755, 778, 846, 1006
PkrI	GCNGC	2 cut(s)	764, 767
PleI	GAGTC	2 cut(s)	831, 1059
PpsI	GAGTC	2 cut(s)	831, 1059
Ppu21I	YACGTR	2 cut(s)	807, 1035
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	4 cut(s)	6, 269, 906, 1134
PspPI	GGNCC	1 cut(s)	470
PsuI	RGATCY	5 cut(s)	62, 132, 278, 829, 1057
RsaI	GTAC	5 cut(s)	242, 269, 615, 809, 1037
RsaNI	GTAC	5 cut(s)	241, 268, 614, 808, 1036
SaqAI	TTAA	1 cut(s)	734
SatI	GCNGC	2 cut(s)	763, 766
Sau96I	GGNCC	1 cut(s)	470
ScaI	AGTACT	1 cut(s)	615
SchI	GAGTC	2 cut(s)	832, 1060
ScrFI	CCNGG	1 cut(s)	75
SexAI	ACCWGGT	1 cut(s)	73
SfaNI	GCATC	4 cut(s)	88, 388, 804, 1032
SfcI	CTRYAG	2 cut(s)	909, 1137
SinI	GGWCC	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
Sse9I	AATT	8 cut(s)	83, 222, 231, 363, 386, 553, 598, 659
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	2 cut(s)	255, 642
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	3 cut(s)	581, 708, 954
TaiI	ACGT	2 cut(s)	809, 1037
TaqI	TCGA	6 cut(s)	292, 711, 826, 933, 1054, 1161
TaqII	GACCGA	1 cut(s)	276
TasI	AATT	8 cut(s)	83, 222, 231, 363, 386, 553, 598, 659
TatI	WGTACW	1 cut(s)	613
TfiI	GAWTC	7 cut(s)	139, 163, 369, 755, 778, 846, 1006
Tru1I	TTAA	1 cut(s)	734
Tru9I	TTAA	1 cut(s)	734
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	2 cut(s)	840, 1068
TseI	GCWGC	2 cut(s)	762, 765
Tsp45I	GTSAC	2 cut(s)	840, 1068
TspDTI	ATGAA	4 cut(s)	408, 453, 690, 1263
TspGWI	ACGGA	2 cut(s)	849, 1077
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	470
XapI	RAATTY	2 cut(s)	386, 553
XbaI	TCTAGA	1 cut(s)	254
XceI	RCATGY	4 cut(s)	407, 971, 1193, 1218
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	2 cut(s)	255, 642
ZrmI	AGTACT	1 cut(s)	615
Zsp2I	ATGCAT	2 cut(s)	381, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.