Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001581

Physical Location & Seq

Genomic Coordinates Forward (+)

18895839 .. 18896099

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG119200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGTTCTTCAAAATGATATCGATTTGCTTCATCCACCAGCTGATCTGGAGAAGAGGAAGCACAAGCTCAAGCGGCTTGTGCAGACCCCAAATTCTTTCTTCATGGATGTCAAATGCCAAGGATGTTTCAATATAACTACTGTGTTCAGTCACTCGCAAACCGTTGTGGTGTGTGGGAACTGCCAGACAGTGTTGTGCCAGCCTACTGGTGGGCGTGCCAGCCTCACTGAGGGTTGTTCCTTCAGGAGGAAAGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27e

Protein Analysis

86

Amino Acids

9.6

Weight (kDa)

8.88

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S27e	PF01667	30 - 84	1.8e-26	Ribosomal protein S27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45710 AT3G61110 AT3G61111 AT5G47930
fragaria_vesca	FvH4_4g22340 FvH4_4g22990
malus_domestica	MD00G1067000.v1.1 MD13G1127700.v1.1 MD13G1132700.v1.1 MD16G1127800.v1.1 MD16G1143000.v1.1
prunus_persica	Prupe.1G212900_v2.0.a1 Prupe.1G218300_v2.0.a1
pyrus_communis	pycom13g11060 pycom13g11520
rosa_chinensis	RchiOBHm_Chr3g0487351 RchiOBHm_Chr4g0428571 RchiOBHm_Chr4g0429251
rosa_laevigata	RLG00000023012
rosa_multiflora	Rmu_co8070416.1_g000001 Rmu_sc0000054.1_g000026 Rmu_sc0001955.1_g000013 Rmu_sc0033684.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370280 Rroxscaffold_5G00370880 Rroxscaffold_6G00394860
rosa_rugosa	Rorug02G0097800 Rorug03G0233400 Rorug03G0255700 Rorug04G0226500 Rorug04G0234500
rosa_samantha	Rh3BG316900 Rh3CG314900 Rh3DG312800 Rh4AG284000 Rh4BG289700 Rh4CG165800 Rh4CG311600 Rh4DG119200 Rh4DG286700 Rh6CG187400 Rh7AG391000 Rh7BG331200 Rh7CG410000
rosa_wichuraiana	Rw2G037400 Rw3G024910 Rw4G024650 Rw4G025130 Rw5G025190 Rw7G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	226
AfiI	CCNNNNNNNGG	3 cut(s)	209, 229, 246
AgsI	TTSAA	2 cut(s)	11, 130
AluBI	AGCT	2 cut(s)	41, 67
AluI	AGCT	2 cut(s)	41, 67
ApoI	RAATTY	1 cut(s)	91
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 229, 246
Bse1I	ACTGG	1 cut(s)	211
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	3 cut(s)	31, 112, 128
BseLI	CCNNNNNNNGG	3 cut(s)	209, 229, 246
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	101
BshVI	ATCGAT	1 cut(s)	21
BslI	CCNNNNNNNGG	3 cut(s)	209, 229, 246
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	1 cut(s)	73
BspCNI	CTCAG	1 cut(s)	220
BspDI	ATCGAT	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	118
Bst4CI	ACNGT	3 cut(s)	142, 163, 190
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	3 cut(s)	200, 216, 220
BstDEI	CTNAG	1 cut(s)	228
BstENI	CCTNNNNNAGG	2 cut(s)	227, 244
BstF5I	GGATG	3 cut(s)	31, 112, 128
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 79
BstXI	CCANNNNNNTGG	1 cut(s)	206
Bsu15I	ATCGAT	1 cut(s)	21
BsuTUI	ATCGAT	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	31, 112, 128
BtsIMutI	CAGTG	2 cut(s)	195, 225
Cac8I	GCNNGC	3 cut(s)	200, 216, 220
ClaI	ATCGAT	1 cut(s)	21
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	5 cut(s)	41, 67, 76, 202, 222
CviKI_1	RGCY	5 cut(s)	41, 67, 76, 202, 222
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	226
EcoNI	CCTNNNNNAGG	2 cut(s)	227, 244
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	1 cut(s)	106
FaiI	YATR	2 cut(s)	104, 134
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	3 cut(s)	18, 119, 135
Fsp4HI	GCNGC	1 cut(s)	74
GluI	GCNGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	68
Hin1II	CATG	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	47, 244
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	3 cut(s)	142, 163, 190
HpyCH4V	TGCA	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 79
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	7 cut(s)	32, 51, 192, 197, 212, 229, 232
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	2 cut(s)	64, 91
MluCI	AATT	1 cut(s)	91
MnlI	CCTC	4 cut(s)	48, 223, 233, 240
MspA1I	CMGCKG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	73, 79
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	41
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	1 cut(s)	43
SetI	ASST	2 cut(s)	43, 69
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	91
SsiI	CCGC	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	3 cut(s)	142, 163, 190
TaqI	TCGA	1 cut(s)	21
TasI	AATT	1 cut(s)	91
TauI	GCSGC	1 cut(s)	76
TscAI	CASTG	2 cut(s)	195, 232
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	20, 91
TspRI	CASTG	2 cut(s)	195, 232
XagI	CCTNNNNNAGG	2 cut(s)	227, 244
XapI	RAATTY	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.