Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001581

Physical Location & Seq

Genomic Coordinates Forward (+)

7946528 .. 7947384

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGTGCTTCAGAACGATATCGATTTGCTCCATCCACCAGCTGAGCTCGAGAAGAGGAAGCACAAGCTCAAGAGGCTCGTGCAGACCCCCAACTCTTTCTTTATGGATGTCAAGTGCCAGGGGTGCTTCAACATAACCACTGTGTTCAGTCACTCTCAAACAGTTGTGGTGTGCGGGAACTGCCAGACTGTGCTGTGCCAGCCTACTGGTGGTCGTGCCAGGCTCACTGAAGGTTGCTCTTTCAGGAGGAAGGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000075 GO:0000077 GO:0000184 GO:0000278 GO:0000462 GO:0000469 GO:0000478 GO:0000479 GO:0000956 GO:0002181 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006417 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006915 GO:0006919 GO:0006950 GO:0006974 GO:0006978 GO:0006996 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007346 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008283 GO:0008494 GO:0008630 GO:0008656 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010941 GO:0010942 GO:0010948 GO:0010950 GO:0010952 GO:0012501 GO:0015031 GO:0015833 GO:0015935 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016504 GO:0016505 GO:0019222 GO:0019439 GO:0019538 GO:0022402 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0023052 GO:0030162 GO:0030234 GO:0030330 GO:0030490 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031570 GO:0031571 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0035556 GO:0042254 GO:0042255 GO:0042274 GO:0042770 GO:0042771 GO:0042772 GO:0042886 GO:0042981 GO:0043028 GO:0043043 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043280 GO:0043281 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045047 GO:0045182 GO:0045184 GO:0045727 GO:0045786 GO:0045862 GO:0045930 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070727 GO:0070925 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0072331 GO:0072332 GO:0072594 GO:0072599 GO:0072657 GO:0080090 GO:0090079 GO:0090150 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097190 GO:0097193 GO:0098772 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902806 GO:1902807 GO:1903047 GO:1990904 GO:2000045 GO:2000112 GO:2000116 GO:2000134 GO:2001056

KEGG Pathways

Metabolic & Signaling

ko03010 ko04010 ko04014 ko05203 map03010 map04010 map04014 map05203

Pfam Domains

Protein Families

Ribosomal_S27e

Protein Analysis

87

Amino Acids

9.68

Weight (kDa)

9.1

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45710 AT3G61110 AT3G61111 AT5G47930
fragaria_vesca	FvH4_4g22340 FvH4_4g22990
malus_domestica	MD00G1067000.v1.1 MD13G1127700.v1.1 MD13G1132700.v1.1 MD16G1127800.v1.1 MD16G1143000.v1.1
prunus_persica	Prupe.1G212900_v2.0.a1 Prupe.1G218300_v2.0.a1
pyrus_communis	pycom13g11060 pycom13g11520
rosa_chinensis	RchiOBHm_Chr3g0487351 RchiOBHm_Chr4g0428571 RchiOBHm_Chr4g0429251
rosa_laevigata	RLG00000023012
rosa_multiflora	Rmu_co8070416.1_g000001 Rmu_sc0000054.1_g000026 Rmu_sc0001955.1_g000013 Rmu_sc0033684.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370280 Rroxscaffold_5G00370880 Rroxscaffold_6G00394860
rosa_rugosa	Rorug02G0097800 Rorug03G0233400 Rorug03G0255700 Rorug04G0226500 Rorug04G0234500
rosa_samantha	Rh3BG316900 Rh3CG314900 Rh3DG312800 Rh4AG284000 Rh4BG289700 Rh4CG165800 Rh4CG311600 Rh4DG119200 Rh4DG286700 Rh6CG187400 Rh7AG391000 Rh7BG331200 Rh7CG410000
rosa_wichuraiana	Rw2G037400 Rw3G024910 Rw4G024650 Rw4G025130 Rw5G025190 Rw7G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	174
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	130
AjnI	CCWGG	2 cut(s)	117, 218
AluBI	AGCT	3 cut(s)	41, 46, 67
AluI	AGCT	3 cut(s)	41, 46, 67
Alw21I	GWGCWC	1 cut(s)	48
Ama87I	CYCGRG	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	48
BauI	CACGAG	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	48
BccI	CCATC	1 cut(s)	39
BciT130I	CCWGG	2 cut(s)	119, 220
BlpI	GCTNAGC	1 cut(s)	42
Bme1390I	CCNGG	2 cut(s)	119, 220
BmeT110I	CYCGRG	1 cut(s)	47
BmrFI	CCNGG	2 cut(s)	119, 220
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	119, 220
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	31, 112
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	101
BshVI	ATCGAT	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp1720I	GCTNAGC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	34
BspDI	ATCGAT	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	118
BssSI	CACGAG	1 cut(s)	77
Bst2BI	CACGAG	1 cut(s)	77
Bst2UI	CCWGG	2 cut(s)	119, 220
Bst4CI	ACNGT	3 cut(s)	142, 163, 190
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	31, 112
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 123, 180, 199
BstNI	CCWGG	2 cut(s)	119, 220
BstSCI	CCNGG	2 cut(s)	117, 218
BstXI	CCANNNNNNTGG	1 cut(s)	206
Bsu15I	ATCGAT	1 cut(s)	21
BsuTUI	ATCGAT	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	31, 112
BtsIMutI	CAGTG	2 cut(s)	138, 225
Cac8I	GCNNGC	1 cut(s)	200
ClaI	ATCGAT	1 cut(s)	21
CviJI	RGCY	6 cut(s)	41, 46, 67, 76, 202, 223
CviKI_1	RGCY	6 cut(s)	41, 46, 67, 76, 202, 223
DdeI	CTNAG	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	46
EcoRII	CCWGG	2 cut(s)	117, 218
EcoRV	GATATC	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	48
FaiI	YATR	2 cut(s)	104, 134
FauI	CCCGC	1 cut(s)	167
FokI	GGATG	2 cut(s)	18, 119
FriOI	GRGCYC	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	3 cut(s)	49, 70, 244
HpyAV	CCTTC	2 cut(s)	224, 244
HpyCH4III	ACNGT	3 cut(s)	142, 163, 190
HpyCH4V	TGCA	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 123, 180, 199
HpyF3I	CTNAG	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	9 cut(s)	51, 104, 131, 192, 197, 205, 212, 229, 232
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	48
MnlI	CCTC	3 cut(s)	48, 66, 240
MspA1I	CMGCKG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	119, 220
MvaI	CCWGG	2 cut(s)	119, 220
MwoI	GCNNNNNNNGC	4 cut(s)	73, 123, 180, 199
NmuCI	GTSAC	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	2 cut(s)	117, 218
PspGI	CCWGG	2 cut(s)	117, 218
PvuII	CAGCTG	1 cut(s)	41
SacI	GAGCTC	1 cut(s)	48
ScrFI	CCNGG	2 cut(s)	119, 220
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	4 cut(s)	43, 48, 69, 235
Sfr274I	CTCGAG	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	47
SmlI	CTYRAG	2 cut(s)	47, 68
SmoI	CTYRAG	2 cut(s)	47, 68
SsiI	CCGC	1 cut(s)	174
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	2 cut(s)	117, 218
TaaI	ACNGT	3 cut(s)	142, 163, 190
TaqI	TCGA	2 cut(s)	21, 48
TscAI	CASTG	2 cut(s)	145, 232
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspRI	CASTG	2 cut(s)	145, 232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XhoI	CTCGAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.