Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001581

Physical Location & Seq

Genomic Coordinates Reverse (-)

34316772 .. 34317376

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG331200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGACGATTGTTTGGAGGTTCCAGTTGTGGTCGCCGTTTGCTTCTTCGACCTTCATTCATCAATCAAGATGGTTCTTCAGAATGATATCAATTTGCTTCATCCACCAGCTGATCTGGAGAAGAGGAAGCACAAGCTCAAGCGGCTTGTGCAGACCCCAAATTCTTTCTTCATGGATGTCAAATGCCAAGGATGTTTCAATATAACTACTATGTTCAGTCACTCGCAAACCGTTGTGGTGTGTGGGAACTGCCAGACAGTGTTGTGCCAGCCTACTGGTGGGCGTGCCAGGCTCACTGAGGGTTGTTCCTTCAGGAGGAAAGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27e

Protein Analysis

109

Amino Acids

12.25

Weight (kDa)

8.48

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S27e	PF01667	53 - 107	2.6e-26	Ribosomal protein S27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45710 AT3G61110 AT3G61111 AT5G47930
fragaria_vesca	FvH4_4g22340 FvH4_4g22990
malus_domestica	MD00G1067000.v1.1 MD13G1127700.v1.1 MD13G1132700.v1.1 MD16G1127800.v1.1 MD16G1143000.v1.1
prunus_persica	Prupe.1G212900_v2.0.a1 Prupe.1G218300_v2.0.a1
pyrus_communis	pycom13g11060 pycom13g11520
rosa_chinensis	RchiOBHm_Chr3g0487351 RchiOBHm_Chr4g0428571 RchiOBHm_Chr4g0429251
rosa_laevigata	RLG00000023012
rosa_multiflora	Rmu_co8070416.1_g000001 Rmu_sc0000054.1_g000026 Rmu_sc0001955.1_g000013 Rmu_sc0033684.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370280 Rroxscaffold_5G00370880 Rroxscaffold_6G00394860
rosa_rugosa	Rorug02G0097800 Rorug03G0233400 Rorug03G0255700 Rorug04G0226500 Rorug04G0234500
rosa_samantha	Rh3BG316900 Rh3CG314900 Rh3DG312800 Rh4AG284000 Rh4BG289700 Rh4CG165800 Rh4CG311600 Rh4DG119200 Rh4DG286700 Rh6CG187400 Rh7AG391000 Rh7BG331200 Rh7CG410000
rosa_wichuraiana	Rw2G037400 Rw3G024910 Rw4G024650 Rw4G025130 Rw5G025190 Rw7G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	2 cut(s)	62, 295
AfiI	CCNNNNNNNGG	2 cut(s)	278, 315
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	2 cut(s)	110, 136
AluI	AGCT	2 cut(s)	110, 136
ApoI	RAATTY	1 cut(s)	160
BccI	CCATC	1 cut(s)	64
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	289
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme1390I	CCNGG	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	289
BpmI	CTGGAG	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 315
Bse1I	ACTGG	2 cut(s)	23, 280
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	3 cut(s)	100, 181, 197
BseLI	CCNNNNNNNGG	2 cut(s)	278, 315
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	2 cut(s)	23, 280
BsgI	GTGCAG	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	278, 315
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	23, 280
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	232, 259
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	269, 285
BstDEI	CTNAG	1 cut(s)	297
BstENI	CCTNNNNNAGG	1 cut(s)	313
BstF5I	GGATG	3 cut(s)	100, 181, 197
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 148, 289
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	287
BstXI	CCANNNNNNTGG	1 cut(s)	275
BtsCI	GGATG	3 cut(s)	100, 181, 197
BtsIMutI	CAGTG	2 cut(s)	264, 294
Cac8I	GCNNGC	2 cut(s)	269, 285
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	5 cut(s)	110, 136, 145, 271, 292
CviKI_1	RGCY	5 cut(s)	110, 136, 145, 271, 292
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	187
Eco32I	GATATC	1 cut(s)	88
Eco57I	CTGAAG	2 cut(s)	62, 295
EcoNI	CCTNNNNNAGG	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	1 cut(s)	175
FaiI	YATR	3 cut(s)	173, 203, 212
FatI	CATG	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	3 cut(s)	87, 188, 204
Fsp4HI	GCNGC	1 cut(s)	143
GluI	GCNGC	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	137
Hin1II	CATG	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	3 cut(s)	67, 116, 313
HpyAV	CCTTC	2 cut(s)	62, 319
HpyCH4III	ACNGT	2 cut(s)	232, 259
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 148, 289
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	112
LpnPI	CCDG	9 cut(s)	36, 101, 120, 261, 266, 274, 281, 298, 301
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	4 cut(s)	37, 68, 133, 160
MluCI	AATT	2 cut(s)	91, 160
MnlI	CCTC	4 cut(s)	10, 117, 292, 309
MspA1I	CMGCKG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	3 cut(s)	142, 148, 289
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	21
PvuII	CAGCTG	1 cut(s)	110
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	289
SetI	ASST	4 cut(s)	21, 54, 112, 138
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	91, 160
SsiI	CCGC	1 cut(s)	142
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	232, 259
TaqI	TCGA	1 cut(s)	48
TasI	AATT	2 cut(s)	91, 160
TauI	GCSGC	1 cut(s)	145
TscAI	CASTG	2 cut(s)	264, 301
TseFI	GTSAC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	4 cut(s)	44, 48, 89, 160
TspRI	CASTG	2 cut(s)	264, 301
XagI	CCTNNNNNAGG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.