Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001581

Physical Location & Seq

Genomic Coordinates Reverse (-)

53595996 .. 53597385

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39744

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGTGCTCCAGAACGATATTGATTTGCTTCACCCACCAGCTGACCTCGAGAAGAGGAAGCACAAGCTCAAGAGGCTCGTGCAGACCCCTAATTCATTCTTCATGGACGTCAAATGCCAGGGATGCTTCAACATTACCACTGTGTTCAGCCACTCGCAAACAGTTGTGGTGTGCGGAAACTGCCAGACAGTTTTGTGCCAGCCAACTGGTGGGCGTGCCAGGCTCACTGAGGGGTGCTCTTTCAGGAGGAAGGGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27e

Protein Analysis

86

Amino Acids

9.67

Weight (kDa)

9.1

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S27e	PF01667	30 - 84	3.2e-27	Ribosomal protein S27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45710 AT3G61110 AT3G61111 AT5G47930
fragaria_vesca	FvH4_4g22340 FvH4_4g22990
malus_domestica	MD00G1067000.v1.1 MD13G1127700.v1.1 MD13G1132700.v1.1 MD16G1127800.v1.1 MD16G1143000.v1.1
prunus_persica	Prupe.1G212900_v2.0.a1 Prupe.1G218300_v2.0.a1
pyrus_communis	pycom13g11060 pycom13g11520
rosa_chinensis	RchiOBHm_Chr3g0487351 RchiOBHm_Chr4g0428571 RchiOBHm_Chr4g0429251
rosa_laevigata	RLG00000023012
rosa_multiflora	Rmu_co8070416.1_g000001 Rmu_sc0000054.1_g000026 Rmu_sc0001955.1_g000013 Rmu_sc0033684.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370280 Rroxscaffold_5G00370880 Rroxscaffold_6G00394860
rosa_rugosa	Rorug02G0097800 Rorug03G0233400 Rorug03G0255700 Rorug04G0226500 Rorug04G0234500
rosa_samantha	Rh3BG316900 Rh3CG314900 Rh3DG312800 Rh4AG284000 Rh4BG289700 Rh4CG165800 Rh4CG311600 Rh4DG119200 Rh4DG286700 Rh6CG187400 Rh7AG391000 Rh7BG331200 Rh7CG410000
rosa_wichuraiana	Rw2G037400 Rw3G024910 Rw4G024650 Rw4G025130 Rw5G025190 Rw7G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	111
AccB7I	CCANNNNNTGG	1 cut(s)	209
AciI	CCGC	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	130
AjnI	CCWGG	2 cut(s)	117, 218
AluBI	AGCT	2 cut(s)	41, 67
AluI	AGCT	2 cut(s)	41, 67
Alw21I	GWGCWC	2 cut(s)	9, 239
Alw26I	GTCTC	1 cut(s)	249
Ama87I	CYCGRG	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	47
BauI	CACGAG	1 cut(s)	77
Bbv12I	GWGCWC	2 cut(s)	9, 239
BciT130I	CCWGG	2 cut(s)	119, 220
BcoDI	GTCTC	1 cut(s)	249
Bme1390I	CCNGG	2 cut(s)	119, 220
BmeT110I	CYCGRG	1 cut(s)	47
BmrFI	CCNGG	2 cut(s)	119, 220
BmsI	GCATC	1 cut(s)	113
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpuEI	CTTGAG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	119, 220
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	101
BsiHKAI	GWGCWC	2 cut(s)	9, 239
BsiHKCI	CYCGRG	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	249
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	9, 239
BspACI	CCGC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	118
BssNI	GRCGYC	1 cut(s)	108
BssSI	CACGAG	1 cut(s)	77
Bst2BI	CACGAG	1 cut(s)	77
Bst2UI	CCWGG	2 cut(s)	119, 220
Bst4CI	ACNGT	3 cut(s)	142, 163, 190
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	200, 216
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	128
BstMAI	GTCTC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 123, 180, 220
BstNI	CCWGG	2 cut(s)	119, 220
BstSCI	CCNGG	2 cut(s)	117, 218
BstXI	CCANNNNNNTGG	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	128
BtsIMutI	CAGTG	2 cut(s)	138, 225
Cac8I	GCNNGC	2 cut(s)	200, 216
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	6 cut(s)	41, 67, 76, 150, 202, 223
CviKI_1	RGCY	6 cut(s)	41, 67, 76, 150, 202, 223
DdeI	CTNAG	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	47
EcoRII	CCWGG	2 cut(s)	117, 218
FaeI	CATG	1 cut(s)	106
FaiI	YATR	1 cut(s)	104
FatI	CATG	1 cut(s)	102
FokI	GGATG	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	106
HphI	GGTGA	1 cut(s)	23
Hpy188III	TCNNGA	4 cut(s)	10, 49, 70, 244
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	3 cut(s)	142, 163, 190
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 123, 180, 220
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	12
LweI	GCATC	1 cut(s)	113
MaeII	ACGT	1 cut(s)	108
MboII	GAAGA	2 cut(s)	64, 91
MhlI	GDGCHC	2 cut(s)	9, 239
MluCI	AATT	1 cut(s)	91
MnlI	CCTC	5 cut(s)	48, 56, 66, 223, 240
MspA1I	CMGCKG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	119, 220
MvaI	CCWGG	2 cut(s)	119, 220
MwoI	GCNNNNNNNGC	4 cut(s)	73, 123, 180, 220
NlaIII	CATG	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	47
PflMI	CCANNNNNTGG	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	117, 218
PspGI	CCWGG	2 cut(s)	117, 218
PvuII	CAGCTG	1 cut(s)	41
ScrFI	CCNGG	2 cut(s)	119, 220
SduI	GDGCHC	2 cut(s)	9, 239
SetI	ASST	4 cut(s)	43, 48, 69, 111
SfaNI	GCATC	1 cut(s)	113
Sfr274I	CTCGAG	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	47
SmlI	CTYRAG	2 cut(s)	47, 68
SmoI	CTYRAG	2 cut(s)	47, 68
Sse9I	AATT	1 cut(s)	91
SsiI	CCGC	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	117, 218
TaaI	ACNGT	3 cut(s)	142, 163, 190
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	48
TasI	AATT	1 cut(s)	91
TscAI	CASTG	2 cut(s)	145, 232
TspDTI	ATGAA	2 cut(s)	84, 91
TspRI	CASTG	2 cut(s)	145, 232
Van91I	CCANNNNNTGG	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XhoI	CTCGAG	1 cut(s)	47
ZraI	GACGTC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.