Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001581

Physical Location & Seq

Genomic Coordinates Forward (+)

38963050 .. 38963862

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0226500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGGCTCCCCCGATCAAATCGGTCCAGTGCTTCGGGCGCAAGAAGACTGCGGTGGCGGTCACCTACTGCAAGGAAGGCCGCGGCTTGATCAAGATCAACGGCTGCCCAATCGAGCTCGTGGAGCCGGAGATCCTCCGCTTCAAGGCCTACGAGCCCATCCTTCTGCTCGGACGACACCGTTTCGCCGGCGTCGACATGAGGATCCGCGTCAAGGGAGGAGGCCACACTTCTCAGATCTACGCCATCCGTCAGAGCATCGCCAAGGCCTTGGTCGCTTATTACCAGAAGTTTGTGGATGAGCAGAGCAAGAAGGAAATCAAGGACATTCTCGTCAGGTATGACCGTACTCTCCTCGTCGCCGATCCAAGGCGCTGCGAGCCCAAGAAGTTTGGTGGTCGTGGTGCCAGAGCTAGGTTCCAGAAGTCTTACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27e

Protein Analysis

145

Amino Acids

16.51

Weight (kDa)

10.16

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	13 - 145	4.3e-38	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45710 AT3G61110 AT3G61111 AT5G47930
fragaria_vesca	FvH4_4g22340 FvH4_4g22990
malus_domestica	MD00G1067000.v1.1 MD13G1127700.v1.1 MD13G1132700.v1.1 MD16G1127800.v1.1 MD16G1143000.v1.1
prunus_persica	Prupe.1G212900_v2.0.a1 Prupe.1G218300_v2.0.a1
pyrus_communis	pycom13g11060 pycom13g11520
rosa_chinensis	RchiOBHm_Chr3g0487351 RchiOBHm_Chr4g0428571 RchiOBHm_Chr4g0429251
rosa_laevigata	RLG00000023012
rosa_multiflora	Rmu_co8070416.1_g000001 Rmu_sc0000054.1_g000026 Rmu_sc0001955.1_g000013 Rmu_sc0033684.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370280 Rroxscaffold_5G00370880 Rroxscaffold_6G00394860
rosa_rugosa	Rorug02G0097800 Rorug03G0233400 Rorug03G0255700 Rorug04G0226500 Rorug04G0234500
rosa_samantha	Rh3BG316900 Rh3CG314900 Rh3DG312800 Rh4AG284000 Rh4BG289700 Rh4CG165800 Rh4CG311600 Rh4DG119200 Rh4DG286700 Rh6CG187400 Rh7AG391000 Rh7BG331200 Rh7CG410000
rosa_wichuraiana	Rw2G037400 Rw3G024910 Rw4G024650 Rw4G025130 Rw5G025190 Rw7G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
AccB1I	GGYRCC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	2 cut(s)	84, 210
AciI	CCGC	7 cut(s)	5, 53, 59, 82, 84, 139, 208
AclWI	GGATC	4 cut(s)	127, 199, 212, 359
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	4 cut(s)	145, 214, 369, 414
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	2 cut(s)	118, 413
AluI	AGCT	2 cut(s)	118, 413
Alw21I	GWGCWC	1 cut(s)	120
AlwI	GGATC	4 cut(s)	127, 199, 212, 359
AoxI	GGCC	4 cut(s)	79, 147, 223, 267
ApeKI	GCWGC	2 cut(s)	105, 375
AspLEI	GCGC	2 cut(s)	42, 375
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	25
BamHI	GGATCC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	3 cut(s)	120, 159, 384
BauI	CACGAG	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	92, 362
BccI	CCATC	2 cut(s)	167, 254
BceAI	ACGGC	1 cut(s)	118
BclI	TGATCA	1 cut(s)	90
BfaI	CTAG	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	376
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	5 cut(s)	6, 82, 85, 106, 376
BlsI	GCNGC	5 cut(s)	7, 83, 86, 107, 377
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	5 cut(s)	9, 126, 206, 406, 419
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	4 cut(s)	82, 264, 270, 368
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 214, 369, 414
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	28
Bse8I	GATNNNNATC	1 cut(s)	95
BseDI	CCNNGG	4 cut(s)	82, 264, 270, 368
BseGI	GGATG	3 cut(s)	159, 246, 304
BseJI	GATNNNNATC	1 cut(s)	95
BseLI	CCNNNNNNNGG	4 cut(s)	145, 214, 369, 414
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	2 cut(s)	234, 344
BseXI	GCAGC	2 cut(s)	92, 362
Bsh1236I	CGCG	2 cut(s)	84, 210
BshFI	GGCC	4 cut(s)	81, 149, 225, 269
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	128, 189
BslI	CCNNNNNNNGG	4 cut(s)	145, 214, 369, 414
BsnI	GGCC	4 cut(s)	81, 149, 225, 269
Bsp1286I	GDGCHC	3 cut(s)	120, 159, 384
Bsp143I	GATC	7 cut(s)	15, 90, 96, 132, 204, 237, 364
BspACI	CCGC	7 cut(s)	5, 53, 59, 82, 84, 139, 208
BspANI	GGCC	4 cut(s)	81, 149, 225, 269
BspCNI	CTCAG	1 cut(s)	247
BspFNI	CGCG	2 cut(s)	84, 210
BspLI	GGNNCC	5 cut(s)	9, 126, 206, 406, 419
BspPI	GGATC	4 cut(s)	127, 199, 212, 359
BspT107I	GGYRCC	1 cut(s)	404
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	4 cut(s)	82, 264, 270, 368
BssMI	GATC	7 cut(s)	15, 90, 96, 132, 204, 237, 364
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	119
BssT1I	CCWWGG	3 cut(s)	264, 270, 368
Bst2BI	CACGAG	1 cut(s)	119
Bst4CI	ACNGT	3 cut(s)	182, 347, 434
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	190, 380
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	82
BstEII	GGTNACC	1 cut(s)	61
BstF5I	GGATG	3 cut(s)	159, 246, 304
BstFNI	CGCG	2 cut(s)	84, 210
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	2 cut(s)	42, 375
BstKTI	GATC	7 cut(s)	18, 93, 99, 135, 207, 240, 367
BstMBI	GATC	7 cut(s)	15, 90, 96, 132, 204, 237, 364
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 78, 124, 275, 379
BstPI	GGTNACC	1 cut(s)	61
BstUI	CGCG	2 cut(s)	84, 210
BstV1I	GCAGC	2 cut(s)	92, 362
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	3 cut(s)	132, 204, 237
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	3 cut(s)	132, 204, 237
BsuRI	GGCC	4 cut(s)	81, 149, 225, 269
BtgI	CCRYGG	1 cut(s)	82
BtgZI	GCGATG	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	159, 246, 304
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	190, 380
CfoI	GCGC	2 cut(s)	42, 375
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	25
Cfr42I	CCGCGG	1 cut(s)	85
CseI	GACGC	2 cut(s)	181, 199
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	1 cut(s)	199
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	7 cut(s)	17, 92, 98, 134, 206, 239, 366
DpnII	GATC	7 cut(s)	15, 90, 96, 132, 204, 237, 364
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	3 cut(s)	264, 270, 368
Eco147I	AGGCCT	2 cut(s)	149, 269
Eco24I	GRGCYC	3 cut(s)	120, 159, 384
Eco47I	GGWCC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	118
Eco91I	GGTNACC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	118
EcoO65I	GGTNACC	1 cut(s)	61
EcoT14I	CCWWGG	3 cut(s)	264, 270, 368
EcoT38I	GRGCYC	3 cut(s)	120, 159, 384
ErhI	CCWWGG	3 cut(s)	264, 270, 368
FaeI	CATG	1 cut(s)	202
FaiI	YATR	2 cut(s)	200, 342
FatI	CATG	1 cut(s)	198
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	5 cut(s)	6, 82, 85, 106, 376
FokI	GGATG	3 cut(s)	146, 233, 311
FriOI	GRGCYC	3 cut(s)	120, 159, 384
Fsp4HI	GCNGC	5 cut(s)	6, 82, 85, 106, 376
FspBI	CTAG	1 cut(s)	414
GlaI	GCGC	2 cut(s)	41, 374
GluI	GCNGC	5 cut(s)	6, 82, 85, 106, 376
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	4 cut(s)	81, 149, 225, 269
HapII	CCGG	2 cut(s)	128, 189
HgaI	GACGC	2 cut(s)	181, 199
HhaI	GCGC	2 cut(s)	42, 375
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	2 cut(s)	40, 373
HinP1I	GCGC	2 cut(s)	40, 373
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HpaII	CCGG	2 cut(s)	128, 189
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	173, 237, 255
Hpy188III	TCNNGA	2 cut(s)	94, 421
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	2 cut(s)	197, 362
HpyAV	CCTTC	3 cut(s)	71, 173, 307
HpyCH4III	ACNGT	3 cut(s)	182, 347, 434
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 78, 124, 275, 379
HpyF3I	CTNAG	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	2 cut(s)	40, 373
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	90
KspI	CCGCGG	1 cut(s)	85
Kzo9I	GATC	7 cut(s)	15, 90, 96, 132, 204, 237, 364
LmnI	GCTCC	2 cut(s)	13, 124
LpnPI	CCDG	7 cut(s)	41, 141, 202, 299, 322, 421, 434
Lsp1109I	GCAGC	2 cut(s)	92, 362
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	7 cut(s)	17, 92, 98, 134, 206, 239, 366
MboI	GATC	7 cut(s)	15, 90, 96, 132, 204, 237, 364
MboII	GAAGA	1 cut(s)	58
MflI	RGATCY	3 cut(s)	132, 204, 237
MhlI	GDGCHC	3 cut(s)	120, 159, 384
MnlI	CCTC	5 cut(s)	146, 195, 212, 215, 365
MreI	CGCCGGCG	1 cut(s)	188
MroNI	GCCGGC	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	2 cut(s)	128, 189
MvnI	CGCG	2 cut(s)	84, 210
MwoI	GCNNNNNNNGC	5 cut(s)	39, 78, 124, 275, 379
NaeI	GCCGGC	1 cut(s)	190
NdeII	GATC	7 cut(s)	15, 90, 96, 132, 204, 237, 364
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	5 cut(s)	9, 126, 206, 406, 419
NmuCI	GTSAC	1 cut(s)	61
PceI	AGGCCT	2 cut(s)	149, 269
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PdiI	GCCGGC	1 cut(s)	190
PkrI	GCNGC	5 cut(s)	7, 83, 86, 107, 377
Psp124BI	GAGCTC	1 cut(s)	120
PspEI	GGTNACC	1 cut(s)	61
PspN4I	GGNNCC	5 cut(s)	9, 126, 206, 406, 419
PspPI	GGNCC	1 cut(s)	25
PsuI	RGATCY	3 cut(s)	132, 204, 237
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SacI	GAGCTC	1 cut(s)	120
SacII	CCGCGG	1 cut(s)	85
SalI	GTCGAC	1 cut(s)	194
SatI	GCNGC	5 cut(s)	6, 82, 85, 106, 376
Sau3AI	GATC	7 cut(s)	15, 90, 96, 132, 204, 237, 364
Sau96I	GGNCC	1 cut(s)	25
SduI	GDGCHC	3 cut(s)	120, 159, 384
SetI	ASST	5 cut(s)	68, 120, 341, 415, 419
SfaNI	GCATC	1 cut(s)	267
Sfr303I	CCGCGG	1 cut(s)	85
SgrAI	CRCCGGYG	1 cut(s)	188
SgrBI	CCGCGG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	25
SseBI	AGGCCT	2 cut(s)	149, 269
SsiI	CCGC	7 cut(s)	5, 53, 59, 82, 84, 139, 208
SspMI	CTAG	1 cut(s)	414
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	2 cut(s)	149, 269
StyI	CCWWGG	3 cut(s)	264, 270, 368
TaaI	ACNGT	3 cut(s)	182, 347, 434
TaqI	TCGA	2 cut(s)	114, 195
TaqII	GACCGA	1 cut(s)	13
TauI	GCSGC	3 cut(s)	8, 84, 87
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	2 cut(s)	105, 375
Tsp45I	GTSAC	1 cut(s)	61
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.