Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001581

Physical Location & Seq

Genomic Coordinates Reverse (-)

57329307 .. 57332472

Gene Structure 3166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG311600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGTGCTTCAGAACGATATCGATTTGCTTAACCCACCGGCTGAGCTCGAGAAGAGGAAGCACAAGCTCAAGCGACTCGTGCAGACCCCCAACTCTTTCTTCATGGATGTGAAGTGCCAGGGTTGCTTCAACATTACGACTGTGTTCAGTCACTCCCAAACCGTTGTGGTGTGTGGGAATTGCCAGACTGTGCTGTGCCAGCCCACTGGTGGCCGTGCCAGACTCACTGAGGGTTGCTCTTTCAGAAAGAAGGGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27e

Protein Analysis

86

Amino Acids

9.63

Weight (kDa)

9.08

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S27e	PF01667	30 - 84	1.5e-26	Ribosomal protein S27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45710 AT3G61110 AT3G61111 AT5G47930
fragaria_vesca	FvH4_4g22340 FvH4_4g22990
malus_domestica	MD00G1067000.v1.1 MD13G1127700.v1.1 MD13G1132700.v1.1 MD16G1127800.v1.1 MD16G1143000.v1.1
prunus_persica	Prupe.1G212900_v2.0.a1 Prupe.1G218300_v2.0.a1
pyrus_communis	pycom13g11060 pycom13g11520
rosa_chinensis	RchiOBHm_Chr3g0487351 RchiOBHm_Chr4g0428571 RchiOBHm_Chr4g0429251
rosa_laevigata	RLG00000023012
rosa_multiflora	Rmu_co8070416.1_g000001 Rmu_sc0000054.1_g000026 Rmu_sc0001955.1_g000013 Rmu_sc0033684.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370280 Rroxscaffold_5G00370880 Rroxscaffold_6G00394860
rosa_rugosa	Rorug02G0097800 Rorug03G0233400 Rorug03G0255700 Rorug04G0226500 Rorug04G0234500
rosa_samantha	Rh3BG316900 Rh3CG314900 Rh3DG312800 Rh4AG284000 Rh4BG289700 Rh4CG165800 Rh4CG311600 Rh4DG119200 Rh4DG286700 Rh6CG187400 Rh7AG391000 Rh7BG331200 Rh7CG410000
rosa_wichuraiana	Rw2G037400 Rw3G024910 Rw4G024650 Rw4G025130 Rw5G025190 Rw7G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	117
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	2 cut(s)	46, 67
AluI	AGCT	2 cut(s)	46, 67
Alw21I	GWGCWC	1 cut(s)	48
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	1 cut(s)	211
AvaI	CYCGRG	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	48
BauI	CACGAG	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	48
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	1 cut(s)	119
BlpI	GCTNAGC	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	119
BmeT110I	CYCGRG	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	119
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	119
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	2 cut(s)	33, 219
BseNI	ACTGG	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	213
BshVI	ATCGAT	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	209
BsnI	GGCC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp1720I	GCTNAGC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	2 cut(s)	34, 220
BspDI	ATCGAT	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	211
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	118
BssSI	CACGAG	1 cut(s)	77
Bst2BI	CACGAG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	3 cut(s)	142, 163, 190
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	2 cut(s)	42, 228
BstF5I	GGATG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 123, 199
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	206
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	213
BsuTUI	ATCGAT	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	204, 225
Cac8I	GCNNGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	37
ClaI	ATCGAT	1 cut(s)	21
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	5 cut(s)	41, 46, 67, 202, 213
CviKI_1	RGCY	5 cut(s)	41, 46, 67, 202, 213
DdeI	CTNAG	2 cut(s)	42, 228
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	117
EcoRV	GATATC	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	48
FaeI	CATG	1 cut(s)	106
FaiI	YATR	1 cut(s)	104
FatI	CATG	1 cut(s)	102
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	1 cut(s)	106
HinfI	GANTC	2 cut(s)	75, 222
HpaII	CCGG	1 cut(s)	38
Hpy188I	TCNGA	2 cut(s)	12, 245
Hpy188III	TCNNGA	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	3 cut(s)	142, 163, 190
HpyCH4V	TGCA	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 123, 199
HpyF3I	CTNAG	2 cut(s)	42, 228
Hsp92II	CATG	1 cut(s)	106
LpnPI	CCDG	7 cut(s)	51, 104, 131, 192, 197, 212, 232
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	2 cut(s)	64, 91
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	2 cut(s)	69, 216
MnlI	CCTC	2 cut(s)	48, 223
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	107
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	3 cut(s)	79, 123, 199
NlaIII	CATG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	47
PleI	GAGTC	2 cut(s)	69, 216
PpsI	GAGTC	2 cut(s)	69, 216
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	30
SchI	GAGTC	2 cut(s)	69, 216
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	2 cut(s)	48, 69
Sfr274I	CTCGAG	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	2 cut(s)	47, 68
SmoI	CTYRAG	2 cut(s)	47, 68
Sse9I	AATT	1 cut(s)	178
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	3 cut(s)	142, 163, 190
TaqI	TCGA	2 cut(s)	21, 48
TasI	AATT	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	2 cut(s)	211, 232
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	91
TspRI	CASTG	2 cut(s)	211, 232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XhoI	CTCGAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.