Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8070416.1

Orthogroup ID

OG0001581

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 451

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8070416.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 250 bp

gaatgatatcgatttgcttcatccaccagctgatctggagaagaggaagcacaagctcaagcggcttgtgcagaccccaaactcgttcttcatggatgtcaaatgccagggatgtttcaatataactactgtgttcagtcactcgcaaaccgttgtggtgtgtgggaactgccagacagtgttgtgccagcctactggtgggcgtgctaggctcaccgagggttgctccttcaggaggaaaggggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S27e

Protein Analysis

82

Amino Acids

9.19

Weight (kDa)

9.1

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45710 AT3G61110 AT3G61111 AT5G47930
fragaria_vesca	FvH4_4g22340 FvH4_4g22990
malus_domestica	MD00G1067000.v1.1 MD13G1127700.v1.1 MD13G1132700.v1.1 MD16G1127800.v1.1 MD16G1143000.v1.1
prunus_persica	Prupe.1G212900_v2.0.a1 Prupe.1G218300_v2.0.a1
pyrus_communis	pycom13g11060 pycom13g11520
rosa_chinensis	RchiOBHm_Chr3g0487351 RchiOBHm_Chr4g0428571 RchiOBHm_Chr4g0429251
rosa_laevigata	RLG00000023012
rosa_multiflora	Rmu_co8070416.1_g000001 Rmu_sc0000054.1_g000026 Rmu_sc0001955.1_g000013 Rmu_sc0033684.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370280 Rroxscaffold_5G00370880 Rroxscaffold_6G00394860
rosa_rugosa	Rorug02G0097800 Rorug03G0233400 Rorug03G0255700 Rorug04G0226500 Rorug04G0234500
rosa_samantha	Rh3BG316900 Rh3CG314900 Rh3DG312800 Rh4AG284000 Rh4BG289700 Rh4CG165800 Rh4CG311600 Rh4DG119200 Rh4DG286700 Rh6CG187400 Rh7AG391000 Rh7BG331200 Rh7CG410000
rosa_wichuraiana	Rw2G037400 Rw3G024910 Rw4G024650 Rw4G025130 Rw5G025190 Rw7G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	198, 235
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	2 cut(s)	30, 56
AluI	AGCT	2 cut(s)	30, 56
AsuHPI	GGTGA	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	108
BfaI	CTAG	1 cut(s)	208
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	108
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
BpmI	CTGGAG	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	42
Bsa29I	ATCGAT	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	107, 217
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 235
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	108
BseCI	ATCGAT	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	107, 217
BseGI	GGATG	3 cut(s)	20, 101, 117
BseLI	CCNNNNNNNGG	2 cut(s)	198, 235
BseNI	ACTGG	1 cut(s)	200
BsgI	GTGCAG	1 cut(s)	90
BshVI	ATCGAT	1 cut(s)	10
BslI	CCNNNNNNNGG	2 cut(s)	198, 235
Bsp143I	GATC	1 cut(s)	32
BspACI	CCGC	1 cut(s)	62
BspDI	ATCGAT	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	107, 217
BssMI	GATC	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	3 cut(s)	131, 152, 179
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	189, 205
BstENI	CCTNNNNNAGG	1 cut(s)	233
BstF5I	GGATG	3 cut(s)	20, 101, 117
BstKTI	GATC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 68, 209
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	106
BstXI	CCANNNNNNTGG	1 cut(s)	195
Bsu15I	ATCGAT	1 cut(s)	10
BsuTUI	ATCGAT	1 cut(s)	10
BtsCI	GGATG	3 cut(s)	20, 101, 117
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	189, 205
ClaI	ATCGAT	1 cut(s)	10
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	5 cut(s)	30, 56, 65, 191, 212
CviKI_1	RGCY	5 cut(s)	30, 56, 65, 191, 212
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco32I	GATATC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	215
EcoNI	CCTNNNNNAGG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	106
EcoRV	GATATC	1 cut(s)	8
FaeI	CATG	1 cut(s)	95
FaiI	YATR	2 cut(s)	93, 123
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	3 cut(s)	7, 108, 124
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	208
GluI	GCNGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	57
Hin1II	CATG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	206
Hpy188III	TCNNGA	2 cut(s)	36, 233
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	3 cut(s)	131, 152, 179
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 68, 209
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	8 cut(s)	21, 40, 93, 120, 181, 186, 201, 218
MaeI	CTAG	1 cut(s)	208
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MboII	GAAGA	2 cut(s)	53, 80
MnlI	CCTC	3 cut(s)	37, 212, 229
MspA1I	CMGCKG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	3 cut(s)	62, 68, 209
NdeII	GATC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	95
NmuCI	GTSAC	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	30
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	108
SetI	ASST	2 cut(s)	32, 58
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	3 cut(s)	131, 152, 179
TaqI	TCGA	1 cut(s)	10
TauI	GCSGC	1 cut(s)	65
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	138
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	9, 80
TspRI	CASTG	1 cut(s)	184
XagI	CCTNNNNNAGG	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	195
XspI	CTAG	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.